Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI75G1481 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 1.1e-218 763.1 412 100.0
TWI18G1450 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 4.7e-148 528.5 414 75.4
QL09p051098 Quercus lobata HOM05D005417 ORTHO05D002591 2.1e-84 317.0 424 51.4
QL09p050923 Quercus lobata HOM05D005417 ORTHO05D002591 1.7e-81 307.4 427 51.3
Manes.12G047700 Manihot esculenta HOM05D005417 ORTHO05D002591 1.9e-77 293.9 430 50.9
Prupe.8G197900 Prunus persica HOM05D005417 ORTHO05D002591 2.8e-76 290.0 440 49.1
Manes.13G049800 Manihot esculenta HOM05D005417 ORTHO05D002591 3.1e-75 286.6 441 50.6
Potri.002G246400 Populus trichocarpa HOM05D005417 ORTHO05D002591 5.3e-75 285.8 461 47.5
CSS0019537 Camellia sinensis var. sinensis HOM05D005417 ORTHO05D002591 1.3e-73 281.2 424 46.9
Sabra02G0187500 Salix brachista HOM05D005417 ORTHO05D002591 1.1e-72 278.1 470 47.2
Dinv19167 Davidia involucrata HOM05D005417 ORTHO05D002591 5.4e-72 275.8 407 47.7
Thecc.01G219200 Theobroma cacao HOM05D005417 ORTHO05D002591 1.9e-69 267.3 452 46.2
Duzib211G0292 Durio zibethinus HOM05D005417 ORTHO05D002591 7.4e-69 265.4 437 46.7
CiPaw.13G049000 Carya illinoinensis HOM05D005417 ORTHO05D002591 9.0e-67 258.5 446 47.5
Gohir.A11G139800 Gossypium hirsutum HOM05D005417 ORTHO05D002591 5.1e-62 242.7 445 43.6
COL.COLO4_08651 Corchorus olitorius HOM05D005417 ORTHO05D002591 8.7e-62 241.9 452 44.0
Gorai.007G156400 Gossypium raimondii HOM05D005417 ORTHO05D002591 8.7e-62 241.9 446 43.7
Cfa010419 Carpinus fangiana HOM05D005417 ORTHO05D002591 1.5e-61 241.1 418 45.0
Gohir.D11G145866 Gossypium hirsutum HOM05D005417 ORTHO05D002591 4.3e-61 239.6 448 44.0
Psat3g149440 Pisum sativum HOM05D005417 ORTHO05D002591 2.4e-59 233.8 452 42.9
CiPaw.14G038800 Carya illinoinensis HOM05D005417 ORTHO05D002591 3.1e-59 233.4 448 43.5
Lj1g0009273 Lotus japonicus HOM05D005417 ORTHO05D002591 2.6e-58 230.3 434 45.2
VMungo1383G0191 Vigna mungo HOM05D005417 ORTHO05D002591 2.9e-57 226.9 478 41.4
MD05G1170600 Malus domestica HOM05D005417 ORTHO05D002591 3.0e-54 216.9 445 42.7
Phvul.008G132000 Phaseolus vulgaris HOM05D005417 ORTHO05D002591 5.1e-54 216.1 488 39.8
Rhsim01G0253400 Rhododendron simsii HOM05D005417 ORTHO05D002591 3.3e-53 213.4 430 40.9
Actinidia39427 Actinidia chinensis HOM05D005417 ORTHO05D002591 4.3e-53 213.0 419 42.0
vmacro02785 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 9.6e-53 211.8 424 40.8
Dinv12644 Davidia involucrata HOM05D005417 ORTHO05D002591 6.3e-52 209.1 419 43.2
Oeu007785.1 Olea europaea HOM05D005417 ORTHO05D002591 1.1e-51 208.4 422 41.5
TAR365G0760 Trochodendron aralioides HOM05D005417 ORTHO05D002591 9.0e-51 205.3 490 38.2
Nitab4.5_0002985g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 5.9e-50 202.6 406 40.4
Ciclev10024373m.g Citrus clementina HOM05D005417 ORTHO05D002591 2.2e-49 200.7 462 40.7
Medtr7g055560 Medicago truncatula HOM05D005417 ORTHO05D002591 3.8e-49 199.9 449 40.3
Medtr7g055747 Medicago truncatula HOM05D005417 ORTHO05D002591 3.8e-49 199.9 449 40.3
PGSC0003DMG400022034 Solanum tuberosum HOM05D005417 ORTHO05D002591 3.8e-49 199.9 393 41.5
arahy.Tifrunner.gnm1.ann1.K8JSLF Arachis hypogaea HOM05D005417 ORTHO05D002591 5.0e-49 199.5 403 40.4
Peaxi162Scf00372g00102 Petunia axillaris HOM05D005417 ORTHO05D002591 3.2e-48 196.8 428 40.0
Nitab4.5_0001161g0100 Nicotiana tabacum HOM05D005417 ORTHO05D002591 3.6e-47 193.4 408 42.2
Gorai.001G188400 Gossypium raimondii HOM05D005417 ORTHO05D002591 7.9e-47 192.2 406 41.6
Oeu051530.1 Olea europaea HOM05D005417 ORTHO05D002591 2.3e-46 190.7 429 38.2
Atru.chr6.1429 Acer truncatum HOM05D005417 ORTHO05D002591 8.7e-46 188.7 424 40.8
FAN15G1498 Fragaria x ananassa HOM05D005417 ORTHO05D002591 1.9e-45 187.6 601 34.6
EL10Ac7g17913 Beta vulgaris HOM05D005417 ORTHO05D002591 3.3e-45 186.8 421 40.9
Rhsim13G0048000 Rhododendron simsii HOM05D005417 ORTHO05D002591 4.3e-45 186.4 409 39.9
Aa31sc95G70 Aethionema arabicum HOM05D005417 ORTHO05D002591 1.3e-44 184.9 418 41.6
Cpa.g.sc34.103 Carica papaya HOM05D005417 ORTHO05D002591 3.7e-44 183.3 440 39.1
MD10G1158800 Malus domestica HOM05D005417 ORTHO05D002591 1.4e-43 181.4 443 38.8
FAN24G0779 Fragaria x ananassa HOM05D005417 ORTHO05D002591 1.8e-43 181.0 600 34.2
FvH4_2g18490 Fragaria vesca HOM05D005417 ORTHO05D002591 2.4e-43 180.6 600 34.2
RcHm_v2.0_Chr6g0284001 Rosa chinensis HOM05D005417 ORTHO05D002591 2.4e-43 180.6 609 34.6
Glyma.08G348101 Glycine max HOM05D005417 ORTHO05D002591 3.1e-43 180.3 245 51.4
Glyma.18G159700 Glycine max HOM05D005417 ORTHO05D002591 5.3e-43 179.5 522 34.5
PGR083G2240 Punica granatum HOM05D005417 ORTHO05D002591 5.3e-43 179.5 414 37.7
MSTRG.18834 Avicennia marina HOM05D005417 ORTHO05D002591 6.9e-43 179.1 450 37.6
Cc01_g16680 Coffea canephora HOM05D005417 ORTHO05D002591 1.2e-42 178.3 464 35.8
A07p07230 Brassica napus HOM05D005417 ORTHO05D002591 2.6e-42 177.2 452 39.2
Sc05g0001930 Simmondsia chinensis HOM05D005417 ORTHO05D002591 2.6e-42 177.2 424 38.2
BraA07t28509Z Brassica rapa HOM05D005417 ORTHO05D002591 1.0e-41 175.3 445 40.9
Nn1g07983 Nelumbo nucifera HOM05D005417 ORTHO05D002591 1.3e-41 174.9 424 39.6
FAN27G1148 Fragaria x ananassa HOM05D005417 ORTHO05D002591 2.9e-41 173.7 600 34.0
PSO063G3464 Papaver somniferum HOM05D005417 ORTHO05D002591 8.5e-41 172.2 421 36.6
CAN.G800.6 Capsicum annuum HOM05D005417 ORTHO05D002591 7.2e-40 169.1 413 38.7
Eucgr.K02134 Eucalyptus grandis HOM05D005417 ORTHO05D002591 2.1e-39 167.5 458 38.4
Gohir.A07G161200 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.1e-39 167.5 405 38.8
BcaC06g35784 Brassica carinata HOM05D005417 ORTHO05D002591 2.7e-39 167.2 447 35.8
BolC7t41558H Brassica oleracea HOM05D005417 ORTHO05D002591 2.7e-39 167.2 447 35.8
Ca_03471_v3 Cicer arietinum L. HOM05D005417 ORTHO05D002591 1.8e-38 164.5 246 50.0
Sp3g22720 Schrenkiella parvula HOM05D005417 ORTHO05D002591 3.9e-38 163.3 425 36.9
C07p10920 Brassica napus HOM05D005417 ORTHO05D002591 6.7e-38 162.5 445 38.4
Migut.D02505 Erythranthe guttata HOM05D005417 ORTHO05D002591 8.8e-38 162.2 489 34.2
Nn3g20048 Nelumbo nucifera HOM05D005417 ORTHO05D002591 8.8e-38 162.2 419 37.2
Nn3g20049 Nelumbo nucifera HOM05D005417 ORTHO05D002591 8.8e-38 162.2 419 37.2
Gohir.A07G092900 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.0e-37 161.0 429 37.8
Sopen06g002670 Solanum pennellii HOM05D005417 ORTHO05D002591 3.3e-37 160.2 394 35.0
AT3G25130 Arabidopsis thaliana HOM05D005417 ORTHO05D002591 4.3e-37 159.8 442 34.4
AL3G40820 Arabidopsis lyrata HOM05D005417 ORTHO05D002591 3.7e-36 156.8 442 33.9
Gohir.D07G097400 Gossypium hirsutum HOM05D005417 ORTHO05D002591 4.8e-36 156.4 431 38.5
TPR.G976 Trifolium pratense HOM05D005417 ORTHO05D002591 4.8e-36 156.4 381 38.6
TAR636G0419 Trochodendron aralioides HOM05D005417 ORTHO05D002591 8.2e-36 155.6 355 36.9
Solyc06g007790.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 3.1e-35 153.7 393 33.8
Peaxi162Scf00068g00216 Petunia axillaris HOM05D005417 ORTHO05D002591 6.9e-35 152.5 312 42.0
Sopen09g022730 Solanum pennellii HOM05D005417 ORTHO05D002591 1.2e-34 151.8 404 37.6
MSTRG.20970 Avicennia marina HOM05D005417 ORTHO05D002591 1.5e-34 151.4 447 35.3
Lalb_Chr03g0041401 Lupinus albus HOM05D005417 ORTHO05D002591 1.5e-34 151.4 149 58.4
PGR044G1095 Punica granatum HOM05D005417 ORTHO05D002591 2.0e-34 151.0 449 37.4
CAN.G181.55 Capsicum annuum HOM05D005417 ORTHO05D002591 1.0e-33 148.7 325 39.4
ClCG07G002110 Citrullus lanatus HOM05D005417 ORTHO05D002591 1.0e-33 148.7 323 37.5
MELO3C022719.2 Cucumis melo HOM05D005417 ORTHO05D002591 1.3e-33 148.3 167 54.5
Solyc09g059550.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 2.2e-33 147.5 408 37.5
Nitab4.5_0002641g0180 Nicotiana tabacum HOM05D005417 ORTHO05D002591 2.9e-33 147.1 420 33.8
DCAR_012672 Daucus carota HOM05D005417 ORTHO05D002591 1.9e-32 144.4 432 33.3
Nitab4.5_0003656g0060 Nicotiana tabacum HOM05D005417 ORTHO05D002591 3.2e-32 143.7 149 62.4
PGSC0003DMG400017495 Solanum tuberosum HOM05D005417 ORTHO05D002591 3.2e-32 143.7 407 36.4
Carub.0003s2546 Capsella rubella HOM05D005417 ORTHO05D002591 2.7e-31 140.6 426 35.4
Gorai.001G104900 Gossypium raimondii HOM05D005417 ORTHO05D002591 6.1e-31 139.4 426 35.9
THA.LOC104804626 Tarenaya hassleriana HOM05D005417 ORTHO05D002591 1.0e-30 138.7 461 35.1
Lsat_1_v5_gn_9_14981 Lactuca sativa HOM05D005417 ORTHO05D002591 1.4e-30 138.3 406 33.3
Haze_03369 Corylus avellana HOM05D005417 ORTHO05D002591 3.9e-30 136.7 310 39.7
vmacro14737 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 5.2e-30 136.3 331 36.9
PSO017G4959 Papaver somniferum HOM05D005417 ORTHO05D002591 7.4e-29 132.5 432 31.5
SalBow6G1220 Salvia bowleyana HOM05D005417 ORTHO05D002591 3.7e-28 130.2 426 32.6
ECA248G2280 Erigeron canadensis HOM05D005417 ORTHO05D002591 3.1e-27 127.1 401 33.4
HanXRQChr10g0279531 Helianthus annuus HOM05D005417 ORTHO05D002591 5.3e-27 126.3 507 31.4
Aqoxy2G03972 Aquilegia oxysepala HOM05D005417 ORTHO05D002591 5.0e-25 119.8 328 33.2
Gohir.D07G164700 Gossypium hirsutum HOM05D005417 ORTHO05D002591 5.0e-25 119.8 383 36.3
Nitab4.5_0013864g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 5.0e-25 119.8 130 52.3
SGA_v2.0_scaffold156G37265 Striga asiatica HOM05D005417 ORTHO05D002591 5.0e-25 119.8 400 33.8
Nitab4.5_0003020g0050 Nicotiana tabacum HOM05D005417 ORTHO05D002591 6.5e-25 119.4 176 42.6
MBI11_g07415_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 1.1e-24 118.6 390 32.6
BcaB06g26721 Brassica carinata HOM05D005417 ORTHO05D002591 7.2e-24 115.9 399 34.1
ECA247G2945 Erigeron canadensis HOM05D005417 ORTHO05D002591 3.6e-23 113.6 314 35.4
Sed0010610 Sechium edule HOM05D005417 ORTHO05D002591 4.7e-23 113.2 170 44.7
Solyc06g083330.2 Solanum lycopersicum HOM05D005417 ORTHO05D002591 4.7e-23 113.2 170 40.6
SGA_v2.0_scaffold3G01638 Striga asiatica HOM05D005417 ORTHO05D002591 1.5e-21 108.2 400 28.0
ATR0561G108 Amborella trichopoda HOM05D005417 ORTHO05D002591 4.4e-21 106.7 423 30.3
PGSC0003DMG400020102 Solanum tuberosum HOM05D005417 ORTHO05D002591 1.7e-20 104.8 160 39.4
MBI07_g27364_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 1.4e-19 101.7 124 58.1
Sopen06g034710 Solanum pennellii HOM05D005417 ORTHO05D002591 1.8e-19 101.3 160 38.8
CARHR101450 Cardamine hirsuta HOM05D005417 ORTHO05D002591 2.4e-19 100.9 328 32.0
Peaxi162Scf01312g00003 Petunia axillaris HOM05D005417 ORTHO05D002591 4.1e-19 100.1 132 47.0
unitig_749.g13592 Utricularia gibba HOM05D005417 ORTHO05D002591 4.1e-19 100.1 403 32.5
HanXRQChr01g0015481 Helianthus annuus HOM05D005417 ORTHO05D002591 2.2e-17 94.4 535 28.4
HPP92_009946 Vanilla planifolia HOM05D005417 ORTHO05D002591 2.9e-17 94.0 190 38.9
unitig_899.g15407 Utricularia gibba HOM05D005417 ORTHO05D002591 2.1e-15 87.8 146 42.5
TPR.G6388 Trifolium pratense HOM05D005417 ORTHO05D002591 9.8e-13 79.0 65 63.1
AUR62016544 Chenopodium quinoa HOM05D005417 ORTHO05D002591 2.8e-12 77.4 242 31.4
Duzib133G1381 Durio zibethinus HOM05D005417 ORTHO05D002591 3.7e-12 77.0 319 37.0
SalBow5G5435 Salvia bowleyana HOM05D005417 ORTHO05D002591 3.7e-12 77.0 110 48.2
Zm00001eb090480 Zea mays HOM05D005417 ORTHO05D002591 3.5e-10 70.5 196 36.2
Lj5g0025661 Lotus japonicus HOM05D005417 ORTHO05D002591 8.5e-09 65.9 174 35.1
ClCG09G008640 Citrullus lanatus HOM05D005417 ORTHO05D002591 1.5e-08 65.1 403 25.8
Os11g0458100 Oryza sativa ssp. japonica HOM05D005417 ORTHO05D002591 1.6e-07 61.6 140 37.9
AUR62001135 Chenopodium quinoa HOM05D005417 ORTHO05D002591 2.7e-07 60.8 201 28.9
MELO3C021078.2 Cucumis melo HOM05D005417 ORTHO05D002591 8.0e-07 59.3 406 28.1


User provided reference genes

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