Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI75G1488 Tripterygium wilfordii HOM05D007927 ORTHO05D010029 6.1e-118 427.6 225 100.0
CiPaw.04G081700 Carya illinoinensis HOM05D007927 ORTHO05D010029 9.9e-76 287.3 239 69.5
Atru.chr4.915 Acer truncatum HOM05D007927 ORTHO05D010029 3.7e-75 285.4 225 71.1
FAN28G0845 Fragaria x ananassa HOM05D007927 ORTHO05D010029 4.6e-73 278.5 230 67.4
CsaV3_2G019410 Cucumis sativus L. HOM05D007927 ORTHO05D010029 1.0e-72 277.3 222 68.9
ClCG02G000450 Citrullus lanatus HOM05D007927 ORTHO05D010029 1.7e-72 276.6 223 70.0
FvH4_1g24440 Fragaria vesca HOM05D007927 ORTHO05D010029 1.7e-72 276.6 234 66.2
FAN19G2953 Fragaria x ananassa HOM05D007927 ORTHO05D010029 2.3e-72 276.2 235 66.0
QL10p043457 Quercus lobata HOM05D007927 ORTHO05D010029 5.1e-72 275.0 243 65.4
RcHm_v2.0_Chr2g0121541 Rosa chinensis HOM05D007927 ORTHO05D010029 5.1e-72 275.0 224 65.2
Duzib264G0901 Durio zibethinus HOM05D007927 ORTHO05D010029 8.6e-72 274.2 241 65.6
Hma1.2p1_0476F.1_g160770 Hydrangea macrophylla HOM05D007927 ORTHO05D010029 8.6e-72 274.2 233 68.2
Ciclev10002360m.g Citrus clementina HOM05D007927 ORTHO05D010029 1.1e-71 273.9 231 66.2
Glyma.05G191900 Glycine max HOM05D007927 ORTHO05D010029 1.9e-71 273.1 238 65.5
TAR628G1503 Trochodendron aralioides HOM05D007927 ORTHO05D010029 1.9e-71 273.1 229 68.6
COL.COLO4_35756 Corchorus olitorius HOM05D007927 ORTHO05D010029 3.3e-71 272.3 232 66.8
Gohir.D09G003800 Gossypium hirsutum HOM05D007927 ORTHO05D010029 4.3e-71 271.9 230 68.3
CSS0028810 Camellia sinensis var. sinensis HOM05D007927 ORTHO05D010029 5.6e-71 271.6 229 68.6
PGR102G3035 Punica granatum HOM05D007927 ORTHO05D010029 1.2e-70 270.4 228 67.1
vmacro18670 Vaccinium macrocarpon HOM05D007927 ORTHO05D010029 2.1e-70 269.6 221 66.1
Gohir.A09G004300 Gossypium hirsutum HOM05D007927 ORTHO05D010029 3.6e-70 268.9 230 67.8
Thecc.01G133600 Theobroma cacao HOM05D007927 ORTHO05D010029 4.7e-70 268.5 236 66.9
Manes.13G085601 Manihot esculenta HOM05D007927 ORTHO05D010029 6.2e-70 268.1 234 65.8
Phvul.002G272300 Phaseolus vulgaris HOM05D007927 ORTHO05D010029 6.2e-70 268.1 239 64.9
Prupe.4G271700 Prunus persica HOM05D007927 ORTHO05D010029 8.1e-70 267.7 235 63.4
Aqoxy5G02324 Aquilegia oxysepala HOM05D007927 ORTHO05D010029 1.1e-69 267.3 224 66.5
MD01G1005400 Malus domestica HOM05D007927 ORTHO05D010029 1.1e-69 267.3 236 63.6
Eucgr.J01289 Eucalyptus grandis HOM05D007927 ORTHO05D010029 1.4e-69 266.9 232 66.8
Dinv24372 Davidia involucrata HOM05D007927 ORTHO05D010029 3.1e-69 265.8 230 64.3
VMungo0251G0724 Vigna mungo HOM05D007927 ORTHO05D010029 5.2e-69 265.0 236 63.6
Dinv07117 Davidia involucrata HOM05D007927 ORTHO05D010029 6.8e-69 264.6 236 65.7
Rhsim08G0002700 Rhododendron simsii HOM05D007927 ORTHO05D010029 6.8e-69 264.6 232 64.2
Actinidia01389 Actinidia chinensis HOM05D007927 ORTHO05D010029 8.9e-69 264.2 239 63.6
FAN23G1573 Fragaria x ananassa HOM05D007927 ORTHO05D010029 1.5e-68 263.5 217 66.8
Lj4A837T13 Lonicera japonica HOM05D007927 ORTHO05D010029 9.9e-68 260.8 248 63.3
Medtr8g093750 Medicago truncatula HOM05D007927 ORTHO05D010029 9.9e-68 260.8 231 63.2
Psat7g045960 Pisum sativum HOM05D007927 ORTHO05D010029 9.9e-68 260.8 225 65.8
Potri.005G063600 Populus trichocarpa HOM05D007927 ORTHO05D010029 2.2e-67 259.6 235 65.5
Cpa.g.sc42.162 Carica papaya HOM05D007927 ORTHO05D010029 2.9e-67 259.2 229 63.3
GSVIVG01026475001 Vitis vinifera HOM05D007927 ORTHO05D010029 2.9e-67 259.2 222 65.3
TPR.G37352 Trifolium pratense HOM05D007927 ORTHO05D010029 4.9e-67 258.5 186 73.1
FAN26G1905 Fragaria x ananassa HOM05D007927 ORTHO05D010029 8.4e-67 257.7 280 55.4
MBI03_g42544_MAGBIO Magnolia biondii HOM05D007927 ORTHO05D010029 8.4e-67 257.7 222 66.2
MBI03_g37385_MAGBIO Magnolia biondii HOM05D007927 ORTHO05D010029 1.1e-66 257.3 222 66.2
Ca_17635_v3 Cicer arietinum L. HOM05D007927 ORTHO05D010029 1.4e-66 256.9 154 83.1
Nn1g06275 Nelumbo nucifera HOM05D007927 ORTHO05D010029 2.4e-66 256.1 217 65.0
Lj4g0020524 Lotus japonicus HOM05D007927 ORTHO05D010029 5.4e-66 255.0 231 64.1
Haze_25255 Corylus avellana HOM05D007927 ORTHO05D010029 1.6e-65 253.4 248 62.1
Cfa002902 Carpinus fangiana HOM05D007927 ORTHO05D001116 4.6e-65 251.9 154 83.8
Gorai.006G005200 Gossypium raimondii HOM05D007927 ORTHO05D010029 6.0e-65 251.5 222 65.8
Lalb_Chr07g0184391 Lupinus albus HOM05D007927 ORTHO05D010029 7.8e-65 251.1 228 63.2
Lsat_1_v5_gn_5_69000 Lactuca sativa HOM05D007927 ORTHO05D010029 1.7e-64 250.0 235 63.0
CDE02G1961 Ceratophyllum demersum HOM05D007927 ORTHO05D010029 3.9e-64 248.8 217 62.7
DCAR_014334 Daucus carota HOM05D007927 ORTHO05D010029 9.6e-63 244.2 188 69.1
ATR0584G243 Amborella trichopoda HOM05D007927 ORTHO05D010029 3.6e-62 242.3 212 62.7
HanXRQChr12g0380561 Helianthus annuus HOM05D007927 ORTHO05D010029 2.6e-60 236.1 238 59.7
MELO3C023232.2 Cucumis melo HOM05D007927 ORTHO05D010029 2.9e-59 232.6 184 70.1
ECA233G3055 Erigeron canadensis HOM05D007927 ORTHO05D010029 2.9e-59 232.6 238 59.2
Os12g0189700 Oryza sativa ssp. japonica HOM05D007927 ORTHO05D010029 1.9e-55 219.9 154 70.8
SEGI_35752 Sequoiadendron giganteum HOM05D007927 ORTHO05D010029 2.8e-54 216.1 224 55.8
Pp3c24_20210 Physcomitrium patens HOM05D007927 ORTHO05D010029 1.9e-50 203.4 152 65.8
AagrBONN_evm.TU.Sc2ySwM_344.4939 Anthoceros agrestis HOM05D007927 ORTHO05D010029 3.0e-48 196.1 189 57.1
Sabra07G0086100 Salix brachista HOM05D007927 ORTHO05D010029 1.3e-43 180.6 101 85.1
Mapoly0115s0058 Marchantia polymorpha HOM05D007927 ORTHO05D010029 4.9e-43 178.7 150 58.7
Lj4C838G8 Lonicera japonica HOM05D007927 ORTHO05D010029 2.5e-39 166.4 248 48.0
Sabra05G0052800 Salix brachista HOM05D007927 ORTHO05D010029 2.4e-37 159.8 234 47.4
SEGI_09554 Sequoiadendron giganteum HOM05D007927 ORTHO05D010029 1.3e-32 144.1 102 71.6
FAN19G2631 Fragaria x ananassa HOM05D007927 ORTHO05D010029 1.7e-27 127.1 169 47.9
FAN23G0137 Fragaria x ananassa HOM05D007927 ORTHO05D010029 6.7e-24 115.2 132 50.8
Cre01.g055151 Chlamydomonas reinhardtii HOM05D007927 ORTHO05D010029 1.7e-19 100.5 135 39.3
Gohir.D01G107700 Gossypium hirsutum HOM05D005170 ORTHO05D010029 5.7e-15 85.5 48 85.4
Gohir.D03G074800 Gossypium hirsutum HOM05D007927 ORTHO05D010029 7.4e-15 85.1 46 89.1
Gohir.D06G120200 Gossypium hirsutum HOM05D005170 ORTHO05D010029 7.4e-15 85.1 48 83.3
Gorai.010G138300 Gossypium raimondii HOM05D007927 ORTHO05D010029 2.2e-14 83.6 46 87.0
Gohir.D09G047700 Gossypium hirsutum HOM05D007927 ORTHO05D010029 4.8e-14 82.4 80 61.2
Gorai.009G413100 Gossypium raimondii HOM05D007927 ORTHO05D010029 7.0e-13 78.6 46 82.6
FvH4_1g24060 Fragaria vesca HOM05D007927 ORTHO05D010029 1.6e-12 77.4 58 69.0
Sabra07G0086200 Salix brachista HOM05D007927 ORTHO05D010029 2.0e-12 77.0 130 45.4
Gohir.D04G109100 Gossypium hirsutum HOM05D007927 ORTHO05D010029 1.7e-11 73.9 46 80.4
Pp3c2_6800 Physcomitrium patens HOM05D019817 ORTHO05D016515 6.7e-08 62.0 93 35.5
Mapoly0178s0020 Marchantia polymorpha HOM05D019817 ORTHO05D016515 7.5e-07 58.5 92 37.0
PRCOL_00005335 Prasinoderma coloniale HOM05D016266 ORTHO05D019595 1.3e-06 57.8 94 30.9
SEGI_14611 Sequoiadendron giganteum HOM05D019817 ORTHO05D016515 2.8e-06 56.6 92 32.6
Gohir.D11G266900 Gossypium hirsutum HOM05D005170 ORTHO05D006985 6.3e-06 55.5 29 89.7


User provided reference genes

Program Settings