Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI75G0636 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 1.5e-101 372.9 188 100.0
TWI79G0863 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 7.5e-77 290.8 187 82.9
Atru.chr3.3979 Acer truncatum HOM05D004998 ORTHO05D006104 7.0e-59 231.1 187 67.9
GSVIVG01024930001 Vitis vinifera HOM05D004998 ORTHO05D006104 1.4e-54 216.9 187 64.7
CiPaw.14G067400 Carya illinoinensis HOM05D004998 ORTHO05D006104 2.9e-52 209.1 187 63.6
Ciclev10029345m.g Citrus clementina HOM05D004998 ORTHO05D006104 3.7e-52 208.8 183 63.4
Cfa011521 Carpinus fangiana HOM05D004998 ORTHO05D006104 6.4e-52 208.0 187 64.7
Prupe.6G073200 Prunus persica HOM05D004998 ORTHO05D006104 1.1e-51 207.2 187 65.8
Dinv17028 Davidia involucrata HOM05D004998 ORTHO05D006104 2.4e-51 206.1 187 64.2
Dinv42976 Davidia involucrata HOM05D004998 ORTHO05D006104 2.4e-51 206.1 187 64.2
Dinv43123 Davidia involucrata HOM05D004998 ORTHO05D006104 2.4e-51 206.1 187 64.2
Potri.009G033400 Populus trichocarpa HOM05D004998 ORTHO05D006104 2.4e-51 206.1 189 63.5
Sabra09G0023800 Salix brachista HOM05D004998 ORTHO05D006104 1.6e-50 203.4 181 64.6
Eucgr.B02327 Eucalyptus grandis HOM05D004998 ORTHO05D006104 2.7e-50 202.6 188 59.6
ClCG02G020020 Citrullus lanatus HOM05D004998 ORTHO05D006104 1.0e-49 200.7 188 62.8
PGR102G0830 Punica granatum HOM05D004998 ORTHO05D006104 1.7e-49 199.9 189 60.3
CSS0033668 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 6.6e-49 198.0 190 62.1
MD11G1097800 Malus domestica HOM05D004998 ORTHO05D006104 1.1e-48 197.2 188 63.3
TAR633G0520 Trochodendron aralioides HOM05D004998 ORTHO05D006104 1.5e-48 196.8 188 61.2
MD03G1088800 Malus domestica HOM05D004998 ORTHO05D006104 4.3e-48 195.3 188 63.3
TAR636G1117 Trochodendron aralioides HOM05D004998 ORTHO05D006104 5.6e-48 194.9 196 60.2
CsaV3_6G016720 Cucumis sativus L. HOM05D004998 ORTHO05D006104 1.2e-47 193.7 187 60.4
Actinidia23927 Actinidia chinensis HOM05D004998 ORTHO05D006104 1.1e-46 190.7 189 58.7
CiPaw.13G091800 Carya illinoinensis HOM05D004998 ORTHO05D006104 1.1e-46 190.7 177 62.1
QL01p031100 Quercus lobata HOM05D004998 ORTHO05D006104 1.1e-46 190.7 188 61.2
CSS0032367 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 1.5e-45 186.8 189 59.8
vmacro03047 Vaccinium macrocarpon HOM05D004998 ORTHO05D006104 2.0e-45 186.4 191 58.6
Nn2g11147 Nelumbo nucifera HOM05D004998 ORTHO05D006104 2.6e-45 186.0 190 57.4
Manes.01G171600 Manihot esculenta HOM05D004998 ORTHO05D006104 7.5e-45 184.5 191 60.7
FAN11G2014 Fragaria x ananassa HOM05D004998 ORTHO05D006104 9.8e-45 184.1 189 59.3
Lalb_Chr03g0026531 Lupinus albus HOM05D004998 ORTHO05D006104 9.8e-45 184.1 187 58.8
Actinidia34418 Actinidia chinensis HOM05D004998 ORTHO05D006104 1.3e-44 183.7 191 57.1
MELO3C025903.2 Cucumis melo HOM05D004998 ORTHO05D006104 1.7e-44 183.3 188 60.1
Glyma.13G337700 Glycine max HOM05D004998 ORTHO05D006104 2.2e-44 183.0 188 56.9
Glyma.15G036800 Glycine max HOM05D004998 ORTHO05D006104 3.7e-44 182.2 188 55.3
EL10Ac7g16043 Beta vulgaris HOM05D004998 ORTHO05D006104 1.1e-43 180.6 189 60.3
Rhsim13G0078800 Rhododendron simsii HOM05D004998 ORTHO05D006104 1.4e-43 180.3 189 56.6
FvH4_3g36750 Fragaria vesca HOM05D004998 ORTHO05D006104 2.4e-43 179.5 189 58.7
Lj1A149T62 Lonicera japonica HOM05D004998 ORTHO05D006104 2.4e-43 179.5 188 59.6
Hma1.2p1_0615F.1_g189810 Hydrangea macrophylla HOM05D004998 ORTHO05D006104 5.4e-43 178.3 187 57.8
Thecc.09G318900 Theobroma cacao HOM05D004998 ORTHO05D006104 9.2e-43 177.6 188 60.1
THA.LOC104810769 Tarenaya hassleriana HOM05D004998 ORTHO05D006104 2.7e-42 176.0 186 55.9
Phvul.L006843 Phaseolus vulgaris HOM05D004998 ORTHO05D006104 3.5e-42 175.6 189 55.0
FAN21G1380 Fragaria x ananassa HOM05D004998 ORTHO05D006104 7.8e-42 174.5 193 57.5
RcHm_v2.0_Chr5g0065711 Rosa chinensis HOM05D004998 ORTHO05D006104 1.0e-41 174.1 188 56.9
Hund18896 Selenicereus undatus HOM05D004998 ORTHO05D006104 8.6e-41 171.0 189 55.6
Sed0008555 Sechium edule HOM05D004998 ORTHO05D006104 1.9e-40 169.9 185 55.1
AUR62009547 Chenopodium quinoa HOM05D004998 ORTHO05D006104 2.5e-40 169.5 188 55.3
Gohir.A05G094300 Gossypium hirsutum HOM05D004998 ORTHO05D006104 2.5e-40 169.5 183 59.0
AUR62001761 Chenopodium quinoa HOM05D004998 ORTHO05D006104 3.3e-40 169.1 188 55.3
Cc01_g13080 Coffea canephora HOM05D004998 ORTHO05D006104 7.3e-40 167.9 195 53.3
FAN16G3214 Fragaria x ananassa HOM05D004998 ORTHO05D006104 7.3e-40 167.9 206 54.9
Duzib150G0269 Durio zibethinus HOM05D004998 ORTHO05D006104 2.8e-39 166.0 183 57.4
VMungo1080G1028 Vigna mungo HOM05D004998 ORTHO05D006104 2.8e-39 166.0 189 54.0
Duzib168G2185 Durio zibethinus HOM05D004998 ORTHO05D006104 3.6e-39 165.6 183 57.9
HanXRQChr07g0197281 Helianthus annuus HOM05D004998 ORTHO05D006104 8.1e-39 164.5 186 55.9
Lj3g0014072 Lotus japonicus HOM05D004998 ORTHO05D006104 2.3e-38 162.9 189 52.9
CANSAT54G1321 Cannabis sativa HOM05D004998 ORTHO05D006104 5.2e-38 161.8 183 56.8
MBI14_g12121_MAGBIO Magnolia biondii HOM05D004998 ORTHO05D006104 6.8e-38 161.4 191 52.9
Migut.D02075 Erythranthe guttata HOM05D004998 ORTHO05D006104 8.9e-38 161.0 189 52.4
Medtr2g097480 Medicago truncatula HOM05D004998 ORTHO05D006104 1.5e-37 160.2 189 53.4
SGA_v2.0_scaffold41G15739 Striga asiatica HOM05D004998 ORTHO05D006104 1.5e-37 160.2 191 53.4
DCAR_005961 Daucus carota HOM05D004998 ORTHO05D006104 2.6e-37 159.5 190 53.7
Psat5g285160 Pisum sativum HOM05D004998 ORTHO05D006104 2.6e-37 159.5 184 50.5
Peaxi162Scf00092g01117 Petunia axillaris HOM05D004998 ORTHO05D006104 9.9e-37 157.5 190 51.6
arahy.Tifrunner.gnm1.ann1.JSTV8M Arachis hypogaea HOM05D004998 ORTHO05D006104 1.7e-36 156.8 189 54.0
Nn2g13381 Nelumbo nucifera HOM05D004998 ORTHO05D006104 2.2e-36 156.4 194 51.5
PGSC0003DMG400002149 Solanum tuberosum HOM05D004998 ORTHO05D006104 2.2e-36 156.4 192 54.7
Solyc06g005600.3 Solanum lycopersicum HOM05D004998 ORTHO05D006104 2.9e-36 156.0 192 54.7
arahy.Tifrunner.gnm1.ann1.AD2TJP Arachis hypogaea HOM05D004998 ORTHO05D006104 4.9e-36 155.2 189 53.4
COL.COLO4_18543 Corchorus olitorius HOM05D004998 ORTHO05D006104 4.9e-36 155.2 184 53.8
Ah.08g219770 Amaranthus hybridus HOM05D004998 ORTHO05D006104 6.4e-36 154.8 196 52.6
Sopen06g001560 Solanum pennellii HOM05D004998 ORTHO05D006104 6.4e-36 154.8 192 54.7
CARHR285830 Cardamine hirsuta HOM05D004998 ORTHO05D006104 3.2e-35 152.5 187 53.5
TPR.G5593 Trifolium pratense HOM05D004998 ORTHO05D006104 3.2e-35 152.5 189 51.3
Aqoxy1G00915 Aquilegia oxysepala HOM05D004998 ORTHO05D006104 4.1e-35 152.1 193 51.3
HanXRQChr12g0374241 Helianthus annuus HOM05D004998 ORTHO05D006104 7.1e-35 151.4 186 53.2
Carub.0008s2013 Capsella rubella HOM05D004998 ORTHO05D006104 9.2e-35 151.0 187 52.4
AL8G35930 Arabidopsis lyrata HOM05D004998 ORTHO05D006104 1.6e-34 150.2 188 52.7
Aa31LG4G15620 Aethionema arabicum HOM05D004998 ORTHO05D006104 6.0e-34 148.3 182 50.0
SalBow3G1756 Salvia bowleyana HOM05D004998 ORTHO05D006104 7.8e-34 147.9 192 50.5
Lsat_1_v5_gn_9_23841 Lactuca sativa HOM05D004998 ORTHO05D006104 1.0e-33 147.5 190 52.6
Nitab4.5_0000272g0050 Nicotiana tabacum HOM05D004998 ORTHO05D006104 1.3e-33 147.1 202 48.5
ECA247G2861 Erigeron canadensis HOM05D004998 ORTHO05D006104 1.7e-33 146.7 194 52.1
Sp6g21150 Schrenkiella parvula HOM05D004998 ORTHO05D006104 1.7e-33 146.7 188 51.1
Gohir.D05G094800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 5.1e-33 145.2 183 53.0
Gorai.009G098000 Gossypium raimondii HOM05D004998 ORTHO05D006104 9.5e-32 141.0 182 51.6
BcaB08g36256 Brassica carinata HOM05D004998 ORTHO05D006104 2.1e-31 139.8 183 50.3
AT5G59460 Arabidopsis thaliana HOM05D004998 ORTHO05D006104 2.8e-31 139.4 188 51.1
C03p13690 Brassica napus HOM05D004998 ORTHO05D006104 4.7e-31 138.7 189 49.2
Gohir.A03G043800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 6.2e-31 138.3 175 57.1
Thhalv10014846m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 8.1e-31 137.9 187 48.7
ATR0559G067 Amborella trichopoda HOM05D004998 ORTHO05D006104 1.4e-30 137.1 183 45.9
Gohir.D03G123600 Gossypium hirsutum HOM05D004998 ORTHO05D006104 1.8e-30 136.7 175 57.1
Haze_24126 Corylus avellana HOM05D004998 ORTHO05D006104 4.0e-30 135.6 102 73.5
MSTRG.18567 Avicennia marina HOM05D004998 ORTHO05D006104 2.6e-29 132.9 190 49.5
Oeu053883.1 Olea europaea HOM05D004998 ORTHO05D006104 3.4e-29 132.5 169 50.9
Gorai.003G130300 Gossypium raimondii HOM05D004998 ORTHO05D006104 4.4e-29 132.1 175 56.0
BcaC03g14012 Brassica carinata HOM05D004998 ORTHO05D006104 8.4e-28 127.9 188 47.3
C02p12480 Brassica napus HOM05D004998 ORTHO05D006104 8.4e-28 127.9 188 47.3
BolC2t07348H Brassica oleracea HOM05D004998 ORTHO05D006104 8.4e-28 127.9 188 47.3
Thhalv10002686m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 8.4e-28 127.9 185 47.0
CDE02G2808 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 1.4e-27 127.1 183 46.4
Os01g0144600 Oryza sativa ssp. japonica HOM05D004998 ORTHO05D006104 3.2e-27 125.9 199 46.7
Peaxi162Scf00122g01415 Petunia axillaris HOM05D004998 ORTHO05D006104 5.4e-27 125.2 190 45.3
BraA10t43749Z Brassica rapa HOM05D004998 ORTHO05D006104 1.2e-26 124.0 173 50.9
BcaB05g22508 Brassica carinata HOM05D004998 ORTHO05D006104 1.6e-26 123.6 189 46.0
A10p16680 Brassica napus HOM05D004998 ORTHO05D006104 2.7e-26 122.9 173 50.9
A02p07120 Brassica napus HOM05D004998 ORTHO05D006104 6.0e-26 121.7 187 46.0
BraA02t05793Z Brassica rapa HOM05D004998 ORTHO05D006104 1.0e-25 120.9 188 45.7
Dinv06259 Davidia involucrata HOM05D004998 ORTHO05D006104 1.0e-25 120.9 99 71.7
PSO339G2709 Papaver somniferum HOM05D004998 ORTHO05D006104 1.0e-25 120.9 199 46.7
Cpa.g.sc81.121 Carica papaya HOM05D004998 ORTHO05D006104 3.0e-25 119.4 75 77.3
Aa31LG1G11810 Aethionema arabicum HOM05D000959 ORTHO05D000775 9.6e-24 114.4 175 44.0
Nitab4.5_0006945g0010 Nicotiana tabacum HOM05D004998 ORTHO05D006104 1.1e-22 110.9 189 42.9
HPP92_006623 Vanilla planifolia HOM05D004998 ORTHO05D006104 3.1e-22 109.4 228 39.9
C09p51870 Brassica napus HOM05D004998 ORTHO05D006104 6.9e-22 108.2 156 49.4
BolC3t13819H Brassica oleracea HOM05D004998 ORTHO05D006104 6.9e-22 108.2 160 48.1
Sc12g0001370 Simmondsia chinensis HOM05D004998 ORTHO05D006104 2.0e-21 106.7 137 48.9
CDE08G1537 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 9.9e-21 104.4 146 45.9
Nitab4.5_0007132g0030 Nicotiana tabacum HOM05D004998 ORTHO05D006104 1.4e-19 100.5 176 41.5
BolC9t58049H Brassica oleracea HOM05D004998 ORTHO05D006104 4.2e-19 99.0 138 48.6
BcaC04g19766 Brassica carinata HOM05D004998 ORTHO05D006104 1.3e-17 94.0 175 41.7
C03p13710 Brassica napus HOM05D004998 ORTHO05D006104 3.3e-16 89.4 141 44.7
FvH4_3g41460 Fragaria vesca HOM05D004998 ORTHO05D006104 3.3e-16 89.4 181 40.3
Lalb_Chr01g0003571 Lupinus albus HOM05D004998 ORTHO05D006104 5.6e-16 88.6 136 44.1
FAN11G1834 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.3e-15 87.4 181 39.8
BcaB08g36255 Brassica carinata HOM05D004998 ORTHO05D006104 1.6e-15 87.0 171 40.4
Zm00001eb124480 Zea mays HOM05D004998 ORTHO05D006104 3.6e-15 85.9 82 61.0
BcaB01g04577 Brassica carinata HOM05D004998 ORTHO05D006104 1.8e-14 83.6 150 42.7
FAN21G1361 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.5e-13 80.5 181 37.6
BcaC01g06521 Brassica carinata HOM05D004998 ORTHO05D006104 7.6e-13 78.2 184 38.0
FAN25G2664 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.3e-12 77.4 181 37.0
Pp3c16_15780 Physcomitrium patens HOM05D004998 ORTHO05D006104 1.7e-12 77.0 191 31.9
SEGI_30466 Sequoiadendron giganteum HOM05D004998 ORTHO05D006104 6.4e-12 75.1 141 37.6
CSS0021101 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 2.1e-10 70.1 66 56.1
unitig_37.g12674 Utricularia gibba HOM05D004998 ORTHO05D006104 2.1e-10 70.1 141 39.7
Oeu002429.1 Olea europaea HOM05D004998 ORTHO05D006104 2.3e-09 66.6 58 65.5
BcaC09g48433 Brassica carinata HOM05D004998 ORTHO05D006104 3.3e-08 62.8 225 31.1
FAN25G0408 Fragaria x ananassa HOM05D004998 ORTHO05D006104 7.4e-08 61.6 76 50.0
Potri.001G242104 Populus trichocarpa HOM05D004998 ORTHO05D050517 1.3e-07 60.8 47 68.1
BolC1t04941H Brassica oleracea HOM05D004998 ORTHO05D006104 3.7e-07 59.3 232 32.3
Mapoly0094s0023 Marchantia polymorpha HOM05D004998 ORTHO05D006104 6.2e-07 58.5 103 41.7
SHI05935 Sapria himalayana HOM05D004998 ORTHO05D006104 8.1e-07 58.2 141 37.6


User provided reference genes

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