Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI75G1444 Tripterygium wilfordii HOM05D008070 ORTHO05D001888 2.9e-85 318.5 165 100.0
TWI36G0098 Tripterygium wilfordii HOM05D008070 ORTHO05D001888 3.6e-59 231.9 164 76.2
CANSAT01G1404 Cannabis sativa HOM05D008070 ORTHO05D001888 2.4e-31 139.4 171 47.4
Cfa009190 Carpinus fangiana HOM05D008070 ORTHO05D001888 4.3e-28 128.6 163 47.2
Manes.12G025200 Manihot esculenta HOM05D008070 ORTHO05D001888 5.6e-28 128.3 160 45.6
CiPaw.05G184900 Carya illinoinensis HOM05D008070 ORTHO05D001888 1.5e-25 120.2 164 42.1
Haze_12224 Corylus avellana HOM05D008070 ORTHO05D001888 2.0e-25 119.8 176 42.0
Atru.chr11.2085 Acer truncatum HOM05D008070 ORTHO05D001888 3.4e-25 119.0 163 43.6
Atru.chr11.2086 Acer truncatum HOM05D008070 ORTHO05D001888 3.4e-25 119.0 163 43.6
MELO3C010682.2 Cucumis melo HOM05D008070 ORTHO05D001888 3.8e-24 115.5 163 40.5
COL.COLO4_24233 Corchorus olitorius HOM05D008070 ORTHO05D001888 1.1e-23 114.0 165 43.6
Duzib251G0841 Durio zibethinus HOM05D008070 ORTHO05D001888 1.1e-23 114.0 172 43.6
CiPaw.06G069400 Carya illinoinensis HOM05D008070 ORTHO05D001888 1.9e-23 113.2 167 44.3
Sed0022593 Sechium edule HOM05D008070 ORTHO05D001888 1.6e-22 110.2 131 41.2
ClCG08G017790 Citrullus lanatus HOM05D008070 ORTHO05D001888 2.7e-22 109.4 133 43.6
TAR622G1131 Trochodendron aralioides HOM05D008070 ORTHO05D001888 6.0e-22 108.2 168 39.9
Ciclev10032926m.g Citrus clementina HOM05D008070 ORTHO05D001888 1.0e-21 107.5 169 42.0
CsaV3_2G024840 Cucumis sativus L. HOM05D008070 ORTHO05D001888 5.1e-21 105.1 166 38.0
QL03p058730 Quercus lobata HOM05D008070 ORTHO05D001888 6.7e-21 104.8 144 43.1
TAR629G1731 Trochodendron aralioides HOM05D008070 ORTHO05D001888 6.7e-21 104.8 174 41.4
QL03p058723 Quercus lobata HOM05D010056 ORTHO05D001888 1.3e-19 100.5 173 37.6
Manes.13G026900 Manihot esculenta HOM05D008070 ORTHO05D001888 2.1e-19 99.8 163 36.2
THA.LOC104822159 Tarenaya hassleriana HOM05D008070 ORTHO05D001888 3.6e-19 99.0 133 42.9
Aa31LG4G10410 Aethionema arabicum HOM05D008070 ORTHO05D001888 4.5e-17 92.0 155 34.8
AL1G37150 Arabidopsis lyrata HOM05D008070 ORTHO05D001888 4.5e-17 92.0 156 34.6
AT1G23350 Arabidopsis thaliana HOM05D008070 ORTHO05D001888 4.5e-17 92.0 151 36.4
MELO3C011974.2 Cucumis melo HOM05D008070 ORTHO05D001888 4.5e-17 92.0 158 38.0
BcaC05g26248 Brassica carinata HOM05D008070 ORTHO05D001888 5.8e-17 91.7 161 38.5
C05p22620 Brassica napus HOM05D008070 ORTHO05D001888 5.8e-17 91.7 161 38.5
BolC5t30961H Brassica oleracea HOM05D008070 ORTHO05D001888 5.8e-17 91.7 161 38.5
BcaB07g32331 Brassica carinata HOM05D008070 ORTHO05D001888 7.6e-17 91.3 157 38.9
Eucgr.H02532 Eucalyptus grandis HOM05D008070 ORTHO05D001888 1.3e-16 90.5 163 35.0
AL2G29930 Arabidopsis lyrata HOM05D008070 ORTHO05D001888 1.7e-16 90.1 131 36.6
AT1G70540 Arabidopsis thaliana HOM05D008070 ORTHO05D001888 1.7e-16 90.1 131 36.6
Carub.0002s1726 Capsella rubella HOM05D008070 ORTHO05D001888 1.7e-16 90.1 159 35.2
CARHR063750 Cardamine hirsuta HOM05D008070 ORTHO05D001888 2.2e-16 89.7 131 36.6
MELO3C011973.2 Cucumis melo HOM05D008070 ORTHO05D001888 2.2e-16 89.7 171 35.7
Sed0024894 Sechium edule HOM05D008070 ORTHO05D001888 2.2e-16 89.7 158 34.2
THA.LOC104822979 Tarenaya hassleriana HOM05D008070 ORTHO05D001888 3.8e-16 89.0 152 36.2
Thhalv10019249m.g Eutrema salsugineum HOM05D008070 ORTHO05D001888 4.9e-16 88.6 131 35.1
CARHR023800 Cardamine hirsuta HOM05D008070 ORTHO05D001888 6.4e-16 88.2 133 39.8
Prupe.1G249100 Prunus persica HOM05D008070 ORTHO05D001888 6.4e-16 88.2 160 35.6
Carub.0001s2294 Capsella rubella HOM05D008070 ORTHO05D001888 8.4e-16 87.8 156 34.0
ATR1152G035 Amborella trichopoda HOM05D008070 ORTHO05D001888 1.9e-15 86.7 162 38.9
CsaV3_5G031330 Cucumis sativus L. HOM05D008070 ORTHO05D001888 1.9e-15 86.7 165 35.2
CDE06G1547 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 2.4e-15 86.3 143 42.7
CDE06G2294 Ceratophyllum demersum HOM05D005742 ORTHO05D001888 2.4e-15 86.3 154 37.0
Sp5g25690 Schrenkiella parvula HOM05D008070 ORTHO05D001888 2.4e-15 86.3 131 35.1
CDE07G0112 Ceratophyllum demersum HOM05D005742 ORTHO05D001888 1.2e-14 84.0 156 36.5
Sp1g20800 Schrenkiella parvula HOM05D008070 ORTHO05D001888 1.6e-14 83.6 151 35.8
A02p16620 Brassica napus HOM05D008070 ORTHO05D001888 2.1e-14 83.2 153 32.7
Cpa.g.sc69.89 Carica papaya HOM05D008070 ORTHO05D001888 2.1e-14 83.2 153 36.6
BcaC03g15202 Brassica carinata HOM05D008070 ORTHO05D001888 2.7e-14 82.8 153 32.7
C02p27870 Brassica napus HOM05D008070 ORTHO05D001888 2.7e-14 82.8 153 32.7
BolC2t08833H Brassica oleracea HOM05D008070 ORTHO05D001888 2.7e-14 82.8 153 32.7
Sed0022116 Sechium edule HOM05D008070 ORTHO05D001888 4.6e-14 82.0 160 35.6
BraA02t06717Z Brassica rapa HOM05D008070 ORTHO05D001888 6.0e-14 81.6 153 32.0
Thhalv10008931m.g Eutrema salsugineum HOM05D008070 ORTHO05D001888 6.0e-14 81.6 154 34.4
BraA07t29145Z Brassica rapa HOM05D008070 ORTHO05D001888 7.9e-14 81.3 152 34.2
A09p41290 Brassica napus HOM05D008070 ORTHO05D001888 1.0e-13 80.9 120 40.8
THA.LOC104802706 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 1.0e-13 80.9 137 32.8
BcaC06g35034 Brassica carinata HOM05D008070 ORTHO05D001888 1.8e-13 80.1 152 33.6
BolC7t42570H Brassica oleracea HOM05D008070 ORTHO05D001888 2.3e-13 79.7 152 33.6
THA.LOC104818886 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 2.3e-13 79.7 144 32.6
CDE04G3015 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 3.0e-13 79.3 140 40.7
Aa31LG7G7380 Aethionema arabicum HOM05D008070 ORTHO05D001888 3.9e-13 79.0 153 32.0
BcaB03g14151 Brassica carinata HOM05D008070 ORTHO05D001888 6.7e-13 78.2 153 34.0
CARHR081260 Cardamine hirsuta HOM05D005742 ORTHO05D001888 6.7e-13 78.2 136 31.6
MBI19_g03227_MAGBIO Magnolia biondii HOM05D005742 ORTHO05D001888 6.7e-13 78.2 154 31.8
BraA09t39622Z Brassica rapa HOM05D008070 ORTHO05D001888 8.7e-13 77.8 131 38.9
C08p21860 Brassica napus HOM05D008070 ORTHO05D001888 1.1e-12 77.4 158 31.6
Sp3g05640 Schrenkiella parvula HOM05D005742 ORTHO05D001888 1.9e-12 76.6 146 32.2
Duzib248G0935 Durio zibethinus HOM05D008070 ORTHO05D001888 2.5e-12 76.3 167 36.5
BcaC07g39196 Brassica carinata HOM05D008070 ORTHO05D001888 4.3e-12 75.5 158 31.6
BolC8t49825H Brassica oleracea HOM05D008070 ORTHO05D001888 4.3e-12 75.5 158 31.6
Oeu032017.1 Olea europaea HOM05D005742 ORTHO05D001888 4.3e-12 75.5 159 32.7
TAR362G0759 Trochodendron aralioides HOM05D005742 ORTHO05D001888 4.3e-12 75.5 154 36.4
BcaB03g11935 Brassica carinata HOM05D008070 ORTHO05D001888 9.6e-12 74.3 153 31.4
A08p28210 Brassica napus HOM05D008070 ORTHO05D001888 9.6e-12 74.3 158 31.0
BraA08t34752Z Brassica rapa HOM05D008070 ORTHO05D001888 9.6e-12 74.3 158 31.0
PSO017G3787 Papaver somniferum HOM05D020914 ORTHO05D023578 9.6e-12 74.3 170 30.6
Sed0009222 Sechium edule HOM05D005742 ORTHO05D001888 9.6e-12 74.3 159 27.0
Thhalv10022426m.g Eutrema salsugineum HOM05D005742 ORTHO05D001888 1.3e-11 73.9 146 30.8
THA.LOC104809586 Tarenaya hassleriana HOM05D009121 ORTHO05D001888 1.3e-11 73.9 163 28.8
BcaC05g30549 Brassica carinata HOM05D005742 ORTHO05D001888 2.8e-11 72.8 133 31.6
QL04p082804 Quercus lobata HOM05D010056 ORTHO05D001888 2.8e-11 72.8 162 31.5
TWI09G1381 Tripterygium wilfordii HOM05D005742 ORTHO05D001888 2.8e-11 72.8 146 34.2
AL3G17770 Arabidopsis lyrata HOM05D005742 ORTHO05D001888 4.8e-11 72.0 146 30.1
Hma1.2p1_0013F.1_g008650 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 4.8e-11 72.0 149 31.5
Rhsim02G0004500 Rhododendron simsii HOM05D005742 ORTHO05D001888 6.2e-11 71.6 141 31.2
MD16G1155100 Malus domestica HOM05D005742 ORTHO05D001888 8.1e-11 71.2 148 29.7
Nn4g25584 Nelumbo nucifera HOM05D005742 ORTHO05D001888 8.1e-11 71.2 156 32.1
PSO478G3987 Papaver somniferum HOM05D020914 ORTHO05D001888 8.1e-11 71.2 170 30.6
QL04p082607 Quercus lobata HOM05D010056 ORTHO05D001888 8.1e-11 71.2 146 32.9
Actinidia18454 Actinidia chinensis HOM05D005742 ORTHO05D001888 1.1e-10 70.9 141 34.0
Actinidia40376 Actinidia chinensis HOM05D005742 ORTHO05D001888 1.1e-10 70.9 141 34.0
Rhsim04G0235100 Rhododendron simsii HOM05D005742 ORTHO05D001888 1.1e-10 70.9 139 33.8
Carub.0003s0617 Capsella rubella HOM05D005742 ORTHO05D001888 1.4e-10 70.5 137 29.9
TAR633G1530 Trochodendron aralioides HOM05D005742 ORTHO05D001888 1.8e-10 70.1 142 35.2
AT3G36659 Arabidopsis thaliana HOM05D005742 ORTHO05D001888 2.4e-10 69.7 146 29.5
TWI53G1179 Tripterygium wilfordii HOM05D005742 ORTHO05D001888 2.4e-10 69.7 145 33.8
Aa31LG5G17240 Aethionema arabicum HOM05D005742 ORTHO05D001888 3.1e-10 69.3 133 28.6
BcaC09g47911 Brassica carinata HOM05D005742 ORTHO05D001888 3.1e-10 69.3 156 30.1
BolC1t05594H Brassica oleracea HOM05D005742 ORTHO05D001888 3.1e-10 69.3 156 30.1
MBI10_g44381_MAGBIO Magnolia biondii HOM05D008070 ORTHO05D001888 3.1e-10 69.3 141 34.8
QL06p011856 Quercus lobata HOM05D005742 ORTHO05D001888 3.1e-10 69.3 148 32.4
Actinidia15607 Actinidia chinensis HOM05D005742 ORTHO05D001888 4.0e-10 68.9 150 32.7
Ah.04g157100 Amaranthus hybridus HOM05D005742 ORTHO05D001888 4.0e-10 68.9 83 41.0
BNapus_Darmor_BZH_scaffold_118p00010 Brassica napus HOM05D005742 ORTHO05D001888 4.0e-10 68.9 156 30.1
BraA01t04423Z Brassica rapa HOM05D005742 ORTHO05D001888 4.0e-10 68.9 156 30.1
Haze_01291 Corylus avellana HOM05D005742 ORTHO05D001888 4.0e-10 68.9 136 30.9
Dinv44293 Davidia involucrata HOM05D005742 ORTHO05D001888 4.0e-10 68.9 141 31.9
Aa31LG2G9780 Aethionema arabicum HOM05D009121 ORTHO05D001888 5.3e-10 68.6 157 31.2
Thecc.04G299300 Theobroma cacao HOM05D005742 ORTHO05D001888 5.3e-10 68.6 149 30.9
Cpa.g.sc9.68 Carica papaya HOM05D005742 ORTHO05D001888 6.9e-10 68.2 141 30.5
Nn3g16774 Nelumbo nucifera HOM05D008070 ORTHO05D001888 1.2e-09 67.4 175 29.7
Cfa015324 Carpinus fangiana HOM05D005742 ORTHO05D001888 1.5e-09 67.0 137 29.2
CSS0018184 Camellia sinensis var. sinensis HOM05D005742 ORTHO05D001888 2.6e-09 66.2 141 31.2
CSS0026509 Camellia sinensis var. sinensis HOM05D005742 ORTHO05D001888 2.6e-09 66.2 141 31.2
Oeu003757.1 Olea europaea HOM05D005742 ORTHO05D001888 3.4e-09 65.9 141 30.5
Prupe.1G118800 Prunus persica HOM05D005742 ORTHO05D001888 3.4e-09 65.9 150 28.0
QL03p058712 Quercus lobata HOM05D008070 ORTHO05D001888 3.4e-09 65.9 115 32.2
QL04p082907 Quercus lobata HOM05D010056 ORTHO05D001888 3.4e-09 65.9 162 29.6
THA.LOC104819351 Tarenaya hassleriana HOM05D009121 ORTHO05D001888 3.4e-09 65.9 162 27.2
MD03G1299200 Malus domestica HOM05D005742 ORTHO05D001888 7.6e-09 64.7 146 28.8
Ciclev10007183m.g Citrus clementina HOM05D005742 ORTHO05D001888 1.0e-08 64.3 142 28.9
RcHm_v2.0_Chr4g0424831 Rosa chinensis HOM05D005742 ORTHO05D001888 1.3e-08 63.9 162 29.0
BcaNung05350 Brassica carinata HOM05D009121 ORTHO05D001888 1.7e-08 63.5 160 28.8
Gohir.D02G058775 Gossypium hirsutum HOM05D005742 ORTHO05D001888 1.7e-08 63.5 149 28.2
Gorai.005G066500 Gossypium raimondii HOM05D005742 ORTHO05D001888 1.7e-08 63.5 149 28.2
CANSAT78G0521 Cannabis sativa HOM05D005742 ORTHO05D001888 2.2e-08 63.2 144 29.2
Aqoxy3G02842 Aquilegia oxysepala HOM05D020914 ORTHO05D023578 2.9e-08 62.8 156 29.5
BcaC07g38589 Brassica carinata HOM05D009121 ORTHO05D001888 2.9e-08 62.8 153 26.1
Duzib151G0239 Durio zibethinus HOM05D005742 ORTHO05D001888 2.9e-08 62.8 173 28.3
TWI75G0476 Tripterygium wilfordii HOM05D008182 ORTHO05D001888 2.9e-08 62.8 171 30.4
ATR0796G165 Amborella trichopoda HOM05D005742 ORTHO05D001888 3.8e-08 62.4 74 41.9
DCAR_027000 Daucus carota HOM05D005742 ORTHO05D001888 3.8e-08 62.4 137 29.9
CSS0018735 Camellia sinensis var. sinensis HOM05D009745 ORTHO05D011350 6.5e-08 61.6 166 28.3
Aqoxy1G03527 Aquilegia oxysepala HOM05D020914 ORTHO05D023578 1.1e-07 60.8 159 28.9
Eucgr.H01005 Eucalyptus grandis HOM05D005742 ORTHO05D001888 1.1e-07 60.8 143 28.0
C09p21480 Brassica napus HOM05D009121 ORTHO05D001888 1.4e-07 60.5 163 28.2
BolC9t55053H Brassica oleracea HOM05D009121 ORTHO05D001888 1.4e-07 60.5 163 28.2
Nn3g21713 Nelumbo nucifera HOM05D005742 ORTHO05D001888 1.4e-07 60.5 154 27.3
Carub.0002s0459 Capsella rubella HOM05D009121 ORTHO05D001888 1.9e-07 60.1 162 26.5
Dinv15186 Davidia involucrata HOM05D001340 ORTHO05D002318 1.9e-07 60.1 112 33.0
HPP92_027565 Vanilla planifolia HOM05D005742 ORTHO05D001888 1.9e-07 60.1 134 27.6
A09p17300 Brassica napus HOM05D009121 ORTHO05D001888 2.5e-07 59.7 160 27.5
BraA09t37359Z Brassica rapa HOM05D009121 ORTHO05D001888 2.5e-07 59.7 160 27.5
CDE02G2547 Ceratophyllum demersum HOM05D005742 ORTHO05D001888 2.5e-07 59.7 76 38.2
HPP92_017245 Vanilla planifolia HOM05D005742 ORTHO05D001888 2.5e-07 59.7 134 27.6
DCAR_026529 Daucus carota HOM05D009745 ORTHO05D011350 3.2e-07 59.3 174 29.9
vmacro15186 Vaccinium macrocarpon HOM05D005742 ORTHO05D001888 3.2e-07 59.3 163 30.7
Carub.0003s0619 Capsella rubella HOM05D005742 ORTHO05D001888 4.2e-07 58.9 130 27.7
Hma1.2p1_0293F.1_g116340 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 4.2e-07 58.9 92 38.0
Hma1.2p1_0400F.1_g144500 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 4.2e-07 58.9 92 38.0
Lj6P690T34 Lonicera japonica HOM05D005742 ORTHO05D001888 4.2e-07 58.9 142 30.3
HPP92_009710 Vanilla planifolia HOM05D000001 ORTHO05D010338 4.2e-07 58.9 90 37.8
BcaB05g24587 Brassica carinata HOM05D008070 ORTHO05D001888 5.5e-07 58.5 93 36.6
CDE07G0552 Ceratophyllum demersum HOM05D001445 ORTHO05D003404 5.5e-07 58.5 72 37.5
Duzib052G0264 Durio zibethinus HOM05D005742 ORTHO05D001888 5.5e-07 58.5 171 28.7
MBI18_g17308_MAGBIO Magnolia biondii HOM05D005742 ORTHO05D001888 5.5e-07 58.5 91 36.3
Actinidia13362 Actinidia chinensis HOM05D005742 ORTHO05D001888 7.1e-07 58.2 98 37.8
Aa31LG1G9980 Aethionema arabicum HOM05D008182 ORTHO05D001888 7.1e-07 58.2 146 28.8
BcaC03g16868 Brassica carinata HOM05D001445 ORTHO05D001261 9.3e-07 57.8 125 31.2
CDE06G2513 Ceratophyllum demersum HOM05D001445 ORTHO05D001261 9.3e-07 57.8 72 37.5
Glyma.15G141100 Glycine max HOM05D005742 ORTHO05D001888 9.3e-07 57.8 147 28.6
PGSC0003DMG400021845 Solanum tuberosum HOM05D005742 ORTHO05D001888 9.3e-07 57.8 142 28.9
SGA_v2.0_scaffold104G30095 Striga asiatica HOM05D005742 ORTHO05D001888 9.3e-07 57.8 109 29.4
Atru.chr4.3013 Acer truncatum HOM05D005742 ORTHO05D001888 1.2e-06 57.4 139 28.8
Actinidia06790 Actinidia chinensis HOM05D005742 ORTHO05D001888 1.2e-06 57.4 75 41.3
Aqoxy2G01248 Aquilegia oxysepala HOM05D020914 ORTHO05D023578 1.6e-06 57.0 159 28.9
Cc03_g00920 Coffea canephora HOM05D005742 ORTHO05D001888 1.6e-06 57.0 153 28.1
Hma1.2p1_0129F.1_g060190 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 1.6e-06 57.0 92 37.0
Hma1.2p1_0375F.1_g139000 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 1.6e-06 57.0 97 35.1
C02p47650 Brassica napus HOM05D001445 ORTHO05D001261 2.1e-06 56.6 125 31.2
BolC2t10801H Brassica oleracea HOM05D001445 ORTHO05D001261 2.1e-06 56.6 125 31.2
Hma1.2p1_0170F.1_g075030 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 2.1e-06 56.6 92 37.0
Lsat_1_v5_gn_1_41021 Lactuca sativa HOM05D005742 ORTHO05D001888 2.1e-06 56.6 83 31.3
vmacro08056 Vaccinium macrocarpon HOM05D001258 ORTHO05D000158 2.7e-06 56.2 136 30.9
MSTRG.24819 Avicennia marina HOM05D005742 ORTHO05D001888 3.5e-06 55.8 142 23.9
PGR031G3690 Punica granatum HOM05D005742 ORTHO05D001888 3.5e-06 55.8 162 30.2
Sed0000802 Sechium edule HOM05D008070 ORTHO05D001888 3.5e-06 55.8 129 26.4
Aqoxy2G01250 Aquilegia oxysepala HOM05D020914 ORTHO05D023578 4.6e-06 55.5 158 27.2
AL1G11880 Arabidopsis lyrata HOM05D008182 ORTHO05D001888 4.6e-06 55.5 147 27.2
Sp2g11750 Schrenkiella parvula HOM05D001445 ORTHO05D001261 4.6e-06 55.5 160 30.6
CARHR001860 Cardamine hirsuta HOM05D008182 ORTHO05D001888 7.9e-06 54.7 151 29.8


User provided reference genes

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