Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 1.8e-142 509.2 250 100.0
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 3.9e-113 411.8 248 80.2
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 1.1e-112 410.2 250 79.6
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 2.5e-112 409.1 250 79.6
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 6.2e-111 404.4 250 78.0
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 6.8e-110 401.0 250 77.6
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 3.4e-109 398.7 250 76.8
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 5.8e-109 397.9 250 76.8
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 9.8e-109 397.1 250 76.8
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 6.4e-108 394.4 251 78.9
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 8.3e-108 394.0 249 77.5
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 8.3e-108 394.0 249 77.5
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 1.4e-107 393.3 251 76.5
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 1.4e-107 393.3 250 78.4
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 1.4e-107 393.3 250 77.6
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 2.4e-107 392.5 250 75.2
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 2.4e-107 392.5 250 78.8
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 3.2e-107 392.1 251 77.7
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 4.1e-107 391.7 248 75.8
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 4.1e-107 391.7 252 75.4
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 4.1e-107 391.7 250 75.6
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 7.0e-107 391.0 250 76.0
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 7.0e-107 391.0 249 74.7
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 7.0e-107 391.0 248 77.0
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 9.2e-107 390.6 250 77.6
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 9.2e-107 390.6 250 75.2
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 1.2e-106 390.2 251 76.9
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 2.0e-106 389.4 250 74.4
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 2.7e-106 389.0 251 78.1
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 2.7e-106 389.0 250 74.8
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 4.6e-106 388.3 250 77.6
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 4.6e-106 388.3 250 75.2
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 3.9e-105 385.2 252 75.0
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 3.9e-105 385.2 252 74.2
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 5.0e-105 384.8 250 76.4
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 5.0e-105 384.8 250 76.4
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 5.0e-105 384.8 251 74.5
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 8.6e-105 384.0 250 74.0
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 1.1e-104 383.6 252 74.6
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 1.5e-104 383.3 250 78.0
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 1.9e-104 382.9 252 73.0
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 2.5e-104 382.5 250 73.2
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 2.5e-104 382.5 250 76.0
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 4.3e-104 381.7 250 76.4
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 4.3e-104 381.7 250 76.4
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 9.5e-104 380.6 250 74.4
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 9.5e-104 380.6 250 76.4
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 9.5e-104 380.6 250 74.8
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 1.2e-103 380.2 250 74.8
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 1.2e-103 380.2 250 76.4
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 1.6e-103 379.8 250 74.4
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 2.1e-103 379.4 252 73.0
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 2.1e-103 379.4 251 74.5
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 2.8e-103 379.0 250 72.8
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 3.6e-103 378.6 250 75.6
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 3.6e-103 378.6 250 75.6
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 3.6e-103 378.6 248 73.0
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 4.7e-103 378.3 250 74.8
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 4.7e-103 378.3 252 73.4
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 6.2e-103 377.9 248 72.6
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 6.2e-103 377.9 250 73.6
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 6.2e-103 377.9 250 73.6
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 8.1e-103 377.5 250 73.2
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 8.1e-103 377.5 252 71.8
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 8.1e-103 377.5 250 73.6
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 1.1e-102 377.1 251 72.1
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 1.4e-102 376.7 250 74.0
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.8e-102 376.3 250 75.2
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 3.1e-102 375.6 252 73.8
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 6.8e-102 374.4 250 72.8
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 1.2e-101 373.6 250 72.4
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 1.2e-101 373.6 250 73.6
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 1.2e-101 373.6 250 73.6
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 1.2e-101 373.6 250 72.8
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 1.5e-101 373.2 251 72.9
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 2.0e-101 372.9 250 73.6
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 2.0e-101 372.9 252 73.0
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 2.6e-101 372.5 251 72.5
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 2.6e-101 372.5 250 73.2
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 3.4e-101 372.1 258 71.3
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 5.8e-101 371.3 250 72.0
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 7.5e-101 370.9 250 71.2
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 7.5e-101 370.9 252 70.6
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 9.8e-101 370.5 250 71.6
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 1.3e-100 370.2 250 71.2
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 1.3e-100 370.2 252 71.0
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 2.2e-100 369.4 250 72.8
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 2.9e-100 369.0 250 71.6
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 3.7e-100 368.6 252 72.2
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 3.7e-100 368.6 253 69.6
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 6.4e-100 367.9 250 72.4
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 8.3e-100 367.5 250 70.8
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 4.1e-99 365.2 250 72.8
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 4.1e-99 365.2 250 70.4
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 4.1e-99 365.2 250 70.0
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 9.2e-99 364.0 252 69.4
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 9.2e-99 364.0 250 68.0
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 3.5e-98 362.1 250 72.0
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 6.0e-98 361.3 241 72.6
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 1.5e-96 356.7 243 73.3
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 1.5e-96 356.7 243 73.3
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 1.9e-96 356.3 250 70.4
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 4.3e-96 355.1 274 66.8
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 4.3e-96 355.1 274 66.8
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 7.3e-96 354.4 243 72.4
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 7.3e-96 354.4 253 68.8
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 8.1e-95 350.9 253 70.0
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 1.1e-94 350.5 256 68.0
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 3.1e-94 349.0 250 68.8
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 4.0e-94 348.6 253 68.8
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 6.8e-94 347.8 241 69.7
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 8.9e-94 347.4 292 62.0
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 1.5e-93 346.7 241 69.7
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 2.4e-91 339.3 251 65.7
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 1.2e-90 337.0 291 61.2
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 1.6e-90 336.7 241 68.5
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 6.0e-90 334.7 250 67.2
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 3.0e-89 332.4 201 79.6
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 8.6e-89 330.9 225 72.0
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 1.5e-88 330.1 184 87.0
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 8.1e-87 324.3 256 64.1
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 3.4e-85 318.9 250 64.8
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 4.4e-85 318.5 251 64.5
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 7.6e-85 317.8 240 65.8
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 1.3e-84 317.0 255 61.6
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 3.5e-82 308.9 174 85.6
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 5.3e-78 295.0 181 77.9
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 3.8e-76 288.9 251 61.0
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 3.8e-76 288.9 244 61.1
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 6.7e-73 278.1 250 59.6
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 1.3e-68 263.8 153 80.4
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 1.4e-67 260.4 186 69.9
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 1.9e-67 260.0 147 85.0
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 1.9e-67 260.0 147 85.0
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.6e-66 256.9 182 72.0
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 9.6e-64 247.7 259 48.6
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 2.0e-53 213.4 180 56.1
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 9.3e-51 204.5 194 58.2
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 7.9e-50 201.4 175 58.3
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 8.7e-49 198.0 190 57.4
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 8.7e-49 198.0 190 57.4
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 2.5e-43 179.9 157 51.0
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 5.5e-43 178.7 110 78.2
AagrBONN_evm.TU.Sc2ySwM_368.1350 Anthoceros agrestis HOM05D004292 ORTHO05D005206 2.3e-41 173.3 132 61.4
AL337U10010 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 2.8e-39 166.4 88 88.6
GSVIVG01038114001 Vitis vinifera HOM05D000242 ORTHO05D000631 1.1e-27 127.9 84 76.2
Cc11_g08450 Coffea canephora HOM05D004292 ORTHO05D005206 1.5e-27 127.5 63 92.1
Cre03.g173550 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 8.0e-26 121.7 174 37.9
MD06G1224600 Malus domestica HOM05D004292 ORTHO05D005206 3.3e-24 116.3 75 73.3
C02p28370 Brassica napus HOM05D004292 ORTHO05D005206 9.7e-24 114.8 99 60.6
BolC2t08881H Brassica oleracea HOM05D004292 ORTHO05D005206 9.7e-24 114.8 99 60.6
DCAR_000574 Daucus carota HOM05D004292 ORTHO05D005206 1.1e-22 111.3 108 59.3
Cc07_g18460 Coffea canephora HOM05D004292 ORTHO05D005206 5.3e-22 109.0 75 74.7
PRCOL_00000603 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 2.7e-21 106.7 168 36.3
DCAR_009985 Daucus carota HOM05D004292 ORTHO05D005206 4.8e-15 85.9 94 54.3
DCAR_009878 Daucus carota HOM05D004292 ORTHO05D005206 5.4e-14 82.4 83 59.0
MCO07G095 Micromonas commoda HOM05D004292 ORTHO05D005206 3.5e-13 79.7 252 29.4
arahy.Tifrunner.gnm1.ann1.B49LBP Arachis hypogaea HOM05D004292 ORTHO05D005206 6.1e-10 68.9 51 60.8
Cre03.g160850 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 3.0e-09 66.6 182 28.6
arahy.Tifrunner.gnm1.ann1.06RDDY Arachis hypogaea HOM05D004292 ORTHO05D005206 2.6e-08 63.5 54 61.1
Lj4g0003601 Lotus japonicus HOM05D000353 ORTHO05D000174 3.4e-08 63.2 38 78.9
Os09g0411500 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 2.8e-07 60.1 46 54.3
arahy.Tifrunner.gnm1.ann1.A5SBZK Arachis hypogaea HOM05D004292 ORTHO05D005206 1.4e-06 57.8 52 55.8
BcaC05g26219 Brassica carinata HOM05D004292 ORTHO05D005206 7.0e-06 55.5 34 73.5


User provided reference genes

Program Settings