Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI74G1424 Tripterygium wilfordii HOM05D002172 ORTHO05D010376 2.8e-147 525.4 288 100.0
Cfa011740 Carpinus fangiana HOM05D028161 ORTHO05D010376 4.0e-21 106.3 290 32.1
Haze_24379 Corylus avellana HOM05D028161 ORTHO05D010376 6.8e-21 105.5 283 32.2
Potri.009G075000 Populus trichocarpa HOM05D020455 ORTHO05D010376 4.1e-18 96.3 117 43.6
Sabra09G0056900 Salix brachista HOM05D011591 ORTHO05D010376 2.0e-17 94.0 117 43.6
Thecc.09G353600 Theobroma cacao HOM05D020455 ORTHO05D010376 2.0e-17 94.0 157 39.5
Manes.18G136300 Manihot esculenta HOM05D011591 ORTHO05D010376 7.8e-17 92.0 179 35.2
MELO3C020524.2 Cucumis melo HOM05D039867 ORTHO05D010376 7.3e-15 85.5 192 33.3
Sed0000970 Sechium edule HOM05D011591 ORTHO05D010376 4.0e-13 79.7 144 37.5
Rhsim13G0066500 Rhododendron simsii HOM05D010709 ORTHO05D010376 5.8e-12 75.9 135 37.8
SHI19189 Sapria himalayana HOM05D011591 ORTHO05D010376 7.5e-12 75.5 122 38.5
FAN21G0777 Fragaria x ananassa HOM05D002172 ORTHO05D010376 1.3e-11 74.7 184 31.5
FvH4_3g39200 Fragaria vesca HOM05D040535 ORTHO05D010376 1.7e-11 74.3 167 34.1
FAN11G1101 Fragaria x ananassa HOM05D008445 ORTHO05D010376 1.7e-11 74.3 167 34.1
Hma1.2p1_1974F.1_g309630 Hydrangea macrophylla HOM05D010709 ORTHO05D010376 2.2e-11 73.9 252 28.6
QL01p039514 Quercus lobata HOM05D011591 ORTHO05D010376 2.2e-11 73.9 242 28.1
Mapoly0019s0040 Marchantia polymorpha HOM05D001917 ORTHO05D002167 3.7e-11 73.2 153 34.0
PGSC0003DMG401007810 Solanum tuberosum HOM05D002172 ORTHO05D002167 1.1e-10 71.6 147 34.0
Gohir.A05G107850 Gossypium hirsutum HOM05D020455 ORTHO05D010376 1.4e-10 71.2 114 35.1
EL10Ac9g20854 Beta vulgaris HOM05D002172 ORTHO05D002167 3.2e-10 70.1 171 31.0
Gohir.D05G108050 Gossypium hirsutum HOM05D020455 ORTHO05D010376 3.2e-10 70.1 132 35.6
CAN.G318.5 Capsicum annuum HOM05D002172 ORTHO05D002167 5.4e-10 69.3 101 40.6
Ca_14980_v3 Cicer arietinum L. HOM05D016525 ORTHO05D010376 5.4e-10 69.3 126 38.1
Gorai.009G112200 Gossypium raimondii HOM05D020455 ORTHO05D010376 5.4e-10 69.3 174 32.2
BcaC02g12484 Brassica carinata HOM05D002172 ORTHO05D002167 9.2e-10 68.6 118 37.3
C04p03550 Brassica napus HOM05D002172 ORTHO05D002167 9.2e-10 68.6 118 37.3
CSS0009595 Camellia sinensis var. sinensis HOM05D002172 ORTHO05D002167 9.2e-10 68.6 110 37.3
Solyc12g010800.2 Solanum lycopersicum HOM05D002172 ORTHO05D002167 1.2e-09 68.2 147 33.3
Sopen12g006170 Solanum pennellii HOM05D002172 ORTHO05D002167 1.2e-09 68.2 147 33.3
Actinidia32624 Actinidia chinensis HOM05D010709 ORTHO05D010376 1.6e-09 67.8 216 29.2
arahy.Tifrunner.gnm1.ann1.NC1Z37 Arachis hypogaea HOM05D000516 ORTHO05D010376 2.1e-09 67.4 102 39.2
BcaC07g40326 Brassica carinata HOM05D002172 ORTHO05D002167 2.1e-09 67.4 107 39.3
ECA240G3701 Erigeron canadensis HOM05D002172 ORTHO05D002167 2.1e-09 67.4 101 40.6
Pp3c5_20330 Physcomitrium patens HOM05D002172 ORTHO05D002167 2.1e-09 67.4 115 38.3
THA.LOC104810699 Tarenaya hassleriana HOM05D011591 ORTHO05D010376 2.1e-09 67.4 194 27.8
CDE02G3937 Ceratophyllum demersum HOM05D002172 ORTHO05D002167 2.7e-09 67.0 168 32.7
arahy.Tifrunner.gnm1.ann1.EA8GWL Arachis hypogaea HOM05D020455 ORTHO05D010376 3.5e-09 66.6 102 39.2
C08p33640 Brassica napus HOM05D002172 ORTHO05D002167 3.5e-09 66.6 107 39.3
BolC8t50961H Brassica oleracea HOM05D002172 ORTHO05D002167 3.5e-09 66.6 107 39.3
CSS0041982 Camellia sinensis var. sinensis HOM05D010709 ORTHO05D010376 3.5e-09 66.6 105 38.1
A05p02920 Brassica napus HOM05D002172 ORTHO05D002167 4.6e-09 66.2 118 37.3
HPP92_020291 Vanilla planifolia HOM05D002172 ORTHO05D002167 4.6e-09 66.2 110 38.2
CDE03G0342 Ceratophyllum demersum HOM05D002172 ORTHO05D002167 6.0e-09 65.9 100 39.0
Dinv14958 Davidia involucrata HOM05D002172 ORTHO05D002167 6.0e-09 65.9 100 40.0
Lj3g0018486 Lotus japonicus HOM05D002172 ORTHO05D002167 6.0e-09 65.9 106 39.6
Pp3c2_26970 Physcomitrium patens HOM05D002172 ORTHO05D002167 6.0e-09 65.9 126 37.3
Peaxi162Scf00384g00069 Petunia axillaris HOM05D002172 ORTHO05D002167 7.8e-09 65.5 99 39.4
SGA_v2.0_scaffold54G19473 Striga asiatica HOM05D010709 ORTHO05D010376 7.8e-09 65.5 113 36.3
HanXRQChr13g0391241 Helianthus annuus HOM05D002172 ORTHO05D002167 1.0e-08 65.1 105 38.1
TWI14G1374 Tripterygium wilfordii HOM05D002172 ORTHO05D002167 1.3e-08 64.7 107 36.4
HPP92_005197 Vanilla planifolia HOM05D002172 ORTHO05D002167 1.3e-08 64.7 99 39.4
Ah.01g003880 Amaranthus hybridus HOM05D002172 ORTHO05D002167 1.7e-08 64.3 108 37.0
Dinv19980 Davidia involucrata HOM05D002172 ORTHO05D002167 1.7e-08 64.3 100 37.0
CDE04G2153 Ceratophyllum demersum HOM05D002172 ORTHO05D002167 2.3e-08 63.9 135 31.1
Pp3c6_7520 Physcomitrium patens HOM05D002172 ORTHO05D002167 2.3e-08 63.9 115 36.5
Sc12g0003320 Simmondsia chinensis HOM05D002172 ORTHO05D002167 2.3e-08 63.9 217 26.3
Hma1.2p1_0416F.1_g148590 Hydrangea macrophylla HOM05D002172 ORTHO05D002167 3.0e-08 63.5 132 33.3
Manes.03G103800 Manihot esculenta HOM05D002172 ORTHO05D002167 3.0e-08 63.5 163 28.8
Os01g0756200 Oryza sativa ssp. japonica HOM05D002172 ORTHO05D002167 3.0e-08 63.5 103 39.8
AUR62038993 Chenopodium quinoa HOM05D002172 ORTHO05D002167 3.9e-08 63.2 179 29.1
MBI15_g40755_MAGBIO Magnolia biondii HOM05D002172 ORTHO05D002167 3.9e-08 63.2 157 29.3
Manes.13G139500 Manihot esculenta HOM05D002172 ORTHO05D002167 5.1e-08 62.8 107 37.4
Pp3c1_7300 Physcomitrium patens HOM05D000516 ORTHO05D002167 5.1e-08 62.8 219 29.2
Pp3c8_11470 Physcomitrium patens HOM05D002172 ORTHO05D002167 5.1e-08 62.8 199 29.1
PGR142G3291 Punica granatum HOM05D002172 ORTHO05D002167 5.1e-08 62.8 99 38.4
TWI23G0692 Tripterygium wilfordii HOM05D002172 ORTHO05D002167 5.1e-08 62.8 99 38.4
HanXRQChr09g0261991 Helianthus annuus HOM05D000516 ORTHO05D000409 6.6e-08 62.4 169 31.4
Zm00001eb152810 Zea mays HOM05D002172 ORTHO05D002167 6.6e-08 62.4 99 38.4
arahy.Tifrunner.gnm1.ann1.1B2Z8C Arachis hypogaea HOM05D000516 ORTHO05D000409 8.6e-08 62.0 182 31.9
arahy.Tifrunner.gnm1.ann1.K23Z11 Arachis hypogaea HOM05D000516 ORTHO05D000409 8.6e-08 62.0 182 31.9
vmacro11903 Vaccinium macrocarpon HOM05D002172 ORTHO05D002167 8.6e-08 62.0 100 39.0
HanXRQChr03g0071001 Helianthus annuus HOM05D002172 ORTHO05D002167 1.1e-07 61.6 110 35.5
Medtr3g465350 Medicago truncatula HOM05D016525 ORTHO05D010376 1.1e-07 61.6 123 34.1
MSTRG.22326 Avicennia marina HOM05D000516 ORTHO05D000409 1.9e-07 60.8 93 41.9
Rhsim01G0239200 Rhododendron simsii HOM05D010709 ORTHO05D010376 1.9e-07 60.8 115 33.9
Zm00001eb238570 Zea mays HOM05D002172 ORTHO05D002167 1.9e-07 60.8 96 38.5
Zm00001eb370720 Zea mays HOM05D002172 ORTHO05D002167 1.9e-07 60.8 99 38.4
CSS0033974 Camellia sinensis var. sinensis HOM05D010709 ORTHO05D010376 2.5e-07 60.5 90 43.3
MD17G1233900 Malus domestica HOM05D002172 ORTHO05D002167 2.5e-07 60.5 163 28.8
unitig_37.g12563 Utricularia gibba HOM05D002172 ORTHO05D002167 2.5e-07 60.5 117 34.2
Lalb_Chr03g0030941 Lupinus albus HOM05D002172 ORTHO05D002167 3.3e-07 60.1 98 37.8
Rhsim06G0135000 Rhododendron simsii HOM05D002172 ORTHO05D002167 4.3e-07 59.7 102 36.3
Ah.04g164430 Amaranthus hybridus HOM05D002172 ORTHO05D007185 5.6e-07 59.3 82 42.7
Os01g0211800 Oryza sativa ssp. japonica HOM05D002172 ORTHO05D002167 5.6e-07 59.3 80 43.8
Pp3c18_14260 Physcomitrium patens HOM05D000516 ORTHO05D000409 5.6e-07 59.3 225 30.2
vmacro12360 Vaccinium macrocarpon HOM05D002172 ORTHO05D002167 5.6e-07 59.3 109 35.8
CDE08G1281 Ceratophyllum demersum HOM05D000516 ORTHO05D000409 7.3e-07 58.9 111 36.0
SMO367G0542 Selaginella moellendorffii HOM05D002172 ORTHO05D002167 7.3e-07 58.9 132 34.8
TAR624G0475 Trochodendron aralioides HOM05D002172 ORTHO05D002167 7.3e-07 58.9 100 37.0
TAR624G0577 Trochodendron aralioides HOM05D002172 ORTHO05D002167 7.3e-07 58.9 100 37.0
Ca_04024_v3 Cicer arietinum L. HOM05D002172 ORTHO05D002167 9.5e-07 58.5 80 42.5
Lsat_1_v5_gn_9_99081 Lactuca sativa HOM05D002172 ORTHO05D002167 1.2e-06 58.2 100 37.0
Lj8A152T85 Lonicera japonica HOM05D002172 ORTHO05D002167 1.2e-06 58.2 82 41.5
Nn1g04300 Nelumbo nucifera HOM05D002172 ORTHO05D002167 1.2e-06 58.2 82 41.5
Pp3c24_10470 Physcomitrium patens HOM05D002172 ORTHO05D002167 1.2e-06 58.2 169 30.8
QL01p039458 Quercus lobata HOM05D010097 ORTHO05D011665 1.2e-06 58.2 88 42.0
Thhalv10016923m.g Eutrema salsugineum HOM05D002172 ORTHO05D002167 1.6e-06 57.8 106 36.8
Sabra19G0105300 Salix brachista HOM05D002172 ORTHO05D002167 1.6e-06 57.8 83 38.6
BolC3t19994H Brassica oleracea HOM05D000516 ORTHO05D000409 2.1e-06 57.4 211 29.9
AUR62026729 Chenopodium quinoa HOM05D000516 ORTHO05D000409 2.1e-06 57.4 121 34.7
Duzib170G0027 Durio zibethinus HOM05D002172 ORTHO05D002167 2.1e-06 57.4 55 50.9
ECA232G1008 Erigeron canadensis HOM05D000516 ORTHO05D000409 2.1e-06 57.4 165 32.1
Gorai.005G111000 Gossypium raimondii HOM05D000516 ORTHO05D000409 2.1e-06 57.4 117 35.0
Gorai.007G325700 Gossypium raimondii HOM05D002172 ORTHO05D002167 2.1e-06 57.4 83 41.0
Pp3c7_23340 Physcomitrium patens HOM05D000516 ORTHO05D002167 2.1e-06 57.4 169 29.0
Rhsim06G0204100 Rhododendron simsii HOM05D002172 ORTHO05D002167 2.1e-06 57.4 85 41.2
SEGI_18269 Sequoiadendron giganteum HOM05D002172 ORTHO05D002167 2.1e-06 57.4 139 34.5
ATR0661G486 Amborella trichopoda HOM05D001917 ORTHO05D002790 2.8e-06 57.0 109 38.5
Lj8A105T40 Lonicera japonica HOM05D002172 ORTHO05D002167 2.8e-06 57.0 168 30.4
SHI27683 Sapria himalayana HOM05D002172 ORTHO05D002167 2.8e-06 57.0 82 41.5
PGSC0003DMG400012436 Solanum tuberosum HOM05D002172 ORTHO05D002167 2.8e-06 57.0 71 45.1
HPP92_001546 Vanilla planifolia HOM05D000516 ORTHO05D000409 2.8e-06 57.0 128 35.2
C03p28180 Brassica napus HOM05D002172 ORTHO05D002167 3.6e-06 56.6 83 39.8
Migut.M00759 Erythranthe guttata HOM05D002172 ORTHO05D002167 3.6e-06 56.6 61 50.8
Manes.10G001100 Manihot esculenta HOM05D000516 ORTHO05D000409 3.6e-06 56.6 162 32.1
Nitab4.5_0000246g0100 Nicotiana tabacum HOM05D002172 ORTHO05D002167 3.6e-06 56.6 61 50.8
Nitab4.5_0000831g0030 Nicotiana tabacum HOM05D002172 ORTHO05D002167 3.6e-06 56.6 61 50.8
PSO541G5259 Papaver somniferum HOM05D002172 ORTHO05D002167 3.6e-06 56.6 69 46.4
PSO675G6960 Papaver somniferum HOM05D002172 ORTHO05D002167 3.6e-06 56.6 69 46.4
Prupe.3G125500 Prunus persica HOM05D002172 ORTHO05D002167 3.6e-06 56.6 112 33.9
Sabra05G0145700 Salix brachista HOM05D000516 ORTHO05D000409 3.6e-06 56.6 94 39.4
Solyc07g062710.4 Solanum lycopersicum HOM05D002172 ORTHO05D002167 3.6e-06 56.6 64 50.0
Sopen07g030940 Solanum pennellii HOM05D002172 ORTHO05D002167 3.6e-06 56.6 64 50.0
Actinidia10984 Actinidia chinensis HOM05D002172 ORTHO05D002167 4.7e-06 56.2 100 36.0
A03p23630 Brassica napus HOM05D002172 ORTHO05D002167 4.7e-06 56.2 83 38.6
BraA03t11579Z Brassica rapa HOM05D002172 ORTHO05D002167 4.7e-06 56.2 83 38.6
CDE09G0039 Ceratophyllum demersum HOM05D002172 ORTHO05D002167 4.7e-06 56.2 61 49.2
Duzib268G0924 Durio zibethinus HOM05D002172 ORTHO05D002167 4.7e-06 56.2 61 49.2
Gohir.A03G077700 Gossypium hirsutum HOM05D000516 ORTHO05D000409 4.7e-06 56.2 117 35.0
Gohir.D02G097400 Gossypium hirsutum HOM05D000516 ORTHO05D000409 4.7e-06 56.2 117 35.0
Peaxi162Scf00069g01927 Petunia axillaris HOM05D002172 ORTHO05D002167 4.7e-06 56.2 61 50.8
SGA_v2.0_scaffold73G24212 Striga asiatica HOM05D002172 ORTHO05D002167 4.7e-06 56.2 61 50.8
Aa31LG10G12830 Aethionema arabicum HOM05D002172 ORTHO05D002167 6.2e-06 55.8 89 38.2
Aqoxy1G02211 Aquilegia oxysepala HOM05D002172 ORTHO05D002167 6.2e-06 55.8 61 47.5
CiPaw.12G115600 Carya illinoinensis HOM05D002172 ORTHO05D002167 6.2e-06 55.8 61 49.2
CDE04G1435 Ceratophyllum demersum HOM05D065581 ORTHO05D002167 6.2e-06 55.8 117 31.6
MELO3C025623.2 Cucumis melo HOM05D002172 ORTHO05D002167 6.2e-06 55.8 62 46.8
CsaV3_4G033330 Cucumis sativus L. HOM05D002172 ORTHO05D002167 6.2e-06 55.8 62 46.8
DCAR_021009 Daucus carota HOM05D002172 ORTHO05D002167 6.2e-06 55.8 61 49.2
Gorai.009G285000 Gossypium raimondii HOM05D000516 ORTHO05D000409 6.2e-06 55.8 179 27.9
MBI07_g17037_MAGBIO Magnolia biondii HOM05D002172 ORTHO05D002167 6.2e-06 55.8 61 47.5
Psat5g240960 Pisum sativum HOM05D002172 ORTHO05D002167 6.2e-06 55.8 61 49.2
Psat5g275000 Pisum sativum HOM05D002172 ORTHO05D002167 6.2e-06 55.8 84 39.3
Prupe.1G369300 Prunus persica HOM05D000516 ORTHO05D000409 6.2e-06 55.8 175 33.7
TAR626G1972 Trochodendron aralioides HOM05D002172 ORTHO05D002167 6.2e-06 55.8 61 47.5
VMungo0464G0836 Vigna mungo HOM05D000516 ORTHO05D000409 6.2e-06 55.8 145 32.4
GSVIVG01020658001 Vitis vinifera HOM05D002172 ORTHO05D002167 6.2e-06 55.8 61 49.2
AT2G21230 Arabidopsis thaliana HOM05D000516 ORTHO05D000409 8.1e-06 55.5 100 40.0
arahy.Tifrunner.gnm1.ann1.HW01DK Arachis hypogaea HOM05D002172 ORTHO05D002167 8.1e-06 55.5 61 49.2
arahy.Tifrunner.gnm1.ann1.ZES6QF Arachis hypogaea HOM05D002172 ORTHO05D002167 8.1e-06 55.5 61 49.2
CiPaw.11G165200 Carya illinoinensis HOM05D002172 ORTHO05D002167 8.1e-06 55.5 61 49.2
Cc00_g21780 Coffea canephora HOM05D000516 ORTHO05D000409 8.1e-06 55.5 157 29.9
Duzib213G0791 Durio zibethinus HOM05D002172 ORTHO05D002167 8.1e-06 55.5 64 46.9
Glyma.12G227700 Glycine max HOM05D002172 ORTHO05D002167 8.1e-06 55.5 61 49.2
Gohir.A01G059300 Gossypium hirsutum HOM05D002172 ORTHO05D002167 8.1e-06 55.5 61 49.2
Gohir.A13G148000 Gossypium hirsutum HOM05D002172 ORTHO05D002167 8.1e-06 55.5 61 47.5
Gohir.D01G045300 Gossypium hirsutum HOM05D002172 ORTHO05D002167 8.1e-06 55.5 61 49.2
Gohir.D13G152600 Gossypium hirsutum HOM05D002172 ORTHO05D002167 8.1e-06 55.5 61 47.5
Gorai.002G064900 Gossypium raimondii HOM05D002172 ORTHO05D002167 8.1e-06 55.5 61 49.2
Gorai.013G172500 Gossypium raimondii HOM05D002172 ORTHO05D002167 8.1e-06 55.5 61 47.5
Lsat_1_v5_gn_9_59881 Lactuca sativa HOM05D000516 ORTHO05D000409 8.1e-06 55.5 167 30.5
Lj2g0016043 Lotus japonicus HOM05D000516 ORTHO05D000409 8.1e-06 55.5 158 33.5
Manes.05G151400 Manihot esculenta HOM05D000516 ORTHO05D000409 8.1e-06 55.5 154 33.1
PGSC0003DMG400030371 Solanum tuberosum HOM05D010709 ORTHO05D010376 8.1e-06 55.5 117 31.6
GSVIVG01014246001 Vitis vinifera HOM05D002172 ORTHO05D002167 8.1e-06 55.5 61 47.5


User provided reference genes

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