Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI74G0733 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 4.0e-184 647.9 316 100.0
TWI53G1663 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 1.4e-155 553.1 318 86.8
Thecc.05G029300 Theobroma cacao HOM05D004212 ORTHO05D005128 1.2e-108 397.1 318 67.0
Eucgr.K03043 Eucalyptus grandis HOM05D004212 ORTHO05D005128 3.3e-101 372.5 313 61.3
GSVIVG01034068001 Vitis vinifera HOM05D004212 ORTHO05D005128 1.6e-100 370.2 317 64.7
Gorai.002G255500 Gossypium raimondii HOM05D004212 ORTHO05D005128 1.4e-99 367.1 319 63.9
Haze_20891 Corylus avellana HOM05D004212 ORTHO05D005128 1.8e-99 366.7 347 61.1
CiPaw.09G201200 Carya illinoinensis HOM05D004212 ORTHO05D005128 3.1e-99 365.9 318 62.6
Haze_20882 Corylus avellana HOM05D004212 ORTHO05D005128 4.0e-99 365.5 347 60.8
Atru.chr8.2089 Acer truncatum HOM05D004212 ORTHO05D005128 5.2e-99 365.2 318 62.6
Gohir.D01G209900 Gossypium hirsutum HOM05D004212 ORTHO05D005128 6.8e-99 364.8 320 64.1
CsaV3_4G025590 Cucumis sativus L. HOM05D004212 ORTHO05D005128 1.2e-98 364.0 335 61.2
COL.COLO4_14697 Corchorus olitorius HOM05D004212 ORTHO05D005128 3.4e-98 362.5 318 62.3
Gohir.A01G221000 Gossypium hirsutum HOM05D004212 ORTHO05D005128 5.8e-98 361.7 319 63.3
TAR633G1640 Trochodendron aralioides HOM05D004212 ORTHO05D005128 5.8e-98 361.7 318 61.3
CANSAT35G0035 Cannabis sativa HOM05D004212 ORTHO05D005128 3.7e-97 359.0 320 65.0
Cfa010180 Carpinus fangiana HOM05D004212 ORTHO05D005128 6.4e-97 358.2 321 63.9
ClCG04G007620 Citrullus lanatus HOM05D004212 ORTHO05D005128 3.2e-96 355.9 335 60.0
Manes.09G098300 Manihot esculenta HOM05D004212 ORTHO05D005128 3.2e-96 355.9 320 62.5
MELO3C003185.2 Cucumis melo HOM05D004212 ORTHO05D005128 4.1e-96 355.5 335 60.0
Prupe.6G264400 Prunus persica HOM05D004212 ORTHO05D005128 1.2e-95 354.0 332 62.3
Sed0021611 Sechium edule HOM05D004212 ORTHO05D005128 6.6e-94 348.2 328 59.5
Lalb_Chr03g0042691 Lupinus albus HOM05D004212 ORTHO05D005128 8.6e-94 347.8 322 60.2
Ca_07566_v3 Cicer arietinum L. HOM05D004212 ORTHO05D005128 1.1e-93 347.4 320 59.4
FAN12G3486 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.1e-93 347.4 318 64.8
FAN12G2442 Fragaria x ananassa HOM05D004212 ORTHO05D005128 4.3e-93 345.5 318 64.5
arahy.Tifrunner.gnm1.ann1.MS11WY Arachis hypogaea HOM05D004212 ORTHO05D005128 3.1e-91 339.3 323 60.1
arahy.Tifrunner.gnm1.ann1.PUF7HK Arachis hypogaea HOM05D004212 ORTHO05D005128 8.9e-91 337.8 323 59.4
RcHm_v2.0_Chr4g0406841 Rosa chinensis HOM05D004212 ORTHO05D005128 1.5e-90 337.0 318 63.5
FAN07G0792 Fragaria x ananassa HOM05D004212 ORTHO05D005128 3.4e-90 335.9 318 63.2
Lalb_Chr19g0125041 Lupinus albus HOM05D004212 ORTHO05D005128 4.4e-90 335.5 315 57.8
Psat3g133560 Pisum sativum HOM05D004212 ORTHO05D005128 1.3e-89 334.0 316 57.3
Oeu001834.1 Olea europaea HOM05D004212 ORTHO05D005128 1.7e-89 333.6 321 58.6
PGR004G1844 Punica granatum HOM05D004212 ORTHO05D005128 1.9e-88 330.1 333 56.2
THA.LOC104806541 Tarenaya hassleriana HOM05D004212 ORTHO05D005128 1.9e-88 330.1 318 57.2
Ciclev10021036m.g Citrus clementina HOM05D004212 ORTHO05D005128 5.4e-88 328.6 319 60.2
TPR.G34923 Trifolium pratense HOM05D004212 ORTHO05D005128 7.1e-88 328.2 325 57.8
Solyc09g011450.4 Solanum lycopersicum HOM05D004212 ORTHO05D005128 1.2e-87 327.4 324 57.4
Sopen09g006170 Solanum pennellii HOM05D004212 ORTHO05D005128 1.2e-87 327.4 324 57.4
Lj1g0008590 Lotus japonicus HOM05D004212 ORTHO05D005128 2.7e-87 326.2 322 56.2
MD04G1138800 Malus domestica HOM05D004212 ORTHO05D005128 4.6e-87 325.5 323 59.1
arahy.Tifrunner.gnm1.ann1.59HWIF Arachis hypogaea HOM05D004212 ORTHO05D005128 1.0e-86 324.3 323 56.3
Cc06_g02090 Coffea canephora HOM05D004212 ORTHO05D005128 1.0e-86 324.3 317 57.1
CARHR163870 Cardamine hirsuta HOM05D004212 ORTHO05D005128 1.9e-85 320.1 323 58.8
MD12G1154600 Malus domestica HOM05D004212 ORTHO05D005128 1.9e-85 320.1 326 59.5
Lsat_1_v5_gn_8_84101 Lactuca sativa HOM05D004212 ORTHO05D005128 7.3e-85 318.2 319 56.1
Peaxi162Scf00975g00132 Petunia axillaris HOM05D004212 ORTHO05D005128 1.3e-84 317.4 318 57.5
Glyma.15G165200 Glycine max HOM05D004212 ORTHO05D005128 1.6e-84 317.0 315 55.9
Potri.016G103800 Populus trichocarpa HOM05D004212 ORTHO05D005128 2.8e-84 316.2 323 56.7
MSTRG.10244 Avicennia marina HOM05D004212 ORTHO05D005128 3.6e-84 315.8 318 57.2
Ciclev10012365m.g Citrus clementina HOM05D004212 ORTHO05D005128 8.1e-84 314.7 318 58.5
Duzib093G0395 Durio zibethinus HOM05D004212 ORTHO05D005128 8.1e-84 314.7 318 56.0
Sabra16G0103700 Salix brachista HOM05D004212 ORTHO05D005128 8.1e-84 314.7 323 56.7
Aa31LG10G8930 Aethionema arabicum HOM05D004212 ORTHO05D005128 1.8e-83 313.5 319 57.7
Carub.0005s2056 Capsella rubella HOM05D004212 ORTHO05D005128 2.4e-83 313.2 325 57.5
Glyma.09G059100 Glycine max HOM05D004212 ORTHO05D005128 3.1e-83 312.8 318 56.0
Phvul.006G149300 Phaseolus vulgaris HOM05D004212 ORTHO05D005128 5.3e-83 312.0 316 54.7
ECA236G3305 Erigeron canadensis HOM05D004212 ORTHO05D005128 6.9e-83 311.6 318 54.4
Nitab4.5_0008116g0030 Nicotiana tabacum HOM05D004212 ORTHO05D005128 9.0e-83 311.2 324 54.6
VMungo0540G1009 Vigna mungo HOM05D004212 ORTHO05D005128 9.0e-83 311.2 315 55.2
HanXRQChr04g0124481 Helianthus annuus HOM05D004212 ORTHO05D005128 1.2e-82 310.8 318 55.0
AL5G34970 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 3.4e-82 309.3 322 57.1
PGSC0003DMG400024265 Solanum tuberosum HOM05D004212 ORTHO05D005128 3.4e-82 309.3 336 54.8
arahy.Tifrunner.gnm1.ann1.77ZQ01 Arachis hypogaea HOM05D004212 ORTHO05D005128 4.4e-82 308.9 323 54.5
arahy.Tifrunner.gnm1.ann1.SP0BHI Arachis hypogaea HOM05D004212 ORTHO05D005128 4.4e-82 308.9 296 59.1
Hund00715 Selenicereus undatus HOM05D004212 ORTHO05D005128 2.9e-81 306.2 315 56.2
Medtr7g065120 Medicago truncatula HOM05D004212 ORTHO05D005128 3.8e-81 305.8 321 53.9
Migut.J00264 Erythranthe guttata HOM05D004212 ORTHO05D005128 1.9e-80 303.5 318 55.0
Hma1.2p1_0671F.1_g200560 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 3.2e-80 302.8 326 55.5
AT3G53970 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 4.2e-80 302.4 322 55.6
Nn2g11289 Nelumbo nucifera HOM05D004212 ORTHO05D005128 4.2e-80 302.4 321 55.1
SalBow7G2619 Salvia bowleyana HOM05D004212 ORTHO05D005128 1.2e-79 300.8 321 55.1
Sc22g0004390 Simmondsia chinensis HOM05D004212 ORTHO05D005128 3.5e-79 299.3 316 56.3
unitig_62.g23469 Utricularia gibba HOM05D004212 ORTHO05D005128 3.9e-78 295.8 319 52.4
CSS0007767 Camellia sinensis var. sinensis HOM05D004212 ORTHO05D005128 1.9e-77 293.5 320 53.8
QL07p028338 Quercus lobata HOM05D004212 ORTHO05D005128 1.9e-77 293.5 308 57.8
vmacro20195 Vaccinium macrocarpon HOM05D004212 ORTHO05D005128 5.6e-77 292.0 326 53.4
DCAR_028811 Daucus carota HOM05D004212 ORTHO05D005128 3.4e-74 282.7 312 52.2
EL10Ac3g05638 Beta vulgaris HOM05D004212 ORTHO05D005128 1.3e-73 280.8 332 51.5
HPP92_005893 Vanilla planifolia HOM05D004212 ORTHO05D005128 6.0e-71 271.9 327 52.3
Rhsim05G0199700 Rhododendron simsii HOM05D004212 ORTHO05D005128 3.3e-69 266.2 322 50.3
FvH4_4g10740 Fragaria vesca HOM05D004212 ORTHO05D005128 1.6e-68 263.8 262 61.5
AUR62021188 Chenopodium quinoa HOM05D004212 ORTHO05D005128 2.1e-68 263.5 327 51.1
Thhalv10010577m.g Eutrema salsugineum HOM05D004212 ORTHO05D005128 1.1e-67 261.2 321 53.3
Dinv35542 Davidia involucrata HOM05D004212 ORTHO05D005128 9.0e-67 258.1 266 56.0
CDE02G2360 Ceratophyllum demersum HOM05D004212 ORTHO05D005128 1.0e-65 254.6 320 48.8
AUR62015980 Chenopodium quinoa HOM05D004212 ORTHO05D005128 2.9e-65 253.1 323 49.8
BcaB02g07758 Brassica carinata HOM05D004212 ORTHO05D005128 4.9e-65 252.3 327 52.0
ATR1134G026 Amborella trichopoda HOM05D004212 ORTHO05D005128 1.1e-64 251.1 317 48.3
BraA07t29869Z Brassica rapa HOM05D004212 ORTHO05D005128 5.5e-64 248.8 329 53.2
A07p21880 Brassica napus HOM05D004212 ORTHO05D005128 9.3e-64 248.1 329 53.2
BolC6t37364H Brassica oleracea HOM05D004212 ORTHO05D005128 3.5e-63 246.1 329 52.6
BcaC08g44655 Brassica carinata HOM05D004212 ORTHO05D005128 1.8e-62 243.8 329 52.3
C06p21750 Brassica napus HOM05D004212 ORTHO05D005128 1.8e-62 243.8 329 52.3
Aqoxy4G03223 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 3.9e-62 242.7 322 46.6
PSO339G0401 Papaver somniferum HOM05D004212 ORTHO05D005128 6.7e-62 241.9 323 47.1
PSO384G5122 Papaver somniferum HOM05D004212 ORTHO05D005128 2.5e-61 240.0 329 46.8
Aqoxy7G01126 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 5.7e-61 238.8 322 46.0
Sp5g08430 Schrenkiella parvula HOM05D004212 ORTHO05D005128 9.6e-61 238.0 326 50.3
Oeu021128.1 Olea europaea HOM05D004212 ORTHO05D005128 4.8e-60 235.7 403 40.2
FAN05G0076 Fragaria x ananassa HOM05D004212 ORTHO05D005128 6.2e-60 235.3 359 46.0
FAN14G3630 Fragaria x ananassa HOM05D004212 ORTHO05D005128 6.2e-60 235.3 362 45.0
Actinidia29168 Actinidia chinensis HOM05D004212 ORTHO05D005128 1.4e-59 234.2 326 47.9
RcHm_v2.0_Chr3g0464661 Rosa chinensis HOM05D004212 ORTHO05D005128 2.4e-59 233.4 349 46.1
FvH4_6g12740 Fragaria vesca HOM05D004212 ORTHO05D005128 3.1e-59 233.0 355 44.8
Mapoly0013s0005 Marchantia polymorpha HOM05D004212 ORTHO05D005128 8.4e-57 224.9 326 46.0
Lj2C86T9 Lonicera japonica HOM05D004212 ORTHO05D005128 3.2e-56 223.0 299 49.5
Zm00001eb323600 Zea mays HOM05D004212 ORTHO05D005128 4.2e-56 222.6 318 42.5
Nn2g13527 Nelumbo nucifera HOM05D004212 ORTHO05D005128 2.1e-55 220.3 274 51.8
SGA_v2.0_scaffold673G53429 Striga asiatica HOM05D004212 ORTHO05D005128 6.1e-55 218.8 246 52.4
Os07g0548900 Oryza sativa ssp. japonica HOM05D004212 ORTHO05D005128 4.5e-50 202.6 315 41.9
Pp3c12_26190 Physcomitrium patens HOM05D004212 ORTHO05D005128 8.5e-49 198.4 324 43.8
Lj4g0027540 Lotus japonicus HOM05D004212 ORTHO05D005128 7.4e-45 185.3 341 41.9
CAN.G697.3 Capsicum annuum HOM05D004212 ORTHO05D005128 3.7e-44 183.0 209 52.2
RcHm_v2.0_Chr4g0419261 Rosa chinensis HOM05D004212 ORTHO05D005128 6.9e-43 178.7 220 54.1
CBR_g46706 Chara braunii HOM05D004212 ORTHO05D005128 1.2e-42 177.9 362 41.2
FAN09G1025 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.5e-42 177.6 145 62.1
BraA09t40156Z Brassica rapa HOM05D004212 ORTHO05D005128 6.5e-41 172.2 328 40.5
A09p46880 Brassica napus HOM05D004212 ORTHO05D005128 9.4e-40 168.3 315 41.0
SMO115G0073 Selaginella moellendorffii HOM05D004212 ORTHO05D005128 3.9e-38 162.9 318 38.1
BcaB01g00227 Brassica carinata HOM05D004212 ORTHO05D005128 4.4e-37 159.5 264 45.1
Prupe.6G304800 Prunus persica HOM05D004212 ORTHO05D005128 5.7e-37 159.1 148 60.1
Hma1.2p1_0097F.1_g048000 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 5.9e-34 149.1 115 67.0
MD12G1200000 Malus domestica HOM05D004212 ORTHO05D005128 1.0e-33 148.3 179 52.5
Lj3C960G5 Lonicera japonica HOM05D004212 ORTHO05D005128 2.9e-33 146.7 268 37.7
Carub.0003s2694 Capsella rubella HOM05D004212 ORTHO05D005128 6.5e-33 145.6 237 43.0
arahy.Tifrunner.gnm1.ann1.MGHR3Z Arachis hypogaea HOM05D004212 ORTHO05D005128 9.4e-32 141.7 115 62.6
MD17G1162600 Malus domestica HOM05D004212 ORTHO05D005128 2.7e-31 140.2 148 56.1
AL3G43180 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 6.1e-31 139.0 175 48.0
AL3G43230 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 2.3e-30 137.1 175 46.9
arahy.Tifrunner.gnm1.ann1.U24FMU Arachis hypogaea HOM05D004212 ORTHO05D005128 3.0e-30 136.7 103 68.0
PSO104G0021 Papaver somniferum HOM05D004212 ORTHO05D005128 6.7e-30 135.6 159 48.4
SEGI_10222 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 8.8e-30 135.2 183 43.7
AT1G48530 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 1.1e-29 134.8 166 47.6
PSO421G0231 Papaver somniferum HOM05D004212 ORTHO05D005128 5.7e-29 132.5 158 46.2
C08p29190 Brassica napus HOM05D004212 ORTHO05D005128 2.8e-28 130.2 298 38.6
BcaC07g39746 Brassica carinata HOM05D004212 ORTHO05D005128 3.7e-28 129.8 298 38.6
BcaB02g08498 Brassica carinata HOM05D004212 ORTHO05D005128 8.2e-28 128.6 297 38.4
BolC8t50520H Brassica oleracea HOM05D004212 ORTHO05D005128 8.2e-28 128.6 298 38.3
PSO104G0091 Papaver somniferum HOM05D004212 ORTHO05D005128 1.2e-26 124.8 171 43.9
SEGI_17127 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 1.2e-26 124.8 119 60.5
PSO104G0005 Papaver somniferum HOM05D004212 ORTHO05D005128 2.0e-26 124.0 171 43.9
Duzib106G0220 Durio zibethinus HOM05D004212 ORTHO05D005128 1.1e-24 118.2 119 57.1
CAN.G697.2 Capsicum annuum HOM05D004212 ORTHO05D005128 1.5e-24 117.9 133 53.4
Cfa009861 Carpinus fangiana HOM05D004212 ORTHO05D005128 8.0e-23 112.1 268 36.2
RcHm_v2.0_Chr4g0416021 Rosa chinensis HOM05D004212 ORTHO05D005128 8.8e-22 108.6 130 48.5
AagrBONN_evm.TU.Sc2ySwM_344.2315 Anthoceros agrestis HOM05D004212 ORTHO05D005128 1.2e-15 88.2 195 35.4
SGA_v2.0_scaffold96G28918 Striga asiatica HOM05D004212 ORTHO05D005128 5.2e-14 82.8 79 58.2
BcaC02g09118 Brassica carinata HOM05D004212 ORTHO05D005128 1.5e-13 81.3 71 59.2
BolC6t39520H Brassica oleracea HOM05D004212 ORTHO05D005128 2.0e-13 80.9 103 45.6
TAR633G2132 Trochodendron aralioides HOM05D004212 ORTHO05D005128 2.4e-11 73.9 52 67.3
FAN02G2124 Fragaria x ananassa HOM05D004212 ORTHO05D005128 4.5e-10 69.7 146 41.1
Lalb_Chr18g0052541 Lupinus albus HOM05D004212 ORTHO05D005128 2.9e-09 67.0 56 58.9
CARHR164030 Cardamine hirsuta HOM05D004212 ORTHO05D005128 2.5e-08 63.9 57 57.9
BcaC01g05774 Brassica carinata HOM05D004212 ORTHO05D005128 1.0e-06 58.5 61 55.7
MCO11G019 Micromonas commoda HOM05D004212 ORTHO05D005128 1.0e-06 58.5 88 44.3
FAN07G2658 Fragaria x ananassa HOM05D004212 ORTHO05D005128 6.8e-06 55.8 38 71.1


User provided reference genes

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