Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI75G1362 Tripterygium wilfordii HOM05D003870 ORTHO05D004567 1.1e-75 286.6 146 100.0
TWI12G1021 Tripterygium wilfordii HOM05D003870 ORTHO05D004567 1.2e-69 266.5 146 92.5
FAN14G2389 Fragaria x ananassa HOM05D003870 ORTHO05D004567 6.9e-62 240.7 146 83.6
FAN02G0928 Fragaria x ananassa HOM05D003870 ORTHO05D004567 1.2e-61 240.0 146 83.6
THA.LOC104810527 Tarenaya hassleriana HOM05D003870 ORTHO05D004567 1.5e-61 239.6 147 84.4
FAN05G2130 Fragaria x ananassa HOM05D003870 ORTHO05D004567 2.6e-61 238.8 146 82.9
BraA08t32272Z Brassica rapa HOM05D003870 ORTHO05D004567 4.5e-61 238.0 147 83.0
CANSAT56G1465 Cannabis sativa HOM05D003870 ORTHO05D004567 5.8e-61 237.7 146 82.9
FvH4_6g31740 Fragaria vesca HOM05D003870 ORTHO05D004567 5.8e-61 237.7 146 82.9
ClCG07G013150 Citrullus lanatus HOM05D003870 ORTHO05D004567 7.6e-61 237.3 146 82.2
MELO3C012971.2 Cucumis melo HOM05D003870 ORTHO05D004567 7.6e-61 237.3 146 82.9
FAN09G1730 Fragaria x ananassa HOM05D003870 ORTHO05D004567 7.6e-61 237.3 146 82.2
RcHm_v2.0_Chr2g0138931 Rosa chinensis HOM05D003870 ORTHO05D004567 7.6e-61 237.3 146 82.9
A08p02270 Brassica napus HOM05D003870 ORTHO05D004567 9.9e-61 236.9 147 83.0
Manes.11G038100 Manihot esculenta HOM05D003870 ORTHO05D004567 9.9e-61 236.9 146 82.9
BcaC01g01311 Brassica carinata HOM05D003870 ORTHO05D004567 1.3e-60 236.5 147 82.3
BcaC01g01313 Brassica carinata HOM05D003870 ORTHO05D004567 1.3e-60 236.5 147 82.3
Ciclev10026722m.g Citrus clementina HOM05D003870 ORTHO05D004567 1.3e-60 236.5 146 83.6
Prupe.3G067400 Prunus persica HOM05D003870 ORTHO05D004567 1.3e-60 236.5 146 81.5
Sed0005638 Sechium edule HOM05D003870 ORTHO05D004567 1.7e-60 236.1 146 81.5
Potri.003G052500 Populus trichocarpa HOM05D003870 ORTHO05D004567 2.9e-60 235.3 146 82.9
Sed0024359 Sechium edule HOM05D003870 ORTHO05D004567 3.8e-60 235.0 146 81.5
CsaV3_3G025000 Cucumis sativus L. HOM05D003870 ORTHO05D004567 4.9e-60 234.6 146 81.5
Manes.04G129900 Manihot esculenta HOM05D003870 ORTHO05D004567 4.9e-60 234.6 146 82.2
BcaB04g18888 Brassica carinata HOM05D003870 ORTHO05D004567 1.1e-59 233.4 147 81.0
C03p90500 Brassica napus HOM05D003870 ORTHO05D004567 1.1e-59 233.4 147 81.0
BolC3t21374H Brassica oleracea HOM05D003870 ORTHO05D004567 1.1e-59 233.4 147 81.0
Sabra03G0026800 Salix brachista HOM05D003870 ORTHO05D004567 1.4e-59 233.0 146 82.9
C06p07460 Brassica napus HOM05D003870 ORTHO05D004567 1.9e-59 232.6 147 80.3
BolC6t35835H Brassica oleracea HOM05D003870 ORTHO05D004567 1.9e-59 232.6 147 80.3
Cpa.g.sc1182.1 Carica papaya HOM05D003870 ORTHO05D004567 1.9e-59 232.6 146 83.6
A06p01960 Brassica napus HOM05D003870 ORTHO05D004567 2.4e-59 232.3 147 80.3
BraA06t23412Z Brassica rapa HOM05D003870 ORTHO05D004567 2.4e-59 232.3 147 80.3
Cfa002093 Carpinus fangiana HOM05D003870 ORTHO05D004567 2.4e-59 232.3 146 82.9
COL.COLO4_30434 Corchorus olitorius HOM05D003870 ORTHO05D004567 2.4e-59 232.3 146 82.9
Haze_16364 Corylus avellana HOM05D003870 ORTHO05D004567 2.4e-59 232.3 146 82.9
Sp3g14500 Schrenkiella parvula HOM05D003870 ORTHO05D004567 2.4e-59 232.3 147 81.0
Dinv38024 Davidia involucrata HOM05D003870 ORTHO05D004567 3.2e-59 231.9 146 82.2
MD09G1209500 Malus domestica HOM05D003870 ORTHO05D004567 3.2e-59 231.9 146 80.8
PGR102G1204 Punica granatum HOM05D003870 ORTHO05D004567 4.2e-59 231.5 146 80.8
Carub.0001s4120 Capsella rubella HOM05D003870 ORTHO05D004567 5.4e-59 231.1 147 79.6
Hma1.2p1_1195F.1_g265780 Hydrangea macrophylla HOM05D003870 ORTHO05D004567 9.3e-59 230.3 146 80.1
Hma1.2p1_3147F.1_g333153 Hydrangea macrophylla HOM05D003870 ORTHO05D004567 9.3e-59 230.3 146 80.1
Nn2g11696 Nelumbo nucifera HOM05D003870 ORTHO05D004567 9.3e-59 230.3 146 80.1
Eucgr.F03038 Eucalyptus grandis HOM05D003870 ORTHO05D004567 1.2e-58 229.9 145 80.7
Aa31LG10G2680 Aethionema arabicum HOM05D003870 ORTHO05D004567 1.6e-58 229.6 147 78.9
A01p37960 Brassica napus HOM05D003870 ORTHO05D004567 1.6e-58 229.6 147 80.3
Gohir.A05G131700 Gossypium hirsutum HOM05D003870 ORTHO05D004567 1.6e-58 229.6 146 81.5
AL3G28820 Arabidopsis lyrata HOM05D003870 ORTHO05D004567 2.1e-58 229.2 147 79.6
Thhalv10021715m.g Eutrema salsugineum HOM05D003870 ORTHO05D004567 2.1e-58 229.2 147 79.6
Glyma.07G019700 Glycine max HOM05D003870 ORTHO05D004567 2.1e-58 229.2 146 80.8
VMungo0331G0764 Vigna mungo HOM05D003870 ORTHO05D004567 2.1e-58 229.2 146 80.1
CiPaw.01G235900 Carya illinoinensis HOM05D003870 ORTHO05D004567 2.7e-58 228.8 146 82.2
Thhalv10011814m.g Eutrema salsugineum HOM05D003870 ORTHO05D004567 2.7e-58 228.8 147 78.2
Gohir.D05G131200 Gossypium hirsutum HOM05D003870 ORTHO05D004567 2.7e-58 228.8 146 80.8
Gorai.009G134900 Gossypium raimondii HOM05D003870 ORTHO05D004567 2.7e-58 228.8 146 80.8
Ah.01g021620 Amaranthus hybridus HOM05D003870 ORTHO05D004567 3.5e-58 228.4 146 78.8
Carub.0003s1588 Capsella rubella HOM05D003870 ORTHO05D004567 3.5e-58 228.4 147 79.6
Duzib160G0587 Durio zibethinus HOM05D003870 ORTHO05D004567 3.5e-58 228.4 146 81.5
BcaC05g28907 Brassica carinata HOM05D003870 ORTHO05D004567 4.6e-58 228.0 147 78.9
C05p50360 Brassica napus HOM05D003870 ORTHO05D004567 4.6e-58 228.0 147 78.9
BolC5t33784H Brassica oleracea HOM05D003870 ORTHO05D004567 4.6e-58 228.0 147 78.9
Duzib235G0817 Durio zibethinus HOM05D003870 ORTHO05D004567 4.6e-58 228.0 146 80.8
Nn3g18073 Nelumbo nucifera HOM05D003870 ORTHO05D004567 4.6e-58 228.0 146 78.8
Sp1g38770 Schrenkiella parvula HOM05D003870 ORTHO05D004567 4.6e-58 228.0 147 78.9
Aqoxy7G01609 Aquilegia oxysepala HOM05D003870 ORTHO05D004567 6.0e-58 227.6 146 78.8
QL05p021780 Quercus lobata HOM05D003870 ORTHO05D004567 6.0e-58 227.6 145 81.4
GSVIVG01017071001 Vitis vinifera HOM05D003870 ORTHO05D004567 6.0e-58 227.6 146 80.8
CSS0035581 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 7.9e-58 227.3 148 81.1
AUR62011659 Chenopodium quinoa HOM05D003870 ORTHO05D004567 7.9e-58 227.3 146 78.8
BraA01t03856Z Brassica rapa HOM05D003870 ORTHO05D004567 1.0e-57 226.9 147 79.6
AT1G52230 Arabidopsis thaliana HOM05D003870 ORTHO05D004567 1.3e-57 226.5 147 78.9
AT3G16140 Arabidopsis thaliana HOM05D003870 ORTHO05D004567 1.3e-57 226.5 147 78.9
CARHR042360 Cardamine hirsuta HOM05D003870 ORTHO05D004567 1.3e-57 226.5 147 78.2
Thecc.06G092200 Theobroma cacao HOM05D003870 ORTHO05D004567 1.3e-57 226.5 146 80.1
THA.LOC104817982 Tarenaya hassleriana HOM05D003870 ORTHO05D004567 1.8e-57 226.1 147 81.0
CARHR091300 Cardamine hirsuta HOM05D003870 ORTHO05D004567 3.0e-57 225.3 147 78.2
Glyma.08G204800 Glycine max HOM05D003870 ORTHO05D004567 3.0e-57 225.3 146 78.8
PSO782G2129 Papaver somniferum HOM05D003870 ORTHO05D004567 3.0e-57 225.3 146 76.7
EL10Ac9g22029 Beta vulgaris HOM05D003870 ORTHO05D004567 3.9e-57 224.9 146 78.1
BcaB04g17164 Brassica carinata HOM05D003870 ORTHO05D004567 3.9e-57 224.9 145 80.0
A05p33360 Brassica napus HOM05D003870 ORTHO05D004567 3.9e-57 224.9 147 78.2
BraA05t22161Z Brassica rapa HOM05D003870 ORTHO05D004567 3.9e-57 224.9 147 78.2
PSO832G3918 Papaver somniferum HOM05D003870 ORTHO05D004567 3.9e-57 224.9 146 76.0
CSS0004601 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 5.1e-57 224.6 146 79.5
CSS0022866 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 5.1e-57 224.6 146 79.5
Phvul.010G148800 Phaseolus vulgaris HOM05D003870 ORTHO05D004567 5.1e-57 224.6 146 79.5
TAR383G0495 Trochodendron aralioides HOM05D003870 ORTHO05D004567 5.1e-57 224.6 146 78.8
Eucgr.J02958 Eucalyptus grandis HOM05D003870 ORTHO05D004567 6.7e-57 224.2 146 79.5
DCAR_023061 Daucus carota HOM05D003870 ORTHO05D004567 8.7e-57 223.8 146 79.5
TAR626G1423 Trochodendron aralioides HOM05D003870 ORTHO05D004567 8.7e-57 223.8 146 78.1
arahy.Tifrunner.gnm1.ann1.71HCYD Arachis hypogaea HOM05D003870 ORTHO05D004567 1.1e-56 223.4 146 78.1
arahy.Tifrunner.gnm1.ann1.YBSA05 Arachis hypogaea HOM05D003870 ORTHO05D004567 1.1e-56 223.4 146 78.1
Migut.D01017 Erythranthe guttata HOM05D003870 ORTHO05D004567 1.1e-56 223.4 146 78.8
TAR636G2531 Trochodendron aralioides HOM05D003870 ORTHO05D004567 1.1e-56 223.4 146 78.1
Nitab4.5_0000351g0060 Nicotiana tabacum HOM05D003870 ORTHO05D004567 3.3e-56 221.9 147 79.6
BcaB06g25707 Brassica carinata HOM05D003870 ORTHO05D004567 4.3e-56 221.5 147 76.9
ECA234G4669 Erigeron canadensis HOM05D003870 ORTHO05D004567 9.6e-56 220.3 146 79.5
HanXRQChr12g0360771 Helianthus annuus HOM05D003870 ORTHO05D004567 9.6e-56 220.3 146 76.7
Lj3g0012525 Lotus japonicus HOM05D003870 ORTHO05D004567 9.6e-56 220.3 149 77.2
SGA_v2.0_scaffold5G02558 Striga asiatica HOM05D003870 ORTHO05D004567 9.6e-56 220.3 146 78.8
CiPaw.02G148900 Carya illinoinensis HOM05D003870 ORTHO05D004567 1.6e-55 219.5 146 80.1
Lalb_Chr25g0279971 Lupinus albus HOM05D003870 ORTHO05D004567 2.1e-55 219.2 146 74.0
Cc04_g03050 Coffea canephora HOM05D003870 ORTHO05D004567 2.8e-55 218.8 146 78.1
Glyma.15G016300 Glycine max HOM05D003870 ORTHO05D004567 2.8e-55 218.8 146 77.4
MBI01_g07179_MAGBIO Magnolia biondii HOM05D003870 ORTHO05D004567 3.7e-55 218.4 146 76.0
Psat5g298080 Pisum sativum HOM05D003870 ORTHO05D004567 3.7e-55 218.4 148 75.7
Migut.I00942 Erythranthe guttata HOM05D003870 ORTHO05D004567 4.8e-55 218.0 146 76.0
Lsat_1_v5_gn_1_35241 Lactuca sativa HOM05D003870 ORTHO05D004567 4.8e-55 218.0 146 79.5
Lalb_Chr14g0373231 Lupinus albus HOM05D003870 ORTHO05D004567 6.2e-55 217.6 146 78.1
Nitab4.5_0001315g0130 Nicotiana tabacum HOM05D003870 ORTHO05D004567 6.2e-55 217.6 147 76.9
Nitab4.5_0002859g0140 Nicotiana tabacum HOM05D003870 ORTHO05D004567 6.2e-55 217.6 147 77.6
vmacro18888 Vaccinium macrocarpon HOM05D003870 ORTHO05D004567 6.2e-55 217.6 147 78.2
Nitab4.5_0018837g0020 Nicotiana tabacum HOM05D003870 ORTHO05D004567 8.1e-55 217.2 147 78.2
Actinidia21679 Actinidia chinensis HOM05D003870 ORTHO05D004567 1.1e-54 216.9 146 77.4
PGSC0003DMG400002626 Solanum tuberosum HOM05D003870 ORTHO05D004567 1.4e-54 216.5 147 78.2
Lsat_1_v5_gn_5_130901 Lactuca sativa HOM05D003870 ORTHO05D004567 1.8e-54 216.1 146 78.1
PGSC0003DMG400007571 Solanum tuberosum HOM05D003870 ORTHO05D004567 2.4e-54 215.7 146 76.7
Peaxi162Scf00015g00032 Petunia axillaris HOM05D003870 ORTHO05D004567 3.1e-54 215.3 147 76.2
MSTRG.11054 Avicennia marina HOM05D003870 ORTHO05D004567 5.3e-54 214.5 146 76.7
CAN.G1152.5 Capsicum annuum HOM05D003870 ORTHO05D004567 5.3e-54 214.5 147 76.2
Medtr2g101820 Medicago truncatula HOM05D003870 ORTHO05D004567 6.9e-54 214.2 149 75.8
Nitab4.5_0003418g0030 Nicotiana tabacum HOM05D003870 ORTHO05D004567 6.9e-54 214.2 147 76.9
Rhsim08G0223300 Rhododendron simsii HOM05D003870 ORTHO05D004567 6.9e-54 214.2 147 76.2
PGSC0003DMG400016504 Solanum tuberosum HOM05D003870 ORTHO05D004567 6.9e-54 214.2 147 76.2
Solyc03g120640.3 Solanum lycopersicum HOM05D003870 ORTHO05D004567 1.2e-53 213.4 147 77.6
VMungo1080G1700 Vigna mungo HOM05D003870 ORTHO05D004567 1.2e-53 213.4 139 77.7
SGA_v2.0_scaffold69G23361 Striga asiatica HOM05D003870 ORTHO05D004567 1.5e-53 213.0 146 74.7
Solyc06g066640.3 Solanum lycopersicum HOM05D003870 ORTHO05D004567 2.0e-53 212.6 147 75.5
Zm00001eb295610 Zea mays HOM05D003870 ORTHO05D004567 2.0e-53 212.6 146 76.0
vmacro16969 Vaccinium macrocarpon HOM05D003870 ORTHO05D004567 3.4e-53 211.8 146 76.0
unitig_0.g2124 Utricularia gibba HOM05D003870 ORTHO05D004567 4.5e-53 211.5 146 74.0
CAN.G438.27 Capsicum annuum HOM05D003870 ORTHO05D004567 5.8e-53 211.1 147 76.2
Sopen06g024910 Solanum pennellii HOM05D003870 ORTHO05D004567 5.8e-53 211.1 147 74.8
Peaxi162Scf00034g00513 Petunia axillaris HOM05D003870 ORTHO05D004567 1.3e-52 209.9 144 77.1
Solyc12g044280.2 Solanum lycopersicum HOM05D003870 ORTHO05D004567 2.9e-52 208.8 146 76.0
Sopen12g022520 Solanum pennellii HOM05D003870 ORTHO05D004567 2.9e-52 208.8 146 76.0
Oeu029644.1 Olea europaea HOM05D003870 ORTHO05D004567 6.4e-52 207.6 146 74.7
Glyma.13G357300 Glycine max HOM05D003870 ORTHO05D004567 8.4e-52 207.2 138 77.5
Rhsim12G0200100 Rhododendron simsii HOM05D003870 ORTHO05D004567 1.4e-51 206.5 146 74.7
Hund00643 Selenicereus undatus HOM05D003870 ORTHO05D004567 3.2e-51 205.3 147 71.4
AUR62016482 Chenopodium quinoa HOM05D003870 ORTHO05D004567 1.6e-50 203.0 146 72.6
Os05g0560000 Oryza sativa ssp. japonica HOM05D003870 ORTHO05D004567 1.6e-50 203.0 148 70.3
CDE02G4568 Ceratophyllum demersum HOM05D003870 ORTHO05D004567 2.1e-50 202.6 147 68.7
Sc15g0001350 Simmondsia chinensis HOM05D003870 ORTHO05D004567 2.1e-50 202.6 150 74.7
Oeu024071.1 Olea europaea HOM05D003870 ORTHO05D004567 6.0e-50 201.1 136 75.7
ATR0315G019 Amborella trichopoda HOM05D003870 ORTHO05D004567 1.8e-49 199.5 146 73.3
CDE04G3706 Ceratophyllum demersum HOM05D003870 ORTHO05D004567 1.8e-49 199.5 147 68.0
BcaC08g43379 Brassica carinata HOM05D003870 ORTHO05D004567 1.5e-48 196.4 102 92.2
AL1G60400 Arabidopsis lyrata HOM05D003870 ORTHO05D004567 4.3e-48 194.9 102 91.2
Nitab4.5_0001968g0090 Nicotiana tabacum HOM05D003870 ORTHO05D004567 1.4e-46 189.9 147 69.4
Actinidia32731 Actinidia chinensis HOM05D003870 ORTHO05D004567 2.4e-46 189.1 146 69.9
Sopen00g011820 Solanum pennellii HOM05D003870 ORTHO05D004567 5.3e-46 188.0 102 89.2
TPR.G37200 Trifolium pratense HOM05D003870 ORTHO05D004567 2.1e-42 176.0 148 66.9
HPP92_021482 Vanilla planifolia HOM05D003870 ORTHO05D004567 2.7e-42 175.6 137 70.8
SEGI_14279 Sequoiadendron giganteum HOM05D003870 ORTHO05D004567 1.1e-40 170.2 147 59.9
Pp3c9_19520 Physcomitrium patens HOM05D003870 ORTHO05D004567 6.5e-36 154.5 140 55.7
Pp3c15_19390 Physcomitrium patens HOM05D003870 ORTHO05D004567 1.4e-35 153.3 137 54.0
CBR_g31512 Chara braunii HOM05D003870 ORTHO05D004567 1.4e-33 146.7 146 56.2
Duzib192G0641 Durio zibethinus HOM05D003870 ORTHO05D004567 1.8e-33 146.4 99 77.8
Mapoly0009s0008 Marchantia polymorpha HOM05D003870 ORTHO05D004567 3.0e-33 145.6 147 56.5
C01p48190 Brassica napus HOM05D003870 ORTHO05D004567 1.1e-30 137.1 146 58.2
BolC1t04783H Brassica oleracea HOM05D003870 ORTHO05D004567 1.4e-30 136.7 146 58.2
MD17G1191200 Malus domestica HOM05D003870 ORTHO05D004567 5.3e-30 134.8 86 80.2
Dinv30483 Davidia involucrata HOM05D003870 ORTHO05D004567 6.9e-30 134.4 86 80.2
HanXRQChr10g0313451 Helianthus annuus HOM05D003870 ORTHO05D004567 1.5e-24 116.7 86 72.1
Peaxi162Scf00207g00951 Petunia axillaris HOM05D003870 ORTHO05D004567 1.3e-23 113.6 147 52.4
ECA247G2331 Erigeron canadensis HOM05D003870 ORTHO05D004567 8.2e-23 110.9 78 69.2
MD17G1191400 Malus domestica HOM05D003870 ORTHO05D004567 5.9e-21 104.8 60 85.0
MCO07G351 Micromonas commoda HOM05D003870 ORTHO05D004567 8.0e-18 94.4 129 41.9
MD10G1187500 Malus domestica HOM05D003870 ORTHO05D004567 2.6e-16 89.4 75 65.3
MD14G1193300 Malus domestica HOM05D003870 ORTHO05D004567 1.7e-15 86.7 75 65.3
Cre07.g330250 Chlamydomonas reinhardtii HOM05D003870 ORTHO05D004567 4.5e-13 78.6 112 42.0
Zm00001eb343540 Zea mays HOM05D003870 ORTHO05D004567 8.5e-12 74.3 132 45.5
MD02G1178900 Malus domestica HOM05D003870 ORTHO05D004567 8.0e-10 67.8 33 90.9
unitig_747.g21485 Utricularia gibba HOM05D003870 ORTHO05D004567 5.7e-08 61.6 45 68.9
TAR629G2234 Trochodendron aralioides HOM05D002207 ORTHO05D002250 4.1e-06 55.5 43 69.8


User provided reference genes

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