Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI75G0344 Tripterygium wilfordii HOM05D006855 ORTHO05D008695 3.2e-259 897.9 447 100.0
Potri.010G051200 Populus trichocarpa HOM05D006855 ORTHO05D008695 9.8e-168 594.0 447 66.4
Atru.chr11.2187 Acer truncatum HOM05D006855 ORTHO05D008695 1.8e-166 589.7 449 66.1
TAR629G1507 Trochodendron aralioides HOM05D006855 ORTHO05D008695 7.0e-166 587.8 448 66.3
Ciclev10031545m.g Citrus clementina HOM05D006855 ORTHO05D008695 8.6e-164 580.9 452 66.2
Duzib248G0606 Durio zibethinus HOM05D006855 ORTHO05D008695 6.1e-162 574.7 446 65.2
CiPaw.05G176800 Carya illinoinensis HOM05D006855 ORTHO05D008695 1.8e-161 573.2 446 65.9
FAN12G0810 Fragaria x ananassa HOM05D006855 ORTHO05D008695 2.6e-160 569.3 448 65.8
RcHm_v2.0_Chr4g0432431 Rosa chinensis HOM05D006855 ORTHO05D008695 9.8e-160 567.4 441 66.2
Thecc.02G266900 Theobroma cacao HOM05D006855 ORTHO05D008695 9.8e-160 567.4 445 64.5
Manes.12G019600 Manihot esculenta HOM05D006855 ORTHO05D008695 4.1e-158 562.0 402 68.4
FAN17G2133 Fragaria x ananassa HOM05D006855 ORTHO05D008695 2.7e-157 559.3 441 65.8
Dinv14753 Davidia involucrata HOM05D006855 ORTHO05D008695 6.0e-157 558.1 447 64.7
FAN22G2334 Fragaria x ananassa HOM05D006855 ORTHO05D008695 1.7e-156 556.6 439 65.8
GSVIVG01000584001 Vitis vinifera HOM05D006855 ORTHO05D008695 8.6e-156 554.3 447 64.0
FAN07G2733 Fragaria x ananassa HOM05D006855 ORTHO05D008695 1.1e-155 553.9 438 65.8
MD13G1105700 Malus domestica HOM05D006855 ORTHO05D008695 2.5e-155 552.7 447 63.1
Nn3g16630 Nelumbo nucifera HOM05D006855 ORTHO05D008695 9.5e-155 550.8 452 63.9
Haze_12292 Corylus avellana HOM05D006855 ORTHO05D008695 5.2e-153 545.0 531 57.6
Eucgr.H02451 Eucalyptus grandis HOM05D006855 ORTHO05D008695 1.2e-152 543.9 450 62.0
COL.COLO4_23530 Corchorus olitorius HOM05D006855 ORTHO05D008695 9.8e-152 540.8 403 66.0
CSS0002421 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 6.4e-151 538.1 450 62.2
Actinidia15119 Actinidia chinensis HOM05D006855 ORTHO05D008695 8.3e-151 537.7 447 62.0
Gohir.D12G150600 Gossypium hirsutum HOM05D006855 ORTHO05D008695 1.4e-150 537.0 445 60.7
Gorai.008G162100 Gossypium raimondii HOM05D006855 ORTHO05D008695 9.2e-150 534.3 445 60.4
THA.LOC104825678 Tarenaya hassleriana HOM05D006855 ORTHO05D008695 8.6e-148 527.7 422 62.1
Glyma.11G244400 Glycine max HOM05D006855 ORTHO05D008695 5.6e-147 525.0 418 63.6
Psat5g092640 Pisum sativum HOM05D006855 ORTHO05D008695 7.3e-147 524.6 420 62.4
TPR.G5676 Trifolium pratense HOM05D006855 ORTHO05D008695 9.5e-147 524.2 419 63.0
Gohir.A12G146000 Gossypium hirsutum HOM05D006855 ORTHO05D008695 3.6e-146 522.3 439 60.8
arahy.Tifrunner.gnm1.ann1.FYV5AX Arachis hypogaea HOM05D006855 ORTHO05D008695 1.1e-145 520.8 447 60.4
Aqoxy3G01366 Aquilegia oxysepala HOM05D006855 ORTHO05D008695 2.3e-145 519.6 448 60.9
Nitab4.5_0015117g0010 Nicotiana tabacum HOM05D006855 ORTHO05D008695 4.0e-145 518.8 446 61.0
Aqoxy3G00656 Aquilegia oxysepala HOM05D006855 ORTHO05D008695 5.2e-145 518.5 448 60.9
PSO210G7557 Papaver somniferum HOM05D006855 ORTHO05D008695 1.5e-144 516.9 456 58.6
Phvul.001G256400 Phaseolus vulgaris HOM05D006855 ORTHO05D008695 7.5e-144 514.6 419 62.8
ClCG05G026110 Citrullus lanatus HOM05D006855 ORTHO05D008695 9.9e-144 514.2 442 59.7
PSO478G2928 Papaver somniferum HOM05D006855 ORTHO05D008695 9.9e-144 514.2 456 58.8
Solyc01g008900.4 Solanum lycopersicum HOM05D006855 ORTHO05D008695 3.7e-143 512.3 442 59.0
HanXRQChr12g0371791 Helianthus annuus HOM05D006855 ORTHO05D008695 4.9e-143 511.9 431 61.5
Medtr3g086360 Medicago truncatula HOM05D006855 ORTHO05D008695 6.4e-143 511.5 418 62.7
Prupe.1G240700 Prunus persica HOM05D006855 ORTHO05D008695 1.1e-142 510.8 360 71.9
CANSAT01G1415 Cannabis sativa HOM05D006855 ORTHO05D008695 1.4e-142 510.4 452 59.3
AUR62024216 Chenopodium quinoa HOM05D006855 ORTHO05D008695 4.1e-142 508.8 447 57.5
CAN.G379.20 Capsicum annuum HOM05D006855 ORTHO05D008695 7.1e-142 508.1 446 58.5
Lalb_Chr11g0075551 Lupinus albus HOM05D006855 ORTHO05D008695 9.2e-142 507.7 426 60.3
Lj6g0028045 Lotus japonicus HOM05D006855 ORTHO05D008695 2.1e-141 506.5 416 61.5
Sopen01g004390 Solanum pennellii HOM05D006855 ORTHO05D008695 1.7e-140 503.4 442 58.1
MELO3C011916.2 Cucumis melo HOM05D006855 ORTHO05D008695 3.0e-140 502.7 439 59.5
PGR083G2447 Punica granatum HOM05D006855 ORTHO05D008695 8.6e-140 501.1 448 60.5
PGSC0003DMG400022710 Solanum tuberosum HOM05D006855 ORTHO05D008695 8.6e-140 501.1 442 57.9
VMungo1383G3215 Vigna mungo HOM05D000933 ORTHO05D000820 1.1e-139 500.7 409 63.1
CsaV3_5G030740 Cucumis sativus L. HOM05D006855 ORTHO05D008695 3.3e-139 499.2 444 59.2
Peaxi162Scf00050g00819 Petunia axillaris HOM05D006855 ORTHO05D008695 3.3e-139 499.2 443 59.4
Thhalv10004274m.g Eutrema salsugineum HOM05D006855 ORTHO05D008695 4.3e-139 498.8 420 59.3
Sed0018660 Sechium edule HOM05D006855 ORTHO05D008695 4.3e-139 498.8 424 60.6
Lsat_1_v5_gn_8_153661 Lactuca sativa HOM05D006855 ORTHO05D008695 7.3e-139 498.0 434 57.8
C07p35130 Brassica napus HOM05D006855 ORTHO05D008695 7.6e-136 488.0 422 60.2
BolC7t44041H Brassica oleracea HOM05D006855 ORTHO05D008695 1.7e-135 486.9 422 59.5
Sp2g15320 Schrenkiella parvula HOM05D006855 ORTHO05D008695 1.7e-135 486.9 421 58.7
MSTRG.548 Avicennia marina HOM05D006855 ORTHO05D008695 2.9e-135 486.1 417 59.5
Carub.0005s0400 Capsella rubella HOM05D006855 ORTHO05D008695 4.9e-135 485.3 413 59.3
BcaC06g31090 Brassica carinata HOM05D006855 ORTHO05D008695 6.4e-135 485.0 420 60.0
Cc11_g16140 Coffea canephora HOM05D006855 ORTHO05D008695 6.4e-135 485.0 442 57.7
CARHR147120 Cardamine hirsuta HOM05D006855 ORTHO05D008695 1.9e-134 483.4 431 57.8
BcaC06g33927 Brassica carinata HOM05D006855 ORTHO05D008695 4.2e-134 482.3 436 57.3
Ah.02g130370 Amaranthus hybridus HOM05D006855 ORTHO05D008695 1.2e-133 480.7 408 58.6
Aa31LG2G6230 Aethionema arabicum HOM05D006855 ORTHO05D008695 2.7e-133 479.6 425 57.2
AL5G14830 Arabidopsis lyrata HOM05D006855 ORTHO05D008695 4.6e-133 478.8 430 58.1
Lj3A1062T101 Lonicera japonica HOM05D006855 ORTHO05D008695 6.0e-133 478.4 405 62.7
Migut.K00633 Erythranthe guttata HOM05D006855 ORTHO05D008695 2.8e-130 469.5 406 59.9
BraA06t27139Z Brassica rapa HOM05D006855 ORTHO05D008695 6.2e-130 468.4 443 56.7
A06p42230 Brassica napus HOM05D006855 ORTHO05D008695 1.1e-129 467.6 443 56.7
ATR0796G133 Amborella trichopoda HOM05D006855 ORTHO05D008695 2.4e-129 466.5 426 57.5
EL10As2g23185 Beta vulgaris HOM05D006855 ORTHO05D008695 1.2e-128 464.2 447 55.5
AUR62005523 Chenopodium quinoa HOM05D006855 ORTHO05D008695 7.6e-128 461.5 385 60.0
CDE02G0600 Ceratophyllum demersum HOM05D006855 ORTHO05D008695 2.2e-127 459.9 425 57.2
SalBow2G0666 Salvia bowleyana HOM05D006855 ORTHO05D008695 1.7e-124 450.3 458 54.1
ECA233G5842 Erigeron canadensis HOM05D000068 ORTHO05D000084 5.6e-123 445.3 386 60.6
SGA_v2.0_scaffold100G29585 Striga asiatica HOM05D006855 ORTHO05D008695 4.8e-122 442.2 414 56.3
Nitab4.5_0000718g0180 Nicotiana tabacum HOM05D006855 ORTHO05D008695 1.6e-117 427.2 447 53.2
vmacro16160 Vaccinium macrocarpon HOM05D006855 ORTHO05D008695 2.5e-115 419.9 394 56.9
MBI19_g16323_MAGBIO Magnolia biondii HOM05D006855 ORTHO05D008695 2.4e-113 413.3 379 58.6
HPP92_023148 Vanilla planifolia HOM05D006855 ORTHO05D008695 1.3e-108 397.5 397 51.4
AT3G26115 Arabidopsis thaliana HOM05D006855 ORTHO05D008695 3.7e-106 389.4 340 57.6
QL03p056156 Quercus lobata HOM05D006855 ORTHO05D008695 5.8e-104 382.1 301 68.1
Ca_25129_v3 Cicer arietinum L. HOM05D006855 ORTHO05D008695 1.0e-103 381.3 278 67.6
unitig_699.g19941 Utricularia gibba HOM05D002671 ORTHO05D001380 1.0e-100 371.3 404 49.8
Zm00001eb155910 Zea mays HOM05D006855 ORTHO05D008695 3.1e-97 359.8 397 49.1
Mapoly0058s0079 Marchantia polymorpha HOM05D006855 ORTHO05D008695 1.0e-95 354.8 424 45.3
Pp3c22_21870 Physcomitrium patens HOM05D006855 ORTHO05D008695 2.1e-93 347.1 352 51.7
CSS0027349 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 4.3e-91 339.3 409 47.2
Sc11g0000830 Simmondsia chinensis HOM05D006855 ORTHO05D008695 2.2e-87 327.0 277 61.0
FvH4_4g25240 Fragaria vesca HOM05D006855 ORTHO05D008695 7.9e-85 318.5 271 61.6
Hund25410 Selenicereus undatus HOM05D006855 ORTHO05D008695 1.0e-79 301.6 325 53.5
SMO203G0085 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 1.7e-79 300.8 344 47.1
SEGI_15055 Sequoiadendron giganteum HOM05D006855 ORTHO05D008695 5.2e-76 289.3 279 54.1
Cpa.g.sc33.79 Carica papaya HOM05D006855 ORTHO05D008695 4.8e-66 256.1 179 67.0
Os01g0695600 Oryza sativa ssp. japonica HOM05D006855 ORTHO05D008695 1.1e-62 245.0 407 39.8
SMO203G0059 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 8.8e-60 235.3 355 39.4
SMO327G0033 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 1.5e-59 234.6 307 43.6
Carub.0005s0511 Capsella rubella HOM05D006855 ORTHO05D008695 1.3e-58 231.5 243 51.4
Cre01.g031850 Chlamydomonas reinhardtii HOM05D006855 ORTHO05D008695 2.4e-57 227.3 433 34.6
arahy.Tifrunner.gnm1.ann1.74BAAJ Arachis hypogaea HOM05D006855 ORTHO05D008695 8.0e-53 212.2 220 53.6
QL03p056162 Quercus lobata HOM05D006855 ORTHO05D008695 3.0e-52 210.3 134 73.1
SEGI_08498 Sequoiadendron giganteum HOM05D006855 ORTHO05D008695 2.6e-51 207.2 174 56.9
FAN18G3688 Fragaria x ananassa HOM05D006855 ORTHO05D008695 7.5e-51 205.7 156 67.9
FAN14G3171 Fragaria x ananassa HOM05D006855 ORTHO05D008695 2.8e-50 203.8 144 70.1
FAN08G3042 Fragaria x ananassa HOM05D006855 ORTHO05D008695 2.4e-49 200.7 150 68.0
SMO203G0223 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 5.8e-43 179.5 252 40.9
SMO327G0043 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 6.6e-39 166.0 280 37.5
FAN15G2953 Fragaria x ananassa HOM05D006855 ORTHO05D008695 5.8e-35 152.9 116 66.4
FAN23G2199 Fragaria x ananassa HOM05D006855 ORTHO05D008695 6.4e-34 149.4 113 66.4
Sabra10G0018700 Salix brachista HOM05D000933 ORTHO05D000820 2.4e-33 147.5 141 54.6
CSS0015338 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 1.3e-23 115.2 119 49.6
CSS0040008 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 1.2e-21 108.6 134 44.0
Sabra12G0027400 Salix brachista HOM05D005071 ORTHO05D006069 9.3e-17 92.4 351 25.6
ECA233G3820 Erigeron canadensis HOM05D006855 ORTHO05D008695 3.5e-16 90.5 111 47.7
MELO3C001942.2 Cucumis melo HOM05D005071 ORTHO05D006069 1.1e-14 85.5 344 25.0
CsaV3_1G005050 Cucumis sativus L. HOM05D005071 ORTHO05D006069 1.1e-14 85.5 344 25.0
Sopen03g028930 Solanum pennellii HOM05D005071 ORTHO05D006069 1.9e-14 84.7 348 24.4
MSTRG.23199 Avicennia marina HOM05D005071 ORTHO05D006069 2.5e-14 84.3 349 24.6
Pp3c15_20550 Physcomitrium patens HOM05D005071 ORTHO05D006069 2.5e-14 84.3 347 25.1
MCO03G464 Micromonas commoda HOM05D005071 ORTHO05D006069 3.3e-14 84.0 340 26.5
Potri.012G038900 Populus trichocarpa HOM05D005071 ORTHO05D006069 3.3e-14 84.0 348 25.9
PGSC0003DMG400031041 Solanum tuberosum HOM05D005071 ORTHO05D006069 3.3e-14 84.0 346 23.4
TWI81G0487 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 5.6e-14 83.2 341 25.8
Solyc03g098230.3 Solanum lycopersicum HOM05D005071 ORTHO05D006069 7.3e-14 82.8 348 24.1
TWI81G0721 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 7.3e-14 82.8 341 25.8
Actinidia17702 Actinidia chinensis HOM05D005071 ORTHO05D006069 2.1e-13 81.3 342 25.1
Lj5C165T19 Lonicera japonica HOM05D005071 ORTHO05D006069 6.2e-13 79.7 350 25.4
Os02g0773300 Oryza sativa ssp. japonica HOM05D005071 ORTHO05D006069 6.2e-13 79.7 348 25.0
Sed0005435 Sechium edule HOM05D005071 ORTHO05D006069 6.2e-13 79.7 344 24.7
Zm00001eb256470 Zea mays HOM05D005071 ORTHO05D006069 6.2e-13 79.7 355 24.8
SMO364G0181 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 8.1e-13 79.3 346 24.9
TAR622G0642 Trochodendron aralioides HOM05D005071 ORTHO05D006069 8.1e-13 79.3 354 24.0
Dinv06025 Davidia involucrata HOM05D005071 ORTHO05D006069 1.1e-12 79.0 347 24.2
Rhsim08G0124200 Rhododendron simsii HOM05D005071 ORTHO05D006069 1.1e-12 79.0 374 24.6
Aqoxy3G04132 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 1.4e-12 78.6 345 24.6
CAN.G637.11 Capsicum annuum HOM05D005071 ORTHO05D006069 1.4e-12 78.6 357 22.4
SGA_v2.0_scaffold25G10767 Striga asiatica HOM05D005071 ORTHO05D006069 1.4e-12 78.6 338 26.0
Actinidia06302 Actinidia chinensis HOM05D005071 ORTHO05D006069 3.1e-12 77.4 344 25.6
Oeu038408.4 Olea europaea HOM05D005071 ORTHO05D006069 3.1e-12 77.4 377 23.9
HPP92_009318 Vanilla planifolia HOM05D005071 ORTHO05D006069 3.1e-12 77.4 355 25.6
CANSAT80G1805 Cannabis sativa HOM05D005071 ORTHO05D006069 4.0e-12 77.0 347 25.1
Migut.O00239 Erythranthe guttata HOM05D005071 ORTHO05D006069 4.0e-12 77.0 343 24.8
MD14G1242800 Malus domestica HOM05D005071 ORTHO05D006069 4.0e-12 77.0 343 24.8
AT1G48420 Arabidopsis thaliana HOM05D005071 ORTHO05D006069 5.3e-12 76.6 336 24.4
Gorai.007G002100 Gossypium raimondii HOM05D005071 ORTHO05D006069 6.9e-12 76.3 344 25.3
Lsat_1_v5_gn_0_10481 Lactuca sativa HOM05D005071 ORTHO05D006069 6.9e-12 76.3 345 24.3
VMungo1383G3417 Vigna mungo HOM05D006350 ORTHO05D007850 6.9e-12 76.3 67 58.2
Gohir.A11G001600 Gossypium hirsutum HOM05D005071 ORTHO05D006069 9.0e-12 75.9 346 24.9
Mapoly0080s0004 Marchantia polymorpha HOM05D005071 ORTHO05D006069 9.0e-12 75.9 339 24.8
Cc04_g09040 Coffea canephora HOM05D005071 ORTHO05D006069 1.2e-11 75.5 346 22.5
Eucgr.H00596 Eucalyptus grandis HOM05D005071 ORTHO05D006069 1.5e-11 75.1 344 24.4
Gohir.D11G001200 Gossypium hirsutum HOM05D005071 ORTHO05D006069 1.5e-11 75.1 344 25.0
HanXRQChr16g0503311 Helianthus annuus HOM05D005071 ORTHO05D006069 1.5e-11 75.1 344 23.8
PGR083G1095 Punica granatum HOM05D005071 ORTHO05D006069 1.5e-11 75.1 354 24.3
ECA232G0859 Erigeron canadensis HOM05D005071 ORTHO05D006069 2.0e-11 74.7 347 23.9
Hma1.2p1_0493F.1_g165090 Hydrangea macrophylla HOM05D005071 ORTHO05D006069 4.4e-11 73.6 348 23.6
Sc24g0002670 Simmondsia chinensis HOM05D005071 ORTHO05D006069 4.4e-11 73.6 340 23.8
ATR0598G263 Amborella trichopoda HOM05D005071 ORTHO05D006069 1.3e-10 72.0 352 23.0
CDE05G0597 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 1.3e-10 72.0 326 24.5
Thecc.03G069100 Theobroma cacao HOM05D005071 ORTHO05D006069 1.7e-10 71.6 352 23.9
Ciclev10024301m.g Citrus clementina HOM05D005071 ORTHO05D006069 4.9e-10 70.1 335 25.4
Aqoxy3G04133 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 8.4e-10 69.3 346 23.4
CDE11G0073 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 8.4e-10 69.3 341 24.3
MD06G1235700 Malus domestica HOM05D005071 ORTHO05D006069 4.2e-09 67.0 344 25.6
Sc24g0002660 Simmondsia chinensis HOM05D005071 ORTHO05D006069 9.3e-09 65.9 336 23.2
EL10Ac8g19579 Beta vulgaris HOM05D005071 ORTHO05D006069 7.9e-08 62.8 335 25.1


User provided reference genes

Program Settings