Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 1.6e-280 968.8 492 100.0
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 2.3e-202 709.1 484 72.9
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 3.9e-202 708.4 501 72.1
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 4.8e-200 701.4 495 72.3
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 4.1e-199 698.4 499 70.9
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 1.5e-198 696.4 495 71.7
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 3.4e-198 695.3 487 71.7
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 2.9e-197 692.2 495 71.7
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 1.1e-196 690.3 494 72.3
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 1.9e-196 689.5 494 71.3
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 1.6e-195 686.4 474 72.2
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 2.0e-193 679.5 497 69.0
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 2.0e-193 679.5 509 69.0
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 7.4e-193 677.6 505 70.7
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 4.8e-192 674.9 473 73.2
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 4.5e-190 668.3 491 68.6
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 5.9e-190 667.9 487 70.2
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 1.3e-189 666.8 500 68.0
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 6.5e-189 664.5 504 69.0
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 3.2e-188 662.1 495 68.7
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 2.1e-187 659.4 467 71.7
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 2.7e-187 659.1 509 67.6
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 6.1e-187 657.9 487 69.4
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 6.1e-187 657.9 487 70.6
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 1.0e-186 657.1 515 67.6
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 1.4e-186 656.8 487 66.3
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.8e-186 656.4 497 68.4
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 1.8e-186 656.4 487 69.6
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 5.1e-186 654.8 490 67.3
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 5.1e-186 654.8 490 67.3
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 8.8e-186 654.1 470 70.6
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 8.8e-186 654.1 487 66.5
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 2.0e-185 652.9 495 69.3
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 2.0e-185 652.9 483 68.3
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 2.0e-185 652.9 490 67.1
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 2.0e-185 652.9 488 67.8
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 3.3e-185 652.1 489 69.1
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 4.4e-185 651.7 517 65.8
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 4.4e-185 651.7 494 68.6
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 5.7e-185 651.4 484 69.0
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 5.7e-185 651.4 495 68.1
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 9.7e-185 650.6 474 70.3
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 1.3e-184 650.2 479 68.3
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 1.7e-184 649.8 501 67.7
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 2.2e-184 649.4 491 67.6
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 4.8e-184 648.3 478 68.6
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 6.3e-184 647.9 501 67.3
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 1.1e-183 647.1 518 65.8
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 1.1e-183 647.1 502 65.7
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.4e-183 646.7 490 66.7
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 1.8e-183 646.4 481 68.2
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 1.8e-183 646.4 498 66.9
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 1.8e-183 646.4 498 66.9
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 3.1e-183 645.6 473 67.4
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 9.1e-183 644.0 504 65.7
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.2e-182 643.7 490 66.3
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 1.2e-182 643.7 495 67.1
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 1.5e-182 643.3 476 67.9
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 1.5e-182 643.3 476 67.9
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 7.7e-182 641.0 495 65.9
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 1.7e-181 639.8 478 67.8
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 5.0e-181 638.3 487 66.1
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 1.1e-180 637.1 494 65.4
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 1.4e-180 636.7 492 68.3
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 1.4e-180 636.7 498 64.9
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 1.9e-180 636.3 491 65.8
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 2.5e-180 636.0 502 65.1
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 3.6e-179 632.1 458 68.6
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 1.8e-178 629.8 500 64.2
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 6.7e-178 627.9 499 64.7
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 2.0e-177 626.3 470 69.1
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 2.6e-177 625.9 471 67.9
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 4.4e-177 625.2 500 64.8
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 7.4e-177 624.4 492 64.2
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 7.4e-177 624.4 487 65.1
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 3.7e-176 622.1 497 64.6
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 1.8e-175 619.8 473 66.6
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 7.0e-175 617.8 497 63.8
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.6e-174 615.9 467 67.7
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 4.5e-174 615.1 476 65.5
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 1.1e-172 610.5 525 61.5
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 9.4e-172 607.4 472 65.0
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 1.2e-169 600.5 517 61.1
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 2.6e-169 599.4 484 63.6
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 1.7e-168 596.7 535 60.7
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 1.0e-165 587.4 493 62.3
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.9e-165 585.9 425 69.6
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 3.0e-162 575.9 467 64.9
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 7.0e-159 564.7 497 61.0
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 2.0e-158 563.1 426 66.7
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 3.8e-157 558.9 426 66.2
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 1.2e-153 547.4 391 71.6
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 5.7e-153 545.0 563 54.4
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.2e-152 543.1 490 59.6
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 5.4e-151 538.5 508 56.5
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 1.2e-150 537.3 377 69.5
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 6.8e-146 521.5 467 60.8
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 1.4e-143 513.8 452 60.2
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 2.4e-143 513.1 474 57.4
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 1.6e-139 500.4 407 63.1
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 4.9e-136 488.8 487 56.7
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 2.3e-125 453.4 354 65.8
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 8.1e-123 444.9 444 51.8
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 3.4e-121 439.5 440 52.3
QL10p041264 Quercus lobata HOM05D005286 ORTHO05D006348 2.5e-108 396.7 266 72.6
Hma1.2p1_0310F.1_g121020 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 2.7e-102 376.7 230 79.6
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 3.4e-97 359.8 294 65.0
Dinv24561 Davidia involucrata HOM05D005286 ORTHO05D006348 9.0e-90 335.1 200 80.0
Cpa.g.sc37.7 Carica papaya HOM05D005286 ORTHO05D006348 1.5e-89 334.3 267 63.7
Dinv15529 Davidia involucrata HOM05D005286 ORTHO05D006348 2.0e-89 334.0 201 79.1
SEGI_22884 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 2.0e-89 334.0 264 63.6
SEGI_35897 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 2.0e-89 334.0 264 63.6
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 5.7e-84 315.8 321 50.8
CBR_g8546 Chara braunii HOM05D005286 ORTHO05D006348 2.0e-81 307.4 332 48.2
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 1.4e-79 301.2 259 62.2
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 6.1e-78 295.8 345 45.5
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 1.8e-74 284.3 222 65.8
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 5.3e-74 282.7 247 59.9
DCAR_000205 Daucus carota HOM05D005286 ORTHO05D006348 5.0e-72 276.2 188 71.3
unitig_748.g8002 Utricularia gibba HOM05D005286 ORTHO05D006348 4.2e-71 273.1 174 74.7
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.1e-68 265.0 217 64.1
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.6e-68 263.8 223 60.1
Oeu039334.1 Olea europaea HOM05D005286 ORTHO05D006348 1.4e-66 258.1 178 73.0
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 1.9e-63 247.7 251 53.4
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 1.8e-61 241.1 157 74.5
CDE08G1664 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 1.6e-54 218.0 162 63.6
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 4.7e-54 216.5 170 62.4
CBR_g864 Chara braunii HOM05D005286 ORTHO05D006348 6.3e-43 179.5 516 25.4
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 3.3e-39 167.2 143 60.8
PRCOL_00003919 Prasinoderma coloniale HOM05D005286 ORTHO05D006348 1.0e-37 162.2 515 30.7
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 9.8e-36 155.6 222 43.2
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.6e-30 138.3 145 55.2
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 2.3e-29 134.4 136 52.2
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 5.6e-23 113.2 144 44.4
Nitab4.5_0008217g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 4.0e-21 107.1 100 53.0
Glyma.04G210301 Glycine max HOM05D005286 ORTHO05D006348 2.2e-19 101.3 54 87.0
Hma1.2p1_0310F.1_g121040 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 1.2e-17 95.5 63 71.4
CBR_g8549 Chara braunii HOM05D005286 ORTHO05D006348 1.2e-14 85.5 324 29.0
Oeu039336.1 Olea europaea HOM05D001574 ORTHO05D006348 5.2e-13 80.1 54 64.8
Nitab4.5_0002142g0070 Nicotiana tabacum HOM05D005286 ORTHO05D006348 8.9e-13 79.3 66 60.6
Cre10.g425200 Chlamydomonas reinhardtii HOM05D005286 ORTHO05D006348 2.6e-12 77.8 154 32.5
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 5.4e-10 70.1 69 63.8
Peaxi162Scf00151g00815 Petunia axillaris HOM05D005286 ORTHO05D006348 2.7e-09 67.8 81 45.7
Nitab4.5_0005379g0060 Nicotiana tabacum HOM05D005286 ORTHO05D006348 3.0e-08 64.3 95 47.4
Peaxi162Scf00151g00817 Petunia axillaris HOM05D005286 ORTHO05D006348 1.6e-06 58.5 52 57.7


User provided reference genes

Program Settings