Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI74G1439 Tripterygium wilfordii HOM05D005709 ORTHO05D006306 0.0e+00 1260.4 651 100.0
Manes.12G125900 Manihot esculenta HOM05D005709 ORTHO05D006306 5.6e-257 891.0 655 71.1
Potri.006G134400 Populus trichocarpa HOM05D005709 ORTHO05D006306 1.3e-256 889.8 647 71.6
Sabra06G0105500 Salix brachista HOM05D005709 ORTHO05D006306 3.9e-250 868.2 663 69.2
MD03G1143200 Malus domestica HOM05D005709 ORTHO05D006306 6.7e-250 867.5 642 70.2
RcHm_v2.0_Chr2g0111161 Rosa chinensis HOM05D005709 ORTHO05D006306 5.7e-249 864.4 665 68.3
MD11G1164000 Malus domestica HOM05D005709 ORTHO05D006306 1.6e-248 862.8 642 69.5
Prupe.6G202100 Prunus persica HOM05D005709 ORTHO05D006306 1.6e-248 862.8 651 68.5
Ciclev10025155m.g Citrus clementina HOM05D005709 ORTHO05D006306 1.1e-247 860.1 637 70.0
Cpa.g.sc55.19 Carica papaya HOM05D005709 ORTHO05D006306 1.8e-247 859.4 659 68.7
QL06p035832 Quercus lobata HOM05D005709 ORTHO05D006306 1.0e-245 853.6 652 69.5
FAN28G2327 Fragaria x ananassa HOM05D005709 ORTHO05D006306 1.2e-243 846.7 647 67.9
Cfa006877 Carpinus fangiana HOM05D005709 ORTHO05D006306 4.3e-241 838.2 656 67.1
CiPaw.07G047300 Carya illinoinensis HOM05D005709 ORTHO05D006306 4.3e-241 838.2 647 67.9
Haze_03880 Corylus avellana HOM05D005709 ORTHO05D006306 4.8e-240 834.7 656 67.1
FvH4_1g19610 Fragaria vesca HOM05D005709 ORTHO05D006306 1.7e-237 826.2 656 66.9
FAN26G3468 Fragaria x ananassa HOM05D005709 ORTHO05D006306 1.4e-236 823.2 656 67.2
Actinidia28821 Actinidia chinensis HOM05D005709 ORTHO05D006306 2.5e-236 822.4 674 66.5
Atru.chr3.1240 Acer truncatum HOM05D005709 ORTHO05D006306 2.1e-235 819.3 631 67.8
Eucgr.H04723 Eucalyptus grandis HOM05D005709 ORTHO05D006306 5.7e-233 811.2 647 67.7
CSS0001510 Camellia sinensis var. sinensis HOM05D005709 ORTHO05D006306 7.4e-233 810.8 673 65.8
CANSAT01G1032 Cannabis sativa HOM05D005709 ORTHO05D006306 1.7e-232 809.7 660 66.2
ClCG10G007760 Citrullus lanatus HOM05D005709 ORTHO05D006306 2.6e-230 802.4 660 63.8
Thecc.01G090000 Theobroma cacao HOM05D005709 ORTHO05D006306 6.5e-229 797.7 651 63.9
TAR625G0141 Trochodendron aralioides HOM05D005709 ORTHO05D006306 8.5e-229 797.3 655 65.6
MELO3C016416.2 Cucumis melo HOM05D005709 ORTHO05D006306 9.4e-228 793.9 668 62.6
FAN19G1851 Fragaria x ananassa HOM05D005709 ORTHO05D006306 2.1e-227 792.7 625 67.2
Duzib187G1076 Durio zibethinus HOM05D005709 ORTHO05D006306 1.1e-225 786.9 644 63.4
Thhalv10003796m.g Eutrema salsugineum HOM05D005709 ORTHO05D006306 2.2e-224 782.7 652 62.4
Sopen11g005470 Solanum pennellii HOM05D005709 ORTHO05D006306 9.1e-223 777.3 658 64.3
Ah.02g123530 Amaranthus hybridus HOM05D005709 ORTHO05D006306 2.0e-222 776.2 639 64.0
Nn3g18597 Nelumbo nucifera HOM05D005709 ORTHO05D006306 2.0e-222 776.2 669 62.6
EL10Ac6g15201 Beta vulgaris HOM05D005709 ORTHO05D006306 2.9e-221 772.3 648 63.3
PGR102G2444 Punica granatum HOM05D005709 ORTHO05D006306 5.0e-221 771.5 648 63.3
vmacro18555 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 5.0e-221 771.5 666 62.6
PGSC0003DMG400016130 Solanum tuberosum HOM05D005709 ORTHO05D006306 8.5e-221 770.8 654 64.4
CsaV3_3G006890 Cucumis sativus L. HOM05D005709 ORTHO05D006306 5.5e-220 768.1 660 62.0
Solyc11g010660.2 Solanum lycopersicum HOM05D005709 ORTHO05D006306 2.1e-219 766.1 660 63.6
Hund16527 Selenicereus undatus HOM05D005709 ORTHO05D006306 1.8e-218 763.1 646 63.9
BolC3t18312H Brassica oleracea HOM05D005709 ORTHO05D006306 3.0e-218 762.3 651 62.4
Medtr5g032050 Medicago truncatula HOM05D005709 ORTHO05D006306 4.0e-218 761.9 637 62.6
Sp2g28570 Schrenkiella parvula HOM05D005709 ORTHO05D006306 1.5e-217 760.0 645 60.9
arahy.Tifrunner.gnm1.ann1.7T2SE7 Arachis hypogaea HOM05D005709 ORTHO05D006306 7.5e-217 757.7 656 61.3
arahy.Tifrunner.gnm1.ann1.IH5V0S Arachis hypogaea HOM05D005709 ORTHO05D006306 7.5e-217 757.7 656 61.3
Glyma.09G199500 Glycine max HOM05D005709 ORTHO05D006306 1.3e-216 756.9 654 61.2
Ca_22702_v3 Cicer arietinum L. HOM05D005709 ORTHO05D006306 1.7e-216 756.5 641 61.9
Carub.0008s2634 Capsella rubella HOM05D005709 ORTHO05D006306 3.7e-216 755.4 644 60.9
Aqoxy5G01380 Aquilegia oxysepala HOM05D005709 ORTHO05D006306 4.8e-216 755.0 651 63.0
Lalb_Chr09g0325971 Lupinus albus HOM05D005709 ORTHO05D006306 4.8e-216 755.0 647 62.3
VMungo1215G1966 Vigna mungo HOM05D005709 ORTHO05D006306 2.4e-215 752.7 645 61.2
ECA238G0695 Erigeron canadensis HOM05D005709 ORTHO05D006306 7.0e-215 751.1 655 59.8
AL8G43070 Arabidopsis lyrata HOM05D005709 ORTHO05D006306 1.2e-214 750.4 648 61.4
Rhsim08G0016800 Rhododendron simsii HOM05D005709 ORTHO05D006306 1.0e-213 747.3 665 61.8
Lj2g0012290 Lotus japonicus HOM05D005709 ORTHO05D006306 2.2e-213 746.1 648 61.1
Sed0005807 Sechium edule HOM05D005709 ORTHO05D006306 6.5e-213 744.6 646 60.7
CARHR279470 Cardamine hirsuta HOM05D005709 ORTHO05D006306 1.1e-212 743.8 645 60.8
Nitab4.5_0013799g0010 Nicotiana tabacum HOM05D005709 ORTHO05D006306 1.1e-212 743.8 654 62.5
COL.COLO4_27357 Corchorus olitorius HOM05D005709 ORTHO05D006306 2.5e-212 742.7 663 60.3
HanXRQChr14g0442981 Helianthus annuus HOM05D005709 ORTHO05D006306 4.2e-212 741.9 653 59.6
SGA_v2.0_scaffold115G32123 Striga asiatica HOM05D005709 ORTHO05D006306 1.2e-211 740.3 671 60.2
AT5G65490 Arabidopsis thaliana HOM05D005709 ORTHO05D006306 2.1e-211 739.6 639 61.3
BraA06t26158Z Brassica rapa HOM05D005709 ORTHO05D006306 3.6e-211 738.8 651 61.4
Lju188A3T31 Lonicera japonica HOM05D005709 ORTHO05D006306 6.1e-211 738.0 655 62.0
A06p32320 Brassica napus HOM05D005709 ORTHO05D006306 5.2e-210 734.9 651 59.9
Gorai.003G037400 Gossypium raimondii HOM05D005709 ORTHO05D006306 5.2e-210 734.9 657 59.8
Gohir.A02G144800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 2.8e-208 729.2 642 60.3
C03p60550 Brassica napus HOM05D005709 ORTHO05D006306 3.7e-208 728.8 648 59.1
PSO170G3043 Papaver somniferum HOM05D005709 ORTHO05D006306 3.7e-208 728.8 651 60.4
Aa31LG1G16510 Aethionema arabicum HOM05D005709 ORTHO05D006306 2.4e-207 726.1 648 58.8
Gohir.D03G035800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 4.1e-207 725.3 642 60.1
Cc07_g14050 Coffea canephora HOM05D005709 ORTHO05D006306 2.0e-206 723.0 658 58.5
Nitab4.5_0007624g0020 Nicotiana tabacum HOM05D005709 ORTHO05D006306 4.5e-206 721.8 697 58.2
Peaxi162Scf00474g00732 Petunia axillaris HOM05D005709 ORTHO05D006306 6.1e-203 711.4 659 59.8
MBI16_g12470_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 1.0e-202 710.7 682 57.9
DCAR_010090 Daucus carota HOM05D005709 ORTHO05D006306 1.4e-202 710.3 646 59.8
Migut.K00802 Erythranthe guttata HOM05D005709 ORTHO05D006306 1.4e-202 710.3 649 58.7
Psat2g082080 Pisum sativum HOM05D005709 ORTHO05D006306 2.6e-201 706.1 637 58.6
AUR62003667 Chenopodium quinoa HOM05D005709 ORTHO05D006306 4.1e-199 698.7 613 61.7
SHI21884 Sapria himalayana HOM05D005709 ORTHO05D006306 3.5e-198 695.7 646 57.0
PSO017G1508 Papaver somniferum HOM05D005709 ORTHO05D006306 3.5e-190 669.1 656 56.6
GSVIVG01007131001 Vitis vinifera HOM05D005709 ORTHO05D006306 1.0e-189 667.5 493 68.6
Glyma.01G022800 Glycine max HOM05D005709 ORTHO05D006306 2.3e-186 656.4 529 64.1
vmacro21792 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 2.3e-186 656.4 594 60.4
unitig_32.g11802 Utricularia gibba HOM05D005709 ORTHO05D006306 5.2e-186 655.2 674 55.8
vmacro18553 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 5.8e-185 651.7 568 62.3
Phvul.002G146800 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 1.3e-184 650.6 534 62.0
AUR62017977 Chenopodium quinoa HOM05D005709 ORTHO05D006306 3.0e-181 639.4 651 56.1
ATR0763G252 Amborella trichopoda HOM05D005709 ORTHO05D006306 7.8e-174 614.8 685 52.1
Os08g0447200 Oryza sativa ssp. japonica HOM05D005709 ORTHO05D006306 5.1e-173 612.1 670 52.5
Sc03g0000380 Simmondsia chinensis HOM05D005709 ORTHO05D006306 3.8e-168 595.9 503 62.0
CAN.G1344.19 Capsicum annuum HOM05D005709 ORTHO05D006306 5.4e-167 592.0 529 62.2
Zm00001eb040880 Zea mays HOM05D005709 ORTHO05D006306 2.7e-166 589.7 645 51.3
Lsat_1_v5_gn_2_70300 Lactuca sativa HOM05D005709 ORTHO05D006306 1.7e-165 587.0 505 61.0
SEGI_11890 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 1.8e-162 577.0 696 48.1
THA.LOC104809180 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 2.4e-162 576.6 486 64.6
HPP92_015350 Vanilla planifolia HOM05D005709 ORTHO05D006306 2.5e-156 556.6 542 55.4
vmacro21794 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 4.6e-150 535.8 606 51.7
SMO137G0394 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 7.6e-137 491.9 645 44.8
PSO675G1794 Papaver somniferum HOM05D005709 ORTHO05D006306 1.1e-132 478.0 437 61.6
Mapoly0135s0033 Marchantia polymorpha HOM05D005709 ORTHO05D006306 3.0e-117 426.8 746 37.5
Medtr4g125890 Medicago truncatula HOM05D005709 ORTHO05D006306 3.9e-117 426.4 521 48.9
Pp3c1_9650 Physcomitrium patens HOM05D005709 ORTHO05D006306 6.1e-110 402.5 694 38.8
SMO137G0085 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 1.2e-100 371.7 582 41.2
TAR381G1594 Trochodendron aralioides HOM05D005709 ORTHO05D006306 4.4e-100 369.8 387 57.6
TPR.G36816 Trifolium pratense HOM05D005709 ORTHO05D006306 9.7e-100 368.6 276 64.5
Dinv13597 Davidia involucrata HOM05D005709 ORTHO05D006306 1.7e-99 367.9 290 68.6
Dinv13596 Davidia involucrata HOM05D005709 ORTHO05D006306 4.2e-95 353.2 340 59.1
MBI16_g19593_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 7.5e-92 342.4 336 58.3
Oeu002141.1 Olea europaea HOM05D005709 ORTHO05D006306 8.6e-88 328.9 289 64.0
AagrBONN_evm.TU.Sc2ySwM_368.1496 Anthoceros agrestis HOM05D005709 ORTHO05D006306 2.6e-84 317.4 652 35.4
CBR_g78875 Chara braunii HOM05D005709 ORTHO05D006306 1.5e-76 291.6 489 38.2
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.9e-74 284.6 429 45.9
TPR.G36731 Trifolium pratense HOM05D005709 ORTHO05D006306 9.2e-74 282.3 290 57.6
HPP92_015330 Vanilla planifolia HOM05D005709 ORTHO05D006306 1.9e-71 274.6 331 47.1
BcaC01g02778 Brassica carinata HOM05D005709 ORTHO05D006306 6.4e-67 259.6 175 73.1
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 7.8e-65 252.7 205 66.8
PSO210G2291 Papaver somniferum HOM05D005709 ORTHO05D006306 1.7e-64 251.5 385 42.3
Sed0017677 Sechium edule HOM05D005709 ORTHO05D006306 2.3e-61 241.1 378 43.4
TAR381G1451 Trochodendron aralioides HOM05D005709 ORTHO05D006306 1.1e-55 222.2 149 73.8
THA.LOC104821549 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 1.7e-51 208.4 156 65.4
Oeu031122.1 Olea europaea HOM05D005709 ORTHO05D006306 2.4e-50 204.5 197 54.3
Cre03.g145707 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 5.6e-39 166.8 239 40.2
BcaC01g02779 Brassica carinata HOM05D005709 ORTHO05D006306 3.1e-37 161.0 117 62.4
BcaC01g02777 Brassica carinata HOM05D005709 ORTHO05D006306 6.9e-29 133.3 174 45.4
PRCOL_00002122 Prasinoderma coloniale HOM05D005709 ORTHO05D006306 8.4e-27 126.3 715 26.0
SEGI_13404 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 1.3e-19 102.4 127 51.2
SMO207G0001 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 2.5e-15 88.2 92 51.1
Phvul.008G217000 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 5.7e-15 87.0 61 75.4
BolC2t12478H Brassica oleracea HOM05D005709 ORTHO05D006306 1.3e-14 85.9 110 45.5
SMO162G0006 Selaginella moellendorffii HOM05D000981 ORTHO05D006306 4.8e-14 84.0 155 40.0
TPR.G34440 Trifolium pratense HOM05D005709 ORTHO05D006306 1.1e-13 82.8 63 61.9
HPP92_015331 Vanilla planifolia HOM05D005709 ORTHO05D006306 1.2e-12 79.3 55 67.3
SalBow5G5475 Salvia bowleyana HOM05D036480 ORTHO05D006306 1.5e-12 79.0 99 45.5
C02p64140 Brassica napus HOM05D005709 ORTHO05D006306 3.4e-12 77.8 110 44.5
CARHR215690 Cardamine hirsuta HOM05D005709 ORTHO05D006306 4.5e-12 77.4 55 65.5
TPR.G25795 Trifolium pratense HOM05D005709 ORTHO05D006306 4.5e-12 77.4 63 58.7
Cre03.g145667 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 5.7e-07 60.5 105 34.3


User provided reference genes

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