Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI74G1540 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 1.2e-91 339.7 156 100.0
Cfa006798 Carpinus fangiana HOM05D004858 ORTHO05D005600 1.0e-42 177.2 99 80.8
QL06p038187 Quercus lobata HOM05D004858 ORTHO05D005600 2.9e-42 175.6 98 78.6
Gorai.003G034000 Gossypium raimondii HOM05D004858 ORTHO05D005600 8.4e-42 174.1 101 78.2
Gohir.D03G032400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 2.5e-41 172.6 101 78.2
Gohir.A11G210700 Gossypium hirsutum HOM05D004858 ORTHO05D005600 3.2e-41 172.2 100 78.0
arahy.Tifrunner.gnm1.ann1.YV33P0 Arachis hypogaea HOM05D004858 ORTHO05D005600 1.2e-40 170.2 100 74.0
TWI77G0309 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 1.2e-40 170.2 98 78.6
Glyma.05G110100 Glycine max HOM05D004858 ORTHO05D005600 1.6e-40 169.9 99 74.7
CiPaw.07G039500 Carya illinoinensis HOM05D004858 ORTHO05D005600 2.1e-40 169.5 99 76.8
Gohir.A02G148000 Gossypium hirsutum HOM05D004858 ORTHO05D005600 2.1e-40 169.5 101 76.2
Glyma.17G157000 Glycine max HOM05D004858 ORTHO05D005600 2.7e-40 169.1 99 74.7
VMungo0251G0206 Vigna mungo HOM05D004858 ORTHO05D005600 7.9e-40 167.5 99 75.8
Gohir.D11G212400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.3e-39 166.8 98 76.5
Gorai.007G228300 Gossypium raimondii HOM05D004858 ORTHO05D005600 1.3e-39 166.8 98 76.5
CiPaw.08G148200 Carya illinoinensis HOM05D004858 ORTHO05D005600 1.8e-39 166.4 99 73.7
Duzib187G0061 Durio zibethinus HOM05D004858 ORTHO05D005600 1.8e-39 166.4 100 74.0
Manes.12G119200 Manihot esculenta HOM05D004858 ORTHO05D005600 1.8e-39 166.4 103 76.7
THA.LOC104804193 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 1.8e-39 166.4 100 73.0
Haze_03960 Corylus avellana HOM05D004858 ORTHO05D005600 2.3e-39 166.0 89 85.4
CANSAT01G1371 Cannabis sativa HOM05D004858 ORTHO05D005600 3.0e-39 165.6 99 75.8
Eucgr.I00649 Eucalyptus grandis HOM05D004858 ORTHO05D005600 3.0e-39 165.6 100 76.0
Potri.007G008800 Populus trichocarpa HOM05D004858 ORTHO05D005600 3.9e-39 165.2 102 75.5
PGR102G0524 Punica granatum HOM05D004858 ORTHO05D005600 5.1e-39 164.9 100 77.0
Atru.chr3.1087 Acer truncatum HOM05D004858 ORTHO05D005600 6.7e-39 164.5 101 75.2
THA.LOC104807646 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 6.7e-39 164.5 100 74.0
Dinv23069 Davidia involucrata HOM05D004858 ORTHO05D005600 1.5e-38 163.3 98 79.6
COL.COLO4_11647 Corchorus olitorius HOM05D004858 ORTHO05D005600 1.9e-38 162.9 101 74.3
Cpa.g.sc129.47 Carica papaya HOM05D004858 ORTHO05D005600 2.5e-38 162.5 100 71.0
Duzib147G0425 Durio zibethinus HOM05D004858 ORTHO05D005600 2.5e-38 162.5 99 73.7
Phvul.003G231600 Phaseolus vulgaris HOM05D004858 ORTHO05D005600 2.5e-38 162.5 99 74.7
Prupe.6G213100 Prunus persica HOM05D004858 ORTHO05D005600 2.5e-38 162.5 98 76.5
ClCG10G008050 Citrullus lanatus HOM05D004858 ORTHO05D005600 4.3e-38 161.8 100 75.0
Ca_22084_v3 Cicer arietinum L. HOM05D004858 ORTHO05D005600 7.4e-38 161.0 105 72.4
FvH4_1g18620 Fragaria vesca HOM05D004858 ORTHO05D005600 9.7e-38 160.6 103 73.8
FAN19G1409 Fragaria x ananassa HOM05D004858 ORTHO05D005600 9.7e-38 160.6 103 73.8
FAN23G1848 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.6e-37 159.8 103 73.8
Lj4g0010254 Lotus japonicus HOM05D004858 ORTHO05D005600 2.2e-37 159.5 99 74.7
CsaV3_3G007040 Cucumis sativus L. HOM05D004858 ORTHO05D005600 2.8e-37 159.1 100 73.0
RcHm_v2.0_Chr2g0109411 Rosa chinensis HOM05D004858 ORTHO05D005600 2.8e-37 159.1 98 74.5
FAN26G1754 Fragaria x ananassa HOM05D004858 ORTHO05D005600 3.7e-37 158.7 103 72.8
FAN28G0049 Fragaria x ananassa HOM05D004858 ORTHO05D005600 3.7e-37 158.7 103 72.8
Lalb_Chr09g0329381 Lupinus albus HOM05D004858 ORTHO05D005600 4.8e-37 158.3 102 73.5
Lalb_Chr16g0385901 Lupinus albus HOM05D004858 ORTHO05D005600 4.8e-37 158.3 102 73.5
MD02G1193900 Malus domestica HOM05D004858 ORTHO05D005600 1.4e-36 156.8 98 73.5
THA.LOC104824932 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 1.4e-36 156.8 100 71.0
Lalb_Chr05g0220461 Lupinus albus HOM05D004858 ORTHO05D005600 1.8e-36 156.4 101 74.3
Ciclev10026828m.g Citrus clementina HOM05D004858 ORTHO05D005600 5.3e-36 154.8 101 73.3
Peaxi162Scf00118g01314 Petunia axillaris HOM05D004858 ORTHO05D005600 5.3e-36 154.8 100 71.0
CARHR246220 Cardamine hirsuta HOM05D004858 ORTHO05D005600 6.9e-36 154.5 99 71.7
Manes.13G106700 Manihot esculenta HOM05D004858 ORTHO05D005600 6.9e-36 154.5 103 73.8
Thecc.01G079800 Theobroma cacao HOM05D004858 ORTHO05D005600 2.6e-35 152.5 89 77.5
Carub.0007s0239 Capsella rubella HOM05D004858 ORTHO05D005600 3.4e-35 152.1 99 70.7
arahy.Tifrunner.gnm1.ann1.J6YKXI Arachis hypogaea HOM05D004858 ORTHO05D005600 4.5e-35 151.8 88 75.0
MSTRG.23644 Avicennia marina HOM05D004858 ORTHO05D005600 4.5e-35 151.8 103 69.9
AL7G12840 Arabidopsis lyrata HOM05D004858 ORTHO05D005600 5.9e-35 151.4 99 70.7
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 1.3e-34 150.2 98 72.4
Medtr4g097800 Medicago truncatula HOM05D004858 ORTHO05D005600 1.7e-34 149.8 104 70.2
Duzib264G0490 Durio zibethinus HOM05D004858 ORTHO05D005600 2.2e-34 149.4 100 70.0
TPR.G22417 Trifolium pratense HOM05D004858 ORTHO05D005600 2.2e-34 149.4 104 70.2
A08p22870 Brassica napus HOM05D004858 ORTHO05D005600 6.5e-34 147.9 99 68.7
MBI16_g31809_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 6.5e-34 147.9 95 74.7
CSS0041224 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 8.5e-34 147.5 99 71.7
CSS0047057 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 8.5e-34 147.5 99 71.7
CDE02G3413 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 8.5e-34 147.5 98 70.4
Nn6g34570 Nelumbo nucifera HOM05D004858 ORTHO05D005600 8.5e-34 147.5 98 71.4
Sp7g35470 Schrenkiella parvula HOM05D004858 ORTHO05D005600 8.5e-34 147.5 99 68.7
TAR628G1120 Trochodendron aralioides HOM05D004858 ORTHO05D005600 8.5e-34 147.5 95 73.7
Thhalv10026651m.g Eutrema salsugineum HOM05D004858 ORTHO05D005600 1.1e-33 147.1 99 68.7
MBI16_g05028_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 1.1e-33 147.1 97 70.1
Sed0006730 Sechium edule HOM05D004858 ORTHO05D005600 1.1e-33 147.1 99 67.7
AT4G37830 Arabidopsis thaliana HOM05D004858 ORTHO05D005600 1.4e-33 146.7 99 67.7
Sc16g0000840 Simmondsia chinensis HOM05D004858 ORTHO05D005600 1.4e-33 146.7 103 66.0
BcaC01g00373 Brassica carinata HOM05D004858 ORTHO05D005600 1.9e-33 146.4 92 71.7
BolC3t20143H Brassica oleracea HOM05D004858 ORTHO05D005600 1.9e-33 146.4 92 71.7
GSVIVG01006593001 Vitis vinifera HOM05D004858 ORTHO05D005600 1.9e-33 146.4 100 72.0
Actinidia36402 Actinidia chinensis HOM05D004858 ORTHO05D005600 2.5e-33 146.0 99 69.7
Solyc03g043850.3 Solanum lycopersicum HOM05D004858 ORTHO05D005600 3.2e-33 145.6 100 67.0
Rhsim08G0089100 Rhododendron simsii HOM05D004858 ORTHO05D005600 5.5e-33 144.8 99 67.7
HanXRQChr09g0263081 Helianthus annuus HOM05D004858 ORTHO05D005600 1.2e-32 143.7 102 70.6
SGA_v2.0_scaffold121G33088 Striga asiatica HOM05D004858 ORTHO05D005600 1.2e-32 143.7 104 66.3
TAR381G0631 Trochodendron aralioides HOM05D004858 ORTHO05D005600 2.1e-32 142.9 98 67.3
Aqoxy6G01531 Aquilegia oxysepala HOM05D004858 ORTHO05D005600 4.6e-32 141.7 102 64.7
PSO675G0895 Papaver somniferum HOM05D004858 ORTHO05D005600 1.0e-31 140.6 99 65.7
Sabra07G0006800 Salix brachista HOM05D004858 ORTHO05D005600 1.0e-31 140.6 88 73.9
Dinv26980 Davidia involucrata HOM05D004858 ORTHO05D005600 1.4e-31 140.2 87 75.9
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 1.8e-31 139.8 89 75.3
C01p01370 Brassica napus HOM05D004858 ORTHO05D005600 2.3e-31 139.4 99 63.6
Hma1.2p1_1953F.1_g308860 Hydrangea macrophylla HOM05D004858 ORTHO05D005600 3.9e-31 138.7 104 68.3
Os03g0772800 Oryza sativa ssp. japonica HOM05D004858 ORTHO05D005600 3.9e-31 138.7 100 63.0
BolC1t00134H Brassica oleracea HOM05D004858 ORTHO05D005600 8.8e-31 137.5 99 62.6
ECA232G2479 Erigeron canadensis HOM05D004858 ORTHO05D005600 8.8e-31 137.5 103 62.1
SalBow3G1594 Salvia bowleyana HOM05D004858 ORTHO05D005600 1.5e-30 136.7 98 65.3
SalBow3G4557 Salvia bowleyana HOM05D004858 ORTHO05D005600 1.5e-30 136.7 98 65.3
MD15G1304000 Malus domestica HOM05D004858 ORTHO05D005600 2.0e-30 136.3 98 67.3
EL10Ac6g14949 Beta vulgaris HOM05D004858 ORTHO05D005600 3.3e-30 135.6 102 61.8
Cc07_g07610 Coffea canephora HOM05D004858 ORTHO05D005600 3.3e-30 135.6 103 66.0
Aa31LG6G14730 Aethionema arabicum HOM05D004858 ORTHO05D005600 2.2e-29 132.9 127 53.5
HanXRQChr14g0447621 Helianthus annuus HOM05D004858 ORTHO05D005600 3.7e-29 132.1 102 63.7
ATR0767G115 Amborella trichopoda HOM05D004858 ORTHO05D005600 4.8e-29 131.7 88 68.2
HanXRQChr07g0203771 Helianthus annuus HOM05D004858 ORTHO05D005600 4.8e-29 131.7 102 61.8
Lsat_1_v5_gn_2_81581 Lactuca sativa HOM05D004858 ORTHO05D005600 4.8e-29 131.7 102 63.7
Psat4g088320 Pisum sativum HOM05D004858 ORTHO05D005600 4.8e-29 131.7 90 68.9
CiPaw.10G150100 Carya illinoinensis HOM05D004858 ORTHO05D005600 1.4e-28 130.2 73 74.0
Oeu061526.2 Olea europaea HOM05D004858 ORTHO05D005600 1.4e-28 130.2 91 68.1
Nitab4.5_0026287g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.8e-28 129.8 89 68.5
Peaxi162Scf00096g01525 Petunia axillaris HOM05D004858 ORTHO05D005600 1.8e-28 129.8 103 64.1
DCAR_025838 Daucus carota HOM05D004858 ORTHO05D005600 2.4e-28 129.4 89 67.4
HPP92_024955 Vanilla planifolia HOM05D004858 ORTHO05D005600 2.4e-28 129.4 105 58.1
Migut.L00438 Erythranthe guttata HOM05D004858 ORTHO05D005600 3.1e-28 129.0 104 61.5
AUR62007965 Chenopodium quinoa HOM05D004858 ORTHO05D005600 9.1e-28 127.5 104 61.5
PGSC0003DMG400017913 Solanum tuberosum HOM05D004858 ORTHO05D005600 1.2e-27 127.1 82 67.1
unitig_46.g18678 Utricularia gibba HOM05D004858 ORTHO05D005600 1.5e-27 126.7 103 63.1
ECA238G2402 Erigeron canadensis HOM05D004858 ORTHO05D005600 2.0e-27 126.3 102 62.7
DCAR_021459 Daucus carota HOM05D004858 ORTHO05D005600 3.4e-27 125.6 100 62.0
Oeu014311.1 Olea europaea HOM05D004858 ORTHO05D005600 4.5e-27 125.2 91 64.8
Solyc02g091880.4 Solanum lycopersicum HOM05D004858 ORTHO05D005600 4.5e-27 125.2 102 60.8
Sopen02g036450 Solanum pennellii HOM05D004858 ORTHO05D005600 4.5e-27 125.2 102 60.8
unitig_37.g12385 Utricularia gibba HOM05D004858 ORTHO05D005600 4.5e-27 125.2 100 61.0
CAN.G1061.6 Capsicum annuum HOM05D004858 ORTHO05D005600 1.3e-26 123.6 102 60.8
PGSC0003DMG400030258 Solanum tuberosum HOM05D004858 ORTHO05D005600 6.5e-26 121.3 91 64.8
Zm00001eb058950 Zea mays HOM05D004858 ORTHO05D005600 8.5e-26 120.9 89 62.9
Lsat_1_v5_gn_4_159121 Lactuca sativa HOM05D004858 ORTHO05D005600 1.9e-25 119.8 102 61.8
HPP92_021258 Vanilla planifolia HOM05D000682 ORTHO05D000510 3.2e-25 119.0 73 69.9
CSS0011371 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 6.1e-24 114.8 90 65.6
AUR62003145 Chenopodium quinoa HOM05D004858 ORTHO05D005600 1.4e-23 113.6 92 60.9
MELO3C014946.2 Cucumis melo HOM05D004858 ORTHO05D005600 8.8e-23 110.9 74 73.0
BraA01t00120Z Brassica rapa HOM05D004858 ORTHO05D005600 4.1e-20 102.1 102 52.9
BraA08t34250Z Brassica rapa HOM05D004858 ORTHO05D005600 9.1e-20 100.9 74 67.6
Nitab4.5_0007790g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 2.0e-19 99.8 91 56.0
Mapoly0043s0104 Marchantia polymorpha HOM05D004858 ORTHO05D005600 2.6e-19 99.4 79 59.5
C03p79020 Brassica napus HOM05D004858 ORTHO05D005600 4.5e-19 98.6 67 70.1
vmacro18001 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 6.5e-18 94.7 50 76.0
CSS0003752 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 1.1e-17 94.0 74 66.2
Nitab4.5_0002639g0030 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.9e-17 93.2 75 62.7
Hund16598 Selenicereus undatus HOM05D004858 ORTHO05D005600 1.9e-17 93.2 77 63.6
Sc03g0000690 Simmondsia chinensis HOM05D004858 ORTHO05D005600 1.4e-15 87.0 76 57.9
Ah.03g139600 Amaranthus hybridus HOM05D004858 ORTHO05D005600 5.2e-15 85.1 77 55.8
AagrBONN_evm.TU.Sc2ySwM_344.1653 Anthoceros agrestis HOM05D004858 ORTHO05D005600 8.8e-15 84.3 85 48.2
Pp3c5_3360 Physcomitrium patens HOM05D004858 ORTHO05D005600 8.8e-15 84.3 104 41.3
PGSC0003DMG400030628 Solanum tuberosum HOM05D004858 ORTHO05D005600 9.7e-14 80.9 110 42.7
Nitab4.5_0000396g0060 Nicotiana tabacum HOM05D004858 ORTHO05D005600 4.5e-11 72.0 76 52.6
A01p01210 Brassica napus HOM05D004858 ORTHO05D005600 1.3e-10 70.5 59 57.6
CBR_g50891 Chara braunii HOM05D004858 ORTHO05D005600 3.8e-10 68.9 104 40.4
Pp3c13_15160 Physcomitrium patens HOM05D004858 ORTHO05D005600 6.5e-10 68.2 73 45.2
SEGI_12659 Sequoiadendron giganteum HOM05D004858 ORTHO05D005600 2.5e-09 66.2 77 42.9
Pp3c6_25050 Physcomitrium patens HOM05D004858 ORTHO05D005600 3.2e-09 65.9 72 45.8
vmacro22430 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 4.2e-09 65.5 35 74.3
SHI12046 Sapria himalayana HOM05D004858 ORTHO05D005600 2.7e-08 62.8 35 74.3
arahy.Tifrunner.gnm1.ann1.0N5P6D Arachis hypogaea HOM05D004858 ORTHO05D005600 3.6e-08 62.4 49 61.2
arahy.Tifrunner.gnm1.ann1.HTA6FY Arachis hypogaea HOM05D004858 ORTHO05D005600 3.6e-08 62.4 49 61.2
PRCOL_00006369 Prasinoderma coloniale HOM05D004858 ORTHO05D005600 1.5e-06 57.0 85 36.5


User provided reference genes

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