Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI75G0475 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 4.1e-78 294.7 150 100.0
Thecc.04G171500 Theobroma cacao HOM05D004554 ORTHO05D005360 1.5e-51 206.5 106 95.3
CiPaw.03G115100 Carya illinoinensis HOM05D004554 ORTHO05D005360 4.3e-51 204.9 106 94.3
Ciclev10022803m.g Citrus clementina HOM05D004554 ORTHO05D005360 4.3e-51 204.9 106 94.3
Duzib151G1169 Durio zibethinus HOM05D004554 ORTHO05D005360 4.3e-51 204.9 106 94.3
Duzib268G0645 Durio zibethinus HOM05D004554 ORTHO05D005360 4.3e-51 204.9 106 94.3
TWI31G0401 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 5.6e-51 204.5 106 95.3
CANSAT56G2605 Cannabis sativa HOM05D004554 ORTHO05D005360 1.2e-50 203.4 106 94.3
Duzib212G0633 Durio zibethinus HOM05D004554 ORTHO05D005360 2.8e-50 202.2 106 92.5
Gohir.D02G111000 Gossypium hirsutum HOM05D004554 ORTHO05D005360 2.8e-50 202.2 106 93.4
Gorai.005G125900 Gossypium raimondii HOM05D004554 ORTHO05D005360 2.8e-50 202.2 106 93.4
Potri.003G183400 Populus trichocarpa HOM05D004554 ORTHO05D005360 2.8e-50 202.2 106 91.5
CiPaw.04G077100 Carya illinoinensis HOM05D004554 ORTHO05D005360 8.1e-50 200.7 105 92.4
Eucgr.E03470 Eucalyptus grandis HOM05D004554 ORTHO05D005360 8.1e-50 200.7 106 92.5
Lj1g0025297 Lotus japonicus HOM05D004554 ORTHO05D005360 8.1e-50 200.7 105 92.4
Gohir.A02G092800 Gossypium hirsutum HOM05D004554 ORTHO05D005360 1.4e-49 199.9 106 92.5
Phvul.009G152000 Phaseolus vulgaris HOM05D004554 ORTHO05D005360 3.1e-49 198.7 105 92.4
Potri.001G043400 Populus trichocarpa HOM05D004554 ORTHO05D005360 3.1e-49 198.7 106 90.6
CARHR074020 Cardamine hirsuta HOM05D004554 ORTHO05D005360 4.0e-49 198.4 106 90.6
Glyma.06G158300 Glycine max HOM05D004554 ORTHO05D005360 4.0e-49 198.4 105 91.4
Manes.04G101300 Manihot esculenta HOM05D004554 ORTHO05D005360 4.0e-49 198.4 106 90.6
Manes.11G068800 Manihot esculenta HOM05D004554 ORTHO05D005360 4.0e-49 198.4 106 90.6
AL2G40970 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 5.2e-49 198.0 106 90.6
AL6G52910 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 5.2e-49 198.0 106 90.6
AT1G80500 Arabidopsis thaliana HOM05D004554 ORTHO05D005360 5.2e-49 198.0 106 90.6
Carub.0002s1001 Capsella rubella HOM05D004554 ORTHO05D005360 5.2e-49 198.0 106 90.6
PGR119G2244 Punica granatum HOM05D004554 ORTHO05D005360 5.2e-49 198.0 105 91.4
Sp5g35300 Schrenkiella parvula HOM05D004554 ORTHO05D005360 5.2e-49 198.0 106 90.6
THA.LOC104819505 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 5.2e-49 198.0 133 77.4
Glyma.04G207300 Glycine max HOM05D004554 ORTHO05D005360 9.0e-49 197.2 105 91.4
Psat5g058840 Pisum sativum HOM05D004554 ORTHO05D005360 1.2e-48 196.8 105 90.5
TPR.G7873 Trifolium pratense HOM05D004554 ORTHO05D005360 1.2e-48 196.8 105 90.5
Sed0018246 Sechium edule HOM05D004554 ORTHO05D005360 2.0e-48 196.1 105 90.5
MELO3C023193.2 Cucumis melo HOM05D004554 ORTHO05D005360 2.6e-48 195.7 105 90.5
CSS0011930 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 4.4e-48 194.9 106 89.6
Sp2g09550 Schrenkiella parvula HOM05D004554 ORTHO05D005360 5.8e-48 194.5 106 88.7
Prupe.1G580600 Prunus persica HOM05D004554 ORTHO05D005360 7.6e-48 194.1 106 90.6
THA.LOC104807163 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 9.9e-48 193.7 133 76.7
Dinv30578 Davidia involucrata HOM05D004554 ORTHO05D005360 1.7e-47 193.0 106 87.7
RcHm_v2.0_Chr1g0339521 Rosa chinensis HOM05D004554 ORTHO05D005360 1.7e-47 193.0 106 91.5
Actinidia08808 Actinidia chinensis HOM05D004554 ORTHO05D005360 2.2e-47 192.6 106 86.8
Hund00544 Selenicereus undatus HOM05D004554 ORTHO05D005360 2.2e-47 192.6 105 86.7
CSS0043216 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 3.8e-47 191.8 106 86.8
PGSC0003DMG402028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 3.8e-47 191.8 106 86.8
Sc10g0005760 Simmondsia chinensis HOM05D004554 ORTHO05D005360 4.9e-47 191.4 105 86.7
ECA232G3015 Erigeron canadensis HOM05D004554 ORTHO05D005360 1.1e-46 190.3 106 84.9
PSO170G6065 Papaver somniferum HOM05D004554 ORTHO05D005360 1.1e-46 190.3 106 84.9
Sc25g0002650 Simmondsia chinensis HOM05D004554 ORTHO05D005360 3.2e-46 188.7 105 85.7
MSTRG.4713 Avicennia marina HOM05D004554 ORTHO05D005360 4.2e-46 188.3 105 84.8
Migut.D01058 Erythranthe guttata HOM05D004554 ORTHO05D005360 4.2e-46 188.3 105 84.8
Oeu052276.1 Olea europaea HOM05D004554 ORTHO05D005360 5.4e-46 188.0 105 86.7
Zm00001eb111730 Zea mays HOM05D004554 ORTHO05D005360 7.1e-46 187.6 107 82.2
Hma1.2p1_0515F.1_g170190 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 9.3e-46 187.2 106 84.9
Nitab4.5_0000620g0010 Nicotiana tabacum HOM05D004554 ORTHO05D005360 2.1e-45 186.0 108 85.2
A09p21270 Brassica napus HOM05D003109 ORTHO05D003578 4.6e-45 184.9 119 79.0
BraA09t37732Z Brassica rapa HOM05D004554 ORTHO05D005360 4.6e-45 184.9 119 79.0
CDE01G0639 Ceratophyllum demersum HOM05D004554 ORTHO05D005360 4.6e-45 184.9 106 84.9
Os02g0613600 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 4.6e-45 184.9 107 81.3
Gohir.A09G212650 Gossypium hirsutum HOM05D004554 ORTHO05D005360 6.0e-45 184.5 105 87.6
Nitab4.5_0005235g0030 Nicotiana tabacum HOM05D004554 ORTHO05D005360 6.0e-45 184.5 108 84.3
Solyc06g068030.3 Solanum lycopersicum HOM05D004554 ORTHO05D005360 6.0e-45 184.5 108 84.3
PSO541G2287 Papaver somniferum HOM05D004554 ORTHO05D005360 1.0e-44 183.7 106 84.0
PSO675G8776 Papaver somniferum HOM05D004554 ORTHO05D005360 1.0e-44 183.7 106 84.0
CSS0017610 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 3.9e-44 181.8 129 73.6
Gohir.D09G206200 Gossypium hirsutum HOM05D004554 ORTHO05D005360 5.1e-44 181.4 105 84.8
Gorai.006G230100 Gossypium raimondii HOM05D004554 ORTHO05D005360 5.1e-44 181.4 105 84.8
FAN10G0691 Fragaria x ananassa HOM05D004554 ORTHO05D005360 6.6e-44 181.0 145 67.6
Lsat_1_v5_gn_4_105840 Lactuca sativa HOM05D004554 ORTHO05D005360 8.7e-44 180.6 107 82.2
Zm00001eb331160 Zea mays HOM05D004554 ORTHO05D005360 1.1e-43 180.3 108 81.5
SEGI_00661 Sequoiadendron giganteum HOM05D004554 ORTHO05D005360 3.3e-43 178.7 106 79.2
CSS0029734 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 9.6e-43 177.2 118 75.4
SGA_v2.0_scaffold16G07612 Striga asiatica HOM05D004554 ORTHO05D005360 6.2e-42 174.5 107 79.4
vmacro21051 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 1.1e-41 173.7 123 71.5
Pp3c14_6180 Physcomitrium patens HOM05D004554 ORTHO05D005360 1.8e-41 172.9 106 74.5
VMungo1309G1053 Vigna mungo HOM05D004554 ORTHO05D005360 3.1e-41 172.2 105 83.8
AagrBONN_evm.TU.Sc2ySwM_362.569 Anthoceros agrestis HOM05D004554 ORTHO05D005360 4.0e-41 171.8 106 73.6
HanXRQChr16g0500531 Helianthus annuus HOM05D004554 ORTHO05D005360 4.0e-41 171.8 142 63.4
Mapoly0010s0129 Marchantia polymorpha HOM05D004554 ORTHO05D005360 4.0e-41 171.8 106 72.6
Medtr1g102650 Medicago truncatula HOM05D004554 ORTHO05D005360 4.0e-41 171.8 138 67.4
COL.COLO4_28385 Corchorus olitorius HOM05D004554 ORTHO05D005360 4.3e-35 151.8 77 97.4
QL10p039943 Quercus lobata HOM05D004554 ORTHO05D005360 9.6e-35 150.6 77 94.8
QL06p045297 Quercus lobata HOM05D004554 ORTHO05D005360 1.6e-34 149.8 77 94.8
BcaC04g21821 Brassica carinata HOM05D004554 ORTHO05D005360 2.1e-34 149.4 82 87.8
BolC9t55589H Brassica oleracea HOM05D004554 ORTHO05D005360 2.1e-34 149.4 82 87.8
Atru.chr2.1839 Acer truncatum HOM05D004554 ORTHO05D005360 2.8e-34 149.1 81 90.1
MD08G1243100 Malus domestica HOM05D004554 ORTHO05D005360 4.8e-34 148.3 77 93.5
Aa31sc43G10 Aethionema arabicum HOM05D004554 ORTHO05D005360 6.2e-34 147.9 80 90.0
FvH4_7g07440 Fragaria vesca HOM05D004554 ORTHO05D005360 8.1e-34 147.5 77 93.5
FAN06G4122 Fragaria x ananassa HOM05D004554 ORTHO05D005360 8.1e-34 147.5 77 93.5
arahy.Tifrunner.gnm1.ann1.HM0BYB Arachis hypogaea HOM05D004554 ORTHO05D005360 1.1e-33 147.1 77 93.5
arahy.Tifrunner.gnm1.ann1.NV3HYF Arachis hypogaea HOM05D004554 ORTHO05D005360 1.1e-33 147.1 77 93.5
arahy.Tifrunner.gnm1.ann1.YS1HQ5 Arachis hypogaea HOM05D004554 ORTHO05D005360 1.1e-33 147.1 77 93.5
BraA07t32021Z Brassica rapa HOM05D004554 ORTHO05D005360 1.1e-33 147.1 86 84.9
arahy.Tifrunner.gnm1.ann1.Z4TQX9 Arachis hypogaea HOM05D004554 ORTHO05D005360 2.4e-33 146.0 77 92.2
A07p45180 Brassica napus HOM05D004554 ORTHO05D005360 2.4e-33 146.0 80 88.8
C06p54030 Brassica napus HOM05D004554 ORTHO05D005360 2.4e-33 146.0 80 88.8
BolC6t40416H Brassica oleracea HOM05D004554 ORTHO05D005360 2.4e-33 146.0 80 88.8
ClCG02G000050 Citrullus lanatus HOM05D004554 ORTHO05D005360 2.4e-33 146.0 77 92.2
CsaV3_2G019710 Cucumis sativus L. HOM05D004554 ORTHO05D005360 2.4e-33 146.0 77 92.2
MD15G1436700 Malus domestica HOM05D004554 ORTHO05D005360 2.4e-33 146.0 129 66.7
Lalb_Chr08g0237951 Lupinus albus HOM05D004554 ORTHO05D005360 4.0e-33 145.2 77 90.9
FAN03G1590 Fragaria x ananassa HOM05D004554 ORTHO05D005360 1.2e-32 143.7 77 90.9
Peaxi162Scf00207g00743 Petunia axillaris HOM05D004554 ORTHO05D005360 1.2e-32 143.7 106 69.8
GSVIVG01017278001 Vitis vinifera HOM05D004554 ORTHO05D005360 1.5e-32 143.3 136 60.3
Sabra01G0029900 Salix brachista HOM05D004554 ORTHO05D005360 2.0e-32 142.9 84 83.3
Sopen06g025310 Solanum pennellii HOM05D004554 ORTHO05D005360 2.6e-32 142.5 82 82.9
vmacro16909 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 2.6e-32 142.5 84 82.1
PGSC0003DMG401028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 1.3e-31 140.2 82 82.9
Rhsim08G0215600 Rhododendron simsii HOM05D004554 ORTHO05D005360 1.7e-31 139.8 77 87.0
FAN01G0304 Fragaria x ananassa HOM05D004554 ORTHO05D007400 2.2e-31 139.4 75 92.0
Os04g0503800 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 2.2e-31 139.4 81 79.0
Rhsim12G0192700 Rhododendron simsii HOM05D004554 ORTHO05D005360 2.2e-31 139.4 77 87.0
CAN.G395.49 Capsicum annuum HOM05D004554 ORTHO05D005360 2.9e-31 139.0 77 85.7
Lj1g0023737 Lotus japonicus HOM05D004554 ORTHO05D005360 4.9e-31 138.3 106 67.9
Hma1.2p1_1324F.1_g275710 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 8.4e-31 137.5 95 74.7
HanXRQChr09g0274941 Helianthus annuus HOM05D004554 ORTHO05D005360 1.4e-30 136.7 77 81.8
SalBow2G1085 Salvia bowleyana HOM05D004554 ORTHO05D005360 1.4e-30 136.7 77 84.4
SalBow3G2596 Salvia bowleyana HOM05D004554 ORTHO05D005360 1.4e-30 136.7 77 83.1
BcaB07g30930 Brassica carinata HOM05D004554 ORTHO05D005360 1.9e-30 136.3 73 89.0
Cc02_g38630 Coffea canephora HOM05D004554 ORTHO05D005360 2.4e-30 136.0 77 83.1
Hund06576 Selenicereus undatus HOM05D004554 ORTHO05D005360 2.4e-30 136.0 77 84.4
Ah.11g047570 Amaranthus hybridus HOM05D004554 ORTHO05D005360 3.2e-30 135.6 77 84.4
Thhalv10019800m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 4.2e-30 135.2 138 57.2
Oeu053426.1 Olea europaea HOM05D004554 ORTHO05D005360 4.2e-30 135.2 81 79.0
ATR0138G017 Amborella trichopoda HOM05D004554 ORTHO05D005360 5.5e-30 134.8 76 85.5
EL10Ac6g14261 Beta vulgaris HOM05D004554 ORTHO05D005360 2.7e-29 132.5 75 85.3
MCO03G231 Micromonas commoda HOM05D004554 ORTHO05D005360 6.7e-28 127.9 114 51.8
DCAR_025490 Daucus carota HOM05D004554 ORTHO05D005360 1.9e-27 126.3 74 78.4
unitig_899.g14783 Utricularia gibba HOM05D004554 ORTHO05D005360 5.6e-27 124.8 76 76.3
SGA_v2.0_scaffold117G32370 Striga asiatica HOM05D004554 ORTHO05D005360 1.1e-25 120.6 70 80.0
Lj5A69T38 Lonicera japonica HOM05D004554 ORTHO05D005360 1.2e-24 117.1 116 57.8
PRCOL_00001690 Prasinoderma coloniale HOM05D004554 ORTHO05D005360 1.3e-23 113.6 98 52.0
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 1.4e-22 110.2 107 51.4
Ca_17005_v3 Cicer arietinum L. HOM05D004554 ORTHO05D005360 1.9e-22 109.8 57 93.0
Medtr3g097015 Medicago truncatula HOM05D004554 ORTHO05D005360 2.5e-22 109.4 56 94.6
SMO244G0023 Selaginella moellendorffii HOM05D004554 ORTHO05D005360 1.0e-20 104.0 70 65.7
Lsat_1_v5_gn_5_132260 Lactuca sativa HOM05D004554 ORTHO05D005360 2.3e-20 102.8 71 70.4
C09p27060 Brassica napus HOM05D004554 ORTHO05D005360 3.0e-20 102.4 56 85.7
CBR_g36380 Chara braunii HOM05D004554 ORTHO05D005360 8.7e-20 100.9 75 56.0
Thhalv10001067m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 6.3e-18 94.7 50 88.0
TAR626G1579 Trochodendron aralioides HOM05D004554 ORTHO05D005360 6.3e-18 94.7 50 90.0
Carub.0002s0990 Capsella rubella HOM05D004554 ORTHO05D005360 6.9e-17 91.3 50 86.0
arahy.Tifrunner.gnm1.ann1.MTW2QA Arachis hypogaea HOM05D004554 ORTHO05D005360 4.2e-14 82.0 45 84.4
Lj9P502T35 Lonicera japonica HOM05D004554 ORTHO05D005360 7.2e-14 81.3 61 68.9
Sed0002995 Sechium edule HOM05D004554 ORTHO05D005360 6.7e-12 74.7 41 82.9
Eucgr.L03064 Eucalyptus grandis HOM05D004554 ORTHO05D005360 2.0e-08 63.2 30 93.3
QL11p051435 Quercus lobata HOM05D004554 ORTHO05D005360 1.3e-07 60.5 29 96.6
Rhsim12G0192800 Rhododendron simsii HOM05D004554 ORTHO05D005360 1.3e-07 60.5 30 86.7
RcHm_v2.0_Chr2g0154941 Rosa chinensis HOM05D004554 ORTHO05D005360 1.3e-07 60.5 32 84.4
Haze_26443 Corylus avellana HOM05D000849 ORTHO05D005360 1.9e-06 56.6 102 33.3


User provided reference genes

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