Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI74G1405 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 6.7e-157 557.4 293 100.0
TWI53G0703 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 1.6e-142 509.6 290 91.4
TWI77G0289 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 1.3e-139 500.0 293 90.1
Cfa019996 Carpinus fangiana HOM05D004518 ORTHO05D005434 1.2e-126 456.8 291 81.4
Thecc.05G127700 Theobroma cacao HOM05D004518 ORTHO05D005434 1.3e-123 446.8 292 79.5
Atru.chr1.1396 Acer truncatum HOM05D004518 ORTHO05D005434 1.7e-123 446.4 292 79.5
CiPaw.10G040700 Carya illinoinensis HOM05D004518 ORTHO05D005434 2.8e-123 445.7 292 79.8
COL.COLO4_07077 Corchorus olitorius HOM05D004518 ORTHO05D005434 8.2e-123 444.1 293 79.2
MELO3C026597.2 Cucumis melo HOM05D004518 ORTHO05D005434 1.1e-122 443.7 291 79.7
Gohir.D13G001500 Gossypium hirsutum HOM05D004518 ORTHO05D005434 1.4e-122 443.4 293 77.8
Gorai.013G001400 Gossypium raimondii HOM05D004518 ORTHO05D005434 1.4e-122 443.4 293 77.8
ClCG10G013700 Citrullus lanatus HOM05D004518 ORTHO05D005434 1.8e-122 443.0 291 79.0
Sed0000448 Sechium edule HOM05D004518 ORTHO05D005434 1.8e-122 443.0 292 79.5
RcHm_v2.0_Chr2g0125741 Rosa chinensis HOM05D004518 ORTHO05D005434 4.1e-122 441.8 291 78.4
CsaV3_3G042950 Cucumis sativus L. HOM05D004518 ORTHO05D005434 2.6e-121 439.1 294 78.9
CSS0002759 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 2.2e-120 436.0 294 76.9
CSS0023469 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 2.2e-120 436.0 294 76.9
Dinv05720 Davidia involucrata HOM05D004518 ORTHO05D005434 3.8e-120 435.3 291 78.4
Glyma.19G129500 Glycine max HOM05D004518 ORTHO05D005434 3.2e-119 432.2 294 78.2
GSVIVG01025741001 Vitis vinifera HOM05D004518 ORTHO05D005434 3.2e-119 432.2 294 76.9
Dinv03206 Davidia involucrata HOM05D004518 ORTHO05D005434 5.5e-119 431.4 293 77.5
Thhalv10006131m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 5.5e-119 431.4 293 78.5
FAN05G1433 Fragaria x ananassa HOM05D004518 ORTHO05D005434 9.4e-119 430.6 291 77.0
Sed0017951 Sechium edule HOM05D004518 ORTHO05D005434 9.4e-119 430.6 289 77.9
MD14G1089500 Malus domestica HOM05D004518 ORTHO05D005434 2.7e-118 429.1 290 76.9
AT3G56740 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 3.6e-118 428.7 293 77.8
Lj1g0025115 Lotus japonicus HOM05D004518 ORTHO05D005434 3.6e-118 428.7 292 76.4
Medtr7g089550 Medicago truncatula HOM05D004518 ORTHO05D005434 3.6e-118 428.7 292 76.4
Prupe.7G034400 Prunus persica HOM05D004518 ORTHO05D005434 4.7e-118 428.3 291 77.3
Phvul.001G121800 Phaseolus vulgaris HOM05D004518 ORTHO05D005434 6.1e-118 427.9 295 76.3
CANSAT64G1638 Cannabis sativa HOM05D004518 ORTHO05D005434 8.0e-118 427.6 292 78.8
CiPaw.09G048700 Carya illinoinensis HOM05D004518 ORTHO05D005434 8.0e-118 427.6 292 75.7
Sp5g05830 Schrenkiella parvula HOM05D004518 ORTHO05D005434 8.0e-118 427.6 292 76.7
MD12G1096200 Malus domestica HOM05D004518 ORTHO05D005434 1.8e-117 426.4 290 76.9
Manes.09G003700 Manihot esculenta HOM05D004518 ORTHO05D005434 1.8e-117 426.4 291 76.6
Glyma.03G126400 Glycine max HOM05D004518 ORTHO05D005434 2.3e-117 426.0 294 77.6
Hma1.2p1_0252F.1_g102810 Hydrangea macrophylla HOM05D004518 ORTHO05D005434 2.3e-117 426.0 294 77.9
Lalb_Chr14g0365751 Lupinus albus HOM05D004518 ORTHO05D005434 3.9e-117 425.2 292 76.0
Duzib106G1523 Durio zibethinus HOM05D004518 ORTHO05D005434 5.2e-117 424.9 293 73.7
THA.LOC104803258 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 5.2e-117 424.9 294 76.9
Actinidia06430 Actinidia chinensis HOM05D004518 ORTHO05D005434 6.7e-117 424.5 294 76.9
FvH4_6g25340 Fragaria vesca HOM05D004518 ORTHO05D005434 8.8e-117 424.1 291 75.9
CARHR166870 Cardamine hirsuta HOM05D004518 ORTHO05D005434 1.1e-116 423.7 293 76.5
AL5G38100 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 1.5e-116 423.3 293 77.1
BcaC07g40121 Brassica carinata HOM05D004518 ORTHO05D005434 2.0e-116 422.9 293 76.8
FAN09G3120 Fragaria x ananassa HOM05D004518 ORTHO05D005434 3.3e-116 422.2 316 71.5
Carub.0005s2348 Capsella rubella HOM05D004518 ORTHO05D005434 5.7e-116 421.4 293 76.8
Potri.006G040100 Populus trichocarpa HOM05D004518 ORTHO05D005434 7.4e-116 421.0 292 75.7
PGR031G0872 Punica granatum HOM05D004518 ORTHO05D005434 1.3e-115 420.2 292 75.3
VMungo1383G1992 Vigna mungo HOM05D004518 ORTHO05D005434 2.2e-115 419.5 295 74.9
Lalb_Chr24g0400371 Lupinus albus HOM05D004518 ORTHO05D005434 3.7e-115 418.7 292 75.7
THA.LOC104824396 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 3.7e-115 418.7 295 74.9
BcaC07g39982 Brassica carinata HOM05D004518 ORTHO05D005434 6.3e-115 417.9 293 77.1
Aa31LG10G11580 Aethionema arabicum HOM05D004518 ORTHO05D005434 3.1e-114 415.6 293 76.5
Haze_20236 Corylus avellana HOM05D002003 ORTHO05D005434 3.1e-114 415.6 325 70.2
A09p49580 Brassica napus HOM05D004518 ORTHO05D005434 7.0e-114 414.5 305 74.8
BraA09t40411Z Brassica rapa HOM05D004518 ORTHO05D005434 7.0e-114 414.5 305 74.8
Migut.J01644 Erythranthe guttata HOM05D004518 ORTHO05D005434 7.0e-114 414.5 292 74.3
PSO339G3176 Papaver somniferum HOM05D004518 ORTHO05D005434 9.1e-114 414.1 294 73.8
BolC8t50814H Brassica oleracea HOM05D004518 ORTHO05D005434 2.9e-112 409.1 305 74.1
PSO384G3583 Papaver somniferum HOM05D004518 ORTHO05D005434 8.5e-112 407.5 294 73.5
arahy.Tifrunner.gnm1.ann1.5HY1FK Arachis hypogaea HOM05D004518 ORTHO05D005434 1.5e-111 406.8 322 67.7
Ciclev10012184m.g Citrus clementina HOM05D004518 ORTHO05D005434 1.2e-110 403.7 326 69.3
Cc06_g19630 Coffea canephora HOM05D004518 ORTHO05D005434 4.7e-110 401.7 290 71.4
Sopen10g031320 Solanum pennellii HOM05D004518 ORTHO05D005434 4.7e-110 401.7 294 71.1
PGSC0003DMG400023695 Solanum tuberosum HOM05D004518 ORTHO05D005434 1.4e-109 400.2 294 71.1
Oeu022968.1 Olea europaea HOM05D004518 ORTHO05D005434 6.7e-109 397.9 292 72.9
Peaxi162Scf00696g00027 Petunia axillaris HOM05D004518 ORTHO05D005434 1.2e-108 397.1 297 70.7
Rhsim07G0181600 Rhododendron simsii HOM05D004518 ORTHO05D005434 1.2e-108 397.1 316 68.0
SGA_v2.0_scaffold69G23161 Striga asiatica HOM05D004518 ORTHO05D005434 1.5e-108 396.7 290 72.8
Thhalv10017035m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 3.3e-108 395.6 296 72.6
ECA247G2040 Erigeron canadensis HOM05D004518 ORTHO05D005434 4.4e-108 395.2 292 72.6
HanXRQChr10g0292841 Helianthus annuus HOM05D004518 ORTHO05D005434 5.7e-108 394.8 292 71.6
C08p31960 Brassica napus HOM05D004518 ORTHO05D005434 9.7e-108 394.0 304 72.4
Lsat_1_v5_gn_9_30021 Lactuca sativa HOM05D004518 ORTHO05D005434 9.7e-108 394.0 292 71.9
Solyc10g080810.2 Solanum lycopersicum HOM05D004518 ORTHO05D005434 2.2e-107 392.9 294 69.7
Sp4g23460 Schrenkiella parvula HOM05D004518 ORTHO05D005434 2.8e-107 392.5 293 73.0
MBI13_g09215_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 1.1e-106 390.6 296 71.3
TAR623G1611 Trochodendron aralioides HOM05D004518 ORTHO05D005434 7.0e-106 387.9 292 71.2
AL4G39130 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 1.6e-105 386.7 292 71.9
AT2G41160 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 5.9e-105 384.8 292 71.6
CARHR136250 Cardamine hirsuta HOM05D004518 ORTHO05D005434 1.0e-104 384.0 292 71.2
BraA05t19203Z Brassica rapa HOM05D004518 ORTHO05D005434 1.7e-104 383.3 295 71.5
MSTRG.19796 Avicennia marina HOM05D004518 ORTHO05D005434 3.8e-104 382.1 291 69.8
Eucgr.A02232 Eucalyptus grandis HOM05D004518 ORTHO05D005434 5.0e-104 381.7 293 68.3
MBI19_g14619_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 5.0e-104 381.7 322 65.2
Oeu063781.2 Olea europaea HOM05D004518 ORTHO05D005434 1.1e-103 380.6 352 60.8
Nitab4.5_0001173g0020 Nicotiana tabacum HOM05D004518 ORTHO05D005434 2.5e-103 379.4 292 68.8
Eucgr.K01645 Eucalyptus grandis HOM05D004518 ORTHO05D005434 4.2e-103 378.6 291 68.0
Aa31LG3G910 Aethionema arabicum HOM05D004518 ORTHO05D005434 1.2e-102 377.1 290 69.7
unitig_744.g24180 Utricularia gibba HOM05D004518 ORTHO05D005434 3.6e-102 375.6 294 68.0
Carub.0004s2347 Capsella rubella HOM05D004518 ORTHO05D005434 4.7e-102 375.2 292 70.2
EL10Ac3g07249 Beta vulgaris HOM05D004518 ORTHO05D005434 8.0e-102 374.4 293 69.6
SGA_v2.0_scaffold66G22264 Striga asiatica HOM05D004518 ORTHO05D005434 1.0e-101 374.0 282 71.6
Potri.016G035800 Populus trichocarpa HOM05D004518 ORTHO05D005434 3.0e-101 372.5 290 69.7
BolC4t21891H Brassica oleracea HOM05D004518 ORTHO05D005434 4.0e-101 372.1 296 70.3
Gohir.A13G002100 Gossypium hirsutum HOM05D004518 ORTHO05D005434 5.2e-101 371.7 293 68.9
Nn7g36811 Nelumbo nucifera HOM05D004518 ORTHO05D005434 5.2e-101 371.7 272 70.6
Aa31LG3G900 Aethionema arabicum HOM05D004518 ORTHO05D005434 8.8e-101 370.9 309 66.3
QL07p011297 Quercus lobata HOM05D004518 ORTHO05D005434 5.4e-98 361.7 277 70.4
A05p02070 Brassica napus HOM05D004518 ORTHO05D005434 7.0e-98 361.3 287 70.0
BcaC02g12756 Brassica carinata HOM05D004518 ORTHO05D005434 9.1e-98 360.9 337 62.6
C04p02460 Brassica napus HOM05D004518 ORTHO05D005434 2.7e-97 359.4 288 70.1
Peaxi162Scf00076g00330 Petunia axillaris HOM05D004518 ORTHO05D005434 2.9e-96 355.9 285 67.7
unitig_21.g20688 Utricularia gibba HOM05D004518 ORTHO05D005434 8.6e-96 354.4 294 62.9
CDE08G0004 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 3.3e-95 352.4 296 63.2
Duzib128G0186 Durio zibethinus HOM05D004518 ORTHO05D005434 4.2e-95 352.1 238 75.2
FAN02G2919 Fragaria x ananassa HOM05D004518 ORTHO05D005434 9.5e-95 350.9 238 75.2
Aqoxy2G00434 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 4.0e-93 345.5 239 72.0
vmacro05025 Vaccinium macrocarpon HOM05D004518 ORTHO05D005434 1.1e-90 337.4 305 62.0
HPP92_018980 Vanilla planifolia HOM05D004518 ORTHO05D005434 1.4e-90 337.0 293 62.8
CDE08G0582 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 5.4e-90 335.1 294 62.9
CAN.G128.73 Capsicum annuum HOM05D004518 ORTHO05D005434 2.0e-89 333.2 240 71.7
Zm00001eb128690 Zea mays HOM05D004518 ORTHO05D005434 2.9e-88 329.3 294 60.5
Os01g0268800 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 6.1e-86 321.6 292 61.3
Sc13g0001070 Simmondsia chinensis HOM05D004518 ORTHO05D005434 1.5e-84 317.0 197 82.7
Hund19087 Selenicereus undatus HOM05D004518 ORTHO05D005434 6.4e-83 311.6 293 61.4
arahy.Tifrunner.gnm1.ann1.CJ2XLM Arachis hypogaea HOM05D004518 ORTHO05D005434 7.8e-81 304.7 312 57.7
Psat3g079720 Pisum sativum HOM05D004518 ORTHO05D005434 1.5e-79 300.4 197 76.6
Hund24582 Selenicereus undatus HOM05D004518 ORTHO05D005434 1.6e-78 297.0 291 60.5
AUR62030305 Chenopodium quinoa HOM05D004518 ORTHO05D005434 2.8e-78 296.2 293 58.7
Sabra06G0027100 Salix brachista HOM05D004518 ORTHO05D005434 5.2e-77 292.0 273 64.8
TPR.G16082 Trifolium pratense HOM05D002003 ORTHO05D002037 3.4e-76 289.3 201 75.6
Actinidia22259 Actinidia chinensis HOM05D004518 ORTHO05D005434 9.8e-76 287.7 215 74.4
Mapoly0023s0107 Marchantia polymorpha HOM05D004518 ORTHO05D005434 2.9e-75 286.2 305 52.5
AUR62018357 Chenopodium quinoa HOM05D004518 ORTHO05D005434 1.9e-74 283.5 293 57.7
DCAR_020579 Daucus carota HOM05D004518 ORTHO05D005434 1.6e-73 280.4 294 56.5
HPP92_001027 Vanilla planifolia HOM05D004518 ORTHO05D005434 1.6e-73 280.4 248 60.1
Pp3c15_13440 Physcomitrium patens HOM05D004518 ORTHO05D005434 6.6e-72 275.0 294 52.0
SMO364G0164 Selaginella moellendorffii HOM05D004518 ORTHO05D005434 5.6e-71 271.9 300 52.7
Zm00001eb150410 Zea mays HOM05D004518 ORTHO05D005434 1.2e-70 270.8 274 55.8
Aqoxy2G02076 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 6.2e-70 268.5 204 68.6
Lj1A1090G38 Lonicera japonica HOM05D004518 ORTHO05D005434 5.8e-68 261.9 288 54.9
SHI48963 Sapria himalayana HOM05D004518 ORTHO05D005434 3.7e-67 259.2 369 45.0
Pp3c9_17200 Physcomitrium patens HOM05D004518 ORTHO05D005434 1.4e-66 257.3 275 51.6
ATR0307G082 Amborella trichopoda HOM05D004518 ORTHO05D005434 3.5e-65 252.7 204 66.7
CDE02G2541 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 1.1e-63 247.7 288 50.7
SGA_v2.0_scaffold66G22363 Striga asiatica HOM05D004518 ORTHO05D005434 1.2e-62 244.2 325 47.7
AagrBONN_evm.TU.Sc2ySwM_344.4495 Anthoceros agrestis HOM05D004518 ORTHO05D005434 2.9e-59 233.0 223 54.7
Os01g0806000 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 3.2e-58 229.6 197 61.4
Lj2A402T37 Lonicera japonica HOM05D004518 ORTHO05D005434 3.4e-52 209.5 179 65.9
CBR_g11167 Chara braunii HOM05D004518 ORTHO05D005434 9.9e-52 208.0 322 41.3
Cpa.g.sc92.78 Carica papaya HOM05D004518 ORTHO05D005434 9.3e-50 201.4 123 79.7
CBR_g18715 Chara braunii HOM05D004518 ORTHO05D005434 1.9e-47 193.7 334 38.9
Pp3c26_11360 Physcomitrium patens HOM05D004518 ORTHO05D005434 1.5e-36 157.5 331 36.3
TPR.G27640 Trifolium pratense HOM05D004518 ORTHO05D005434 9.6e-31 138.3 106 69.8
MSTRG.5996 Avicennia marina HOM05D004518 ORTHO05D005434 3.1e-29 133.3 91 75.8
Cre08.g386050 Chlamydomonas reinhardtii HOM05D004518 ORTHO05D005434 2.9e-27 126.7 308 33.4
SEGI_26369 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 3.2e-26 123.2 79 70.9
Psat3g079760 Pisum sativum HOM05D004518 ORTHO05D005434 1.4e-21 107.8 79 74.7
BolC4t21949H Brassica oleracea HOM05D004518 ORTHO05D005434 4.2e-18 96.3 229 40.2
TAR369G0459 Trochodendron aralioides HOM05D004518 ORTHO05D005434 5.5e-18 95.9 98 60.2
C04p03070 Brassica napus HOM05D004518 ORTHO05D005434 3.6e-17 93.2 269 36.8
Dinv05308 Davidia involucrata HOM05D004518 ORTHO05D005434 3.3e-15 86.7 61 73.8
MBI19_g45264_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 5.7e-15 85.9 143 42.7
MCO13G544 Micromonas commoda HOM05D004518 ORTHO05D005434 1.7e-14 84.3 329 29.5
FAN02G0789 Fragaria x ananassa HOM05D004518 ORTHO05D011253 3.1e-13 80.1 53 79.2
PGSC0003DMG400012448 Solanum tuberosum HOM05D004518 ORTHO05D005434 2.2e-06 57.4 40 67.5
PGSC0003DMG400010553 Solanum tuberosum HOM05D004518 ORTHO05D005434 8.2e-06 55.5 36 69.4


User provided reference genes

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