Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 2.6e-58 228.8 142 100.0
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 4.1e-27 125.2 139 59.7
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 2.0e-26 122.9 137 51.8
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 2.0e-26 122.9 142 57.0
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 7.7e-26 120.9 138 63.0
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 1.3e-25 120.2 141 54.6
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 2.9e-25 119.0 138 51.4
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 5.0e-25 118.2 146 57.5
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 6.5e-25 117.9 146 54.1
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 1.9e-24 116.3 139 56.1
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 3.2e-24 115.5 157 48.4
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 9.4e-24 114.0 146 56.2
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 9.4e-24 114.0 135 47.4
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 4.7e-23 111.7 163 44.2
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 4.7e-23 111.7 126 52.4
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 1.4e-22 110.2 126 51.6
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 1.4e-22 110.2 145 46.9
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 2.3e-22 109.4 124 51.6
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 2.3e-22 109.4 138 48.6
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 4.0e-22 108.6 126 51.6
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 4.0e-22 108.6 157 49.0
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 8.8e-22 107.5 137 54.0
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 1.2e-21 107.1 143 44.1
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.0e-21 106.3 134 62.7
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 2.6e-21 105.9 149 57.0
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 3.4e-21 105.5 148 48.6
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 4.4e-21 105.1 139 52.5
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 1.3e-20 103.6 135 43.0
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 1.3e-20 103.6 135 43.0
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 3.7e-20 102.1 135 53.3
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 6.3e-20 101.3 120 48.3
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 6.3e-20 101.3 141 51.1
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 8.3e-20 100.9 132 44.7
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 8.3e-20 100.9 146 57.5
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 8.3e-20 100.9 146 57.5
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 8.3e-20 100.9 135 44.4
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 1.4e-19 100.1 151 43.7
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 2.4e-19 99.4 126 51.6
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 3.1e-19 99.0 140 50.7
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 3.1e-19 99.0 132 47.7
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 7.0e-19 97.8 134 51.5
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 7.0e-19 97.8 130 49.2
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 9.1e-19 97.4 139 46.8
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 1.2e-18 97.1 135 50.4
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 1.2e-18 97.1 129 46.5
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 1.6e-18 96.7 129 51.2
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 1.6e-18 96.7 132 44.7
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 1.6e-18 96.7 132 44.7
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 1.6e-18 96.7 132 44.7
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 2.0e-18 96.3 151 43.0
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 2.7e-18 95.9 131 49.6
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 4.5e-18 95.1 117 52.1
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 4.5e-18 95.1 132 48.5
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 4.5e-18 95.1 132 48.5
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 4.5e-18 95.1 132 48.5
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 4.5e-18 95.1 72 68.1
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 4.5e-18 95.1 98 64.3
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 5.9e-18 94.7 131 45.0
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 7.7e-18 94.4 130 53.1
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 1.0e-17 94.0 132 43.9
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.3e-17 93.6 71 60.6
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.3e-17 93.6 118 50.8
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 2.3e-17 92.8 132 45.5
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 2.9e-17 92.4 145 43.4
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 3.8e-17 92.0 148 45.3
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 6.5e-17 91.3 132 45.5
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 6.5e-17 91.3 132 43.2
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 6.5e-17 91.3 124 51.6
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 8.6e-17 90.9 73 65.8
Cc11_g12330 Coffea canephora HOM05D003853 ORTHO05D004171 1.5e-16 90.1 140 50.7
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 1.5e-16 90.1 149 42.3
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 1.9e-16 89.7 152 41.4
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 1.9e-16 89.7 103 48.5
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 1.9e-16 89.7 149 42.3
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 2.5e-16 89.4 128 44.5
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 2.5e-16 89.4 133 45.9
Manes.01G030000 Manihot esculenta HOM05D003853 ORTHO05D004171 3.3e-16 89.0 110 51.8
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 4.2e-16 88.6 86 55.8
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 5.5e-16 88.2 102 53.9
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 7.2e-16 87.8 137 43.1
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 9.5e-16 87.4 128 43.8
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 9.5e-16 87.4 149 41.6
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 9.5e-16 87.4 73 61.6
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 1.2e-15 87.0 129 42.6
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 1.6e-15 86.7 84 54.8
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 1.6e-15 86.7 70 65.7
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 1.6e-15 86.7 111 53.2
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 2.1e-15 86.3 73 61.6
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 2.1e-15 86.3 85 58.8
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 2.8e-15 85.9 74 60.8
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 6.1e-15 84.7 128 50.8
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 6.1e-15 84.7 126 53.2
Migut.E00060 Erythranthe guttata HOM05D003853 ORTHO05D004171 6.1e-15 84.7 146 43.8
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 8.0e-15 84.3 128 49.2
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 8.0e-15 84.3 132 44.7
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 8.0e-15 84.3 80 58.8
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 8.0e-15 84.3 129 42.6
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 1.0e-14 84.0 74 63.5
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.0e-14 84.0 84 56.0
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 1.0e-14 84.0 95 52.6
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 1.0e-14 84.0 69 68.1
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 1.0e-14 84.0 82 57.3
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 1.4e-14 83.6 143 39.9
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 1.4e-14 83.6 73 58.9
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 1.8e-14 83.2 128 46.1
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 1.8e-14 83.2 128 47.7
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 2.3e-14 82.8 128 50.8
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 2.3e-14 82.8 72 55.6
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 2.3e-14 82.8 141 50.4
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 4.0e-14 82.0 74 59.5
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 4.0e-14 82.0 132 40.2
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 5.2e-14 81.6 127 48.0
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 5.2e-14 81.6 69 62.3
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 6.8e-14 81.3 74 58.1
AUR62003131 Chenopodium quinoa HOM05D003853 ORTHO05D004171 8.9e-14 80.9 139 40.3
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 8.9e-14 80.9 111 44.1
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 8.9e-14 80.9 111 44.1
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.0e-13 79.7 134 45.5
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 2.0e-13 79.7 135 39.3
Nitab4.5_0000334g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 2.0e-13 79.7 87 48.3
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 2.0e-13 79.7 82 53.7
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 2.6e-13 79.3 91 46.2
FAN17G1589 Fragaria x ananassa HOM05D003853 ORTHO05D004171 3.4e-13 79.0 148 42.6
Psat2g127960 Pisum sativum HOM05D003853 ORTHO05D004171 3.4e-13 79.0 78 57.7
Prupe.1G282500 Prunus persica HOM05D003853 ORTHO05D004171 3.4e-13 79.0 130 48.5
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 4.4e-13 78.6 122 49.2
FAN12G3704 Fragaria x ananassa HOM05D002141 ORTHO05D002119 4.4e-13 78.6 149 43.6
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 4.4e-13 78.6 145 47.6
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 4.4e-13 78.6 144 48.6
Ah.03g139150 Amaranthus hybridus HOM05D003853 ORTHO05D004171 5.7e-13 78.2 124 41.1
SEGI_33923 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 7.5e-13 77.8 87 51.7
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 9.8e-13 77.4 76 56.6
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 1.3e-12 77.0 81 55.6
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 1.3e-12 77.0 81 55.6
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 1.3e-12 77.0 81 55.6
Psat7g135200 Pisum sativum HOM05D003853 ORTHO05D004171 1.7e-12 76.6 142 40.1
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 2.8e-12 75.9 161 42.2
Sopen05g007400 Solanum pennellii HOM05D003853 ORTHO05D004171 2.8e-12 75.9 86 46.5
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 3.7e-12 75.5 69 55.1
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 3.7e-12 75.5 131 43.5
HPP92_023625 Vanilla planifolia HOM05D003853 ORTHO05D004171 3.7e-12 75.5 127 37.8
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 4.9e-12 75.1 128 46.1
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 6.3e-12 74.7 136 39.7
MSTRG.735 Avicennia marina HOM05D003853 ORTHO05D004171 8.3e-12 74.3 70 55.7
MD16G1064200 Malus domestica HOM05D003853 ORTHO05D004171 1.4e-11 73.6 73 56.2
Medtr4g082860 Medicago truncatula HOM05D003853 ORTHO05D004171 1.4e-11 73.6 128 42.2
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 1.4e-11 73.6 142 44.4
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 1.4e-11 73.6 79 48.1
CAN.G1340.8 Capsicum annuum HOM05D003853 ORTHO05D004171 2.4e-11 72.8 87 43.7
Medtr5g043660 Medicago truncatula HOM05D003853 ORTHO05D004171 2.4e-11 72.8 109 47.7
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 2.4e-11 72.8 86 47.7
vmacro22354 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 2.4e-11 72.8 80 55.0
ECA246G1290 Erigeron canadensis HOM05D003853 ORTHO05D004171 3.1e-11 72.4 82 48.8
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 3.1e-11 72.4 81 51.9
Ca_04944_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 4.1e-11 72.0 107 44.9
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 4.1e-11 72.0 69 49.3
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 5.4e-11 71.6 91 50.5
TPR.G24450 Trifolium pratense HOM05D003853 ORTHO05D004171 5.4e-11 71.6 118 45.8
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 5.4e-11 71.6 96 46.9
A08p32170 Brassica napus HOM05D003853 ORTHO05D004171 1.2e-10 70.5 71 52.1
Lalb_Chr17g0341041 Lupinus albus HOM05D003853 ORTHO05D004171 1.2e-10 70.5 117 38.5
SEGI_07999 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 1.2e-10 70.5 87 48.3
BraA08t35141Z Brassica rapa HOM05D003853 ORTHO05D004171 1.6e-10 70.1 80 48.8
Zm00001eb334140 Zea mays HOM05D003853 ORTHO05D004171 3.5e-10 68.9 74 51.4
Solyc05g012570.3 Solanum lycopersicum HOM05D003853 ORTHO05D004171 4.5e-10 68.6 82 46.3
TPR.G34063 Trifolium pratense HOM05D003853 ORTHO05D004171 4.5e-10 68.6 66 59.1
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 1.7e-09 66.6 77 45.5
ATR0579G128 Amborella trichopoda HOM05D003853 ORTHO05D004171 2.3e-09 66.2 65 53.8
Lsat_1_v5_gn_3_56161 Lactuca sativa HOM05D003853 ORTHO05D004171 2.3e-09 66.2 76 47.4
HanXRQChr15g0477051 Helianthus annuus HOM05D003853 ORTHO05D004171 2.9e-09 65.9 75 46.7
Os10g0330000 Oryza sativa ssp. japonica HOM05D003853 ORTHO05D004171 6.6e-09 64.7 70 50.0
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 2.5e-08 62.8 71 49.3
vmacro22463 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 4.3e-08 62.0 69 56.5
CANSAT64G1198 Cannabis sativa HOM05D003853 ORTHO05D004171 1.2e-07 60.5 117 42.7
Lj2g0020869 Lotus japonicus HOM05D003853 ORTHO05D004171 1.6e-07 60.1 113 37.2
CDE02G3795 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 3.6e-07 58.9 55 58.2
THA.LOC104805946 Tarenaya hassleriana HOM05D003853 ORTHO05D004171 8.0e-07 57.8 92 39.1
FAN07G0344 Fragaria x ananassa HOM05D002141 ORTHO05D002119 1.0e-06 57.4 65 46.2
MD13G1065600 Malus domestica HOM05D003853 ORTHO05D004171 2.3e-06 56.2 70 50.0


User provided reference genes

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