Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI74G0410 Tripterygium wilfordii HOM05D005722 ORTHO05D007934 0.0e+00 1123.6 574 100.0
Potri.006G119500 Populus trichocarpa HOM05D005722 ORTHO05D007934 3.2e-248 861.7 576 77.4
QL07p041452 Quercus lobata HOM05D005722 ORTHO05D007934 2.3e-246 855.5 575 77.2
FAN05G1451 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.1e-245 853.2 573 75.6
FAN05G4610 Fragaria x ananassa HOM05D005722 ORTHO05D007934 2.0e-245 852.4 573 75.4
Prupe.7G123300 Prunus persica HOM05D005722 ORTHO05D007934 2.4e-243 845.5 577 76.3
Duzib128G0866 Durio zibethinus HOM05D005722 ORTHO05D007934 1.0e-241 840.1 575 76.7
Sabra06G0094100 Salix brachista HOM05D005722 ORTHO05D007934 6.5e-241 837.4 505 82.0
CiPaw.09G004900 Carya illinoinensis HOM05D005722 ORTHO05D007934 1.5e-240 836.3 508 81.9
RcHm_v2.0_Chr3g0471261 Rosa chinensis HOM05D005722 ORTHO05D007934 4.2e-240 834.7 574 73.7
Atru.chr8.1708 Acer truncatum HOM05D005722 ORTHO05D007934 7.2e-240 833.9 566 75.4
Cfa016476 Carpinus fangiana HOM05D005722 ORTHO05D007934 4.7e-239 831.2 535 78.3
Gohir.A09G143300 Gossypium hirsutum HOM05D005722 ORTHO05D007934 8.0e-239 830.5 577 74.5
Manes.09G048478 Manihot esculenta HOM05D005722 ORTHO05D007934 2.3e-238 828.9 578 74.9
Hma1.2p1_0547F.1_g176330 Hydrangea macrophylla HOM05D005722 ORTHO05D007934 1.2e-237 826.6 544 75.9
FvH4_6g17170 Fragaria vesca HOM05D005722 ORTHO05D007934 5.7e-237 824.3 507 80.1
TAR623G1222 Trochodendron aralioides HOM05D005722 ORTHO05D007934 2.2e-236 822.4 575 74.6
Gorai.006G160000 Gossypium raimondii HOM05D005722 ORTHO05D007934 3.7e-236 821.6 579 74.1
Thecc.05G075200 Theobroma cacao HOM05D005722 ORTHO05D007934 8.3e-236 820.5 584 73.6
CSS0018899 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 1.1e-235 820.1 580 73.8
COL.COLO4_22250 Corchorus olitorius HOM05D005722 ORTHO05D007934 3.1e-235 818.5 500 80.6
vmacro23004 Vaccinium macrocarpon HOM05D005722 ORTHO05D007934 2.5e-232 808.9 505 80.0
MD12G1103200 Malus domestica HOM05D005722 ORTHO05D007934 1.2e-231 806.6 577 73.7
Cc06_g04740 Coffea canephora HOM05D005722 ORTHO05D007934 3.6e-231 805.1 587 70.5
CSS0022139 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 1.5e-229 799.7 506 78.9
Cpa.g.sc5.129 Carica papaya HOM05D005722 ORTHO05D007934 1.5e-229 799.7 502 78.1
Rhsim03G0086400 Rhododendron simsii HOM05D005722 ORTHO05D007934 3.4e-229 798.5 572 72.7
Peaxi162Scf00138g00041 Petunia axillaris HOM05D005722 ORTHO05D007934 9.8e-229 797.0 507 78.3
CANSAT56G0690 Cannabis sativa HOM05D005722 ORTHO05D007934 4.9e-228 794.7 506 77.5
Lj1g0006800 Lotus japonicus HOM05D005722 ORTHO05D007934 4.9e-228 794.7 567 73.0
MSTRG.19206 Avicennia marina HOM05D005722 ORTHO05D007934 1.1e-227 793.5 571 72.0
Phvul.007G226300 Phaseolus vulgaris HOM05D005722 ORTHO05D007934 1.1e-227 793.5 575 72.0
AUR62026979 Chenopodium quinoa HOM05D005722 ORTHO05D007934 2.4e-227 792.3 566 71.7
Ciclev10011424m.g Citrus clementina HOM05D005722 ORTHO05D007934 3.1e-227 792.0 502 78.9
AUR62042706 Chenopodium quinoa HOM05D005722 ORTHO05D007934 1.0e-225 786.9 567 70.9
PGR004G2571 Punica granatum HOM05D005722 ORTHO05D007934 1.7e-225 786.2 580 71.9
Aqoxy1G01041 Aquilegia oxysepala HOM05D005722 ORTHO05D007934 8.6e-225 783.9 570 70.9
Lalb_Chr02g0155431 Lupinus albus HOM05D005722 ORTHO05D007934 1.5e-224 783.1 566 72.6
VMungo0720G2103 Vigna mungo HOM05D005722 ORTHO05D007934 1.9e-224 782.7 503 76.7
Glyma.10G063100 Glycine max HOM05D005722 ORTHO05D007934 2.5e-224 782.3 582 71.0
EL10Ac7g16706 Beta vulgaris HOM05D005722 ORTHO05D007934 3.3e-224 781.9 502 78.5
Migut.J00472 Erythranthe guttata HOM05D005722 ORTHO05D007934 3.3e-224 781.9 491 78.0
Nitab4.5_0004731g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 3.3e-224 781.9 509 77.2
Ah.08g211270 Amaranthus hybridus HOM05D005722 ORTHO05D007934 9.5e-224 780.4 573 71.0
DCAR_015016 Daucus carota HOM05D005722 ORTHO05D007934 1.2e-223 780.0 485 77.9
Glyma.13G147700 Glycine max HOM05D005722 ORTHO05D007934 1.6e-223 779.6 584 70.0
Nn2g13890 Nelumbo nucifera HOM05D005722 ORTHO05D007934 2.8e-223 778.9 565 70.1
PSO339G6299 Papaver somniferum HOM05D005722 ORTHO05D007934 1.2e-221 773.5 574 69.7
PSO063G5110 Papaver somniferum HOM05D005722 ORTHO05D007934 1.5e-221 773.1 574 69.5
arahy.Tifrunner.gnm1.ann1.D7QF3J Arachis hypogaea HOM05D005722 ORTHO05D007934 2.0e-221 772.7 538 72.9
arahy.Tifrunner.gnm1.ann1.P0W3IN Arachis hypogaea HOM05D005722 ORTHO05D007934 2.0e-221 772.7 538 72.9
Lalb_Chr25g0288811 Lupinus albus HOM05D005722 ORTHO05D007934 4.4e-221 771.5 571 70.6
Lj5g0013810 Lotus japonicus HOM05D005722 ORTHO05D007934 5.7e-221 771.2 566 69.6
Lsat_1_v5_gn_2_20401 Lactuca sativa HOM05D005722 ORTHO05D007934 9.8e-221 770.4 579 69.1
Medtr7g102810 Medicago truncatula HOM05D005722 ORTHO05D007934 9.8e-221 770.4 475 79.4
CAN.G1038.3 Capsicum annuum HOM05D005722 ORTHO05D007934 2.2e-220 769.2 579 69.8
PGSC0003DMG400003879 Solanum tuberosum HOM05D005722 ORTHO05D007934 2.2e-220 769.2 502 76.5
ECA238G3369 Erigeron canadensis HOM05D005722 ORTHO05D007934 1.1e-219 766.9 556 69.2
Sopen09g003380 Solanum pennellii HOM05D005722 ORTHO05D007934 2.4e-219 765.8 506 75.7
Ca_04564_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 1.2e-218 763.5 567 70.0
TPR.G31667 Trifolium pratense HOM05D005722 ORTHO05D007934 3.5e-218 761.9 563 70.2
Medtr1g062130 Medicago truncatula HOM05D005722 ORTHO05D007934 1.3e-217 760.0 564 70.7
Haze_19473 Corylus avellana HOM05D005722 ORTHO05D007934 6.6e-217 757.7 451 81.8
Psat3g038760 Pisum sativum HOM05D005722 ORTHO05D007934 7.3e-216 754.2 553 69.8
THA.LOC104816667 Tarenaya hassleriana HOM05D005722 ORTHO05D007934 2.8e-215 752.3 552 70.7
Gohir.D09G139500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 6.2e-215 751.1 524 74.8
HanXRQChr14g0432851 Helianthus annuus HOM05D005722 ORTHO05D007934 6.2e-215 751.1 556 68.9
Sc20g0005780 Simmondsia chinensis HOM05D005722 ORTHO05D007934 4.4e-213 745.0 507 74.0
SalBow3G1392 Salvia bowleyana HOM05D005722 ORTHO05D007934 1.3e-212 743.4 485 75.3
SalBow3G1081 Salvia bowleyana HOM05D005722 ORTHO05D007934 2.2e-212 742.7 485 75.3
CARHR209770 Cardamine hirsuta HOM05D005722 ORTHO05D007934 1.1e-211 740.3 491 72.9
Carub.0006s0238 Capsella rubella HOM05D005722 ORTHO05D007934 9.2e-211 737.3 568 66.2
Aa31LG1G21640 Aethionema arabicum HOM05D005722 ORTHO05D007934 1.2e-210 736.9 492 73.0
TPR.G22453 Trifolium pratense HOM05D005722 ORTHO05D007934 2.0e-210 736.1 550 69.8
AT5G03555 Arabidopsis thaliana HOM05D005722 ORTHO05D007934 2.7e-210 735.7 492 73.0
Solyc09g008550.4 Solanum lycopersicum HOM05D005722 ORTHO05D007934 4.6e-210 734.9 487 74.3
MBI18_g39612_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 1.7e-209 733.0 564 67.0
Thhalv10015725m.g Eutrema salsugineum HOM05D005722 ORTHO05D007934 2.3e-209 732.6 484 73.6
Psat6g077240 Pisum sativum HOM05D005722 ORTHO05D007934 2.3e-209 732.6 548 68.6
Sp6g39190 Schrenkiella parvula HOM05D005722 ORTHO05D007934 2.3e-209 732.6 491 72.7
AL6G13040 Arabidopsis lyrata HOM05D005722 ORTHO05D007934 6.6e-209 731.1 506 71.5
C03p01590 Brassica napus HOM05D005722 ORTHO05D007934 9.5e-208 727.2 583 65.5
FAN02G1363 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.2e-207 726.9 507 73.6
BolC3t12711H Brassica oleracea HOM05D005722 ORTHO05D007934 1.6e-207 726.5 583 65.5
Gohir.D09G139600 Gossypium hirsutum HOM05D005722 ORTHO05D007934 1.6e-207 726.5 553 67.3
A03p01230 Brassica napus HOM05D005722 ORTHO05D007934 3.6e-207 725.3 590 65.1
BraA03t09503Z Brassica rapa HOM05D005722 ORTHO05D007934 3.6e-207 725.3 584 65.4
SGA_v2.0_scaffold75G24819 Striga asiatica HOM05D005722 ORTHO05D007934 3.6e-207 725.3 545 68.3
Gorai.006G160100 Gossypium raimondii HOM05D005722 ORTHO05D007934 6.2e-207 724.5 553 67.1
unitig_578.g15784 Utricularia gibba HOM05D005722 ORTHO05D007934 1.1e-206 723.8 544 67.1
ClCG10G019670 Citrullus lanatus HOM05D005722 ORTHO05D007934 4.0e-206 721.8 560 66.6
Gohir.A09G143500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 1.3e-204 716.8 553 66.9
MELO3C009405.2 Cucumis melo HOM05D005722 ORTHO05D007934 1.1e-203 713.8 567 65.8
FAN14G5091 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.4e-203 713.4 442 79.4
CsaV3_3G036500 Cucumis sativus L. HOM05D005722 ORTHO05D007934 2.1e-202 709.5 568 64.6
Sed0005717 Sechium edule HOM05D005722 ORTHO05D007934 4.3e-200 701.8 511 68.3
Nitab4.5_0003906g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 5.6e-200 701.4 509 72.1
ATR0009G019 Amborella trichopoda HOM05D005722 ORTHO05D007934 2.2e-196 689.5 507 67.1
Ca_30109_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 3.9e-193 678.7 408 79.9
Eucgr.A01597 Eucalyptus grandis HOM05D005722 ORTHO05D007934 7.3e-192 674.5 574 63.6
MBI18_g31623_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 4.7e-191 671.8 500 66.0
MBI18_g39457_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 4.0e-190 668.7 500 65.6
MBI18_g19054_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 2.6e-189 666.0 500 65.4
GSVIVG01033705001 Vitis vinifera HOM05D005722 ORTHO05D007934 3.4e-189 665.6 574 63.8
Dinv35829 Davidia involucrata HOM05D005722 ORTHO05D007934 1.3e-188 663.7 482 70.3
Cfa016468 Carpinus fangiana HOM05D005722 ORTHO05D007934 2.7e-186 656.0 446 74.4
SEGI_35570 Sequoiadendron giganteum HOM05D005722 ORTHO05D007934 6.6e-185 651.4 553 60.0
HPP92_025568 Vanilla planifolia HOM05D005722 ORTHO05D007934 3.3e-176 622.5 463 66.1
Os02g0666700 Oryza sativa ssp. japonica HOM05D005722 ORTHO05D007934 6.9e-174 614.8 470 63.2
Zm00001eb249990 Zea mays HOM05D005722 ORTHO05D007934 7.6e-173 611.3 478 61.7
Cc06_g04750 Coffea canephora HOM05D005722 ORTHO05D007934 3.5e-170 602.4 479 63.3
CDE08G1312 Ceratophyllum demersum HOM05D005722 ORTHO05D007934 1.3e-167 594.0 477 65.6
Pp3c14_20990 Physcomitrium patens HOM05D005722 ORTHO05D007934 7.6e-165 584.7 474 59.5
Mapoly0002s0120 Marchantia polymorpha HOM05D005722 ORTHO05D007934 1.9e-163 580.1 475 56.6
Pp3c1_30640 Physcomitrium patens HOM05D005722 ORTHO05D007934 7.1e-163 578.2 475 58.9
SMO115G0026 Selaginella moellendorffii HOM05D005722 ORTHO05D007934 7.6e-157 558.1 479 58.2
Actinidia26637 Actinidia chinensis HOM05D005722 ORTHO05D007934 8.2e-151 538.1 447 64.2
Actinidia28931 Actinidia chinensis HOM05D005722 ORTHO05D007934 3.1e-142 509.6 372 70.7
Cre09.g389356 Chlamydomonas reinhardtii HOM05D005722 ORTHO05D007934 1.1e-139 501.1 517 48.9
Lj2P123T37 Lonicera japonica HOM05D005722 ORTHO05D007934 1.2e-138 497.7 321 80.1
Sc20g0005800 Simmondsia chinensis HOM05D005722 ORTHO05D007934 3.6e-130 469.5 331 72.2
MCO11G702 Micromonas commoda HOM05D005722 ORTHO05D007934 5.3e-126 455.7 492 48.8
PRCOL_00006021 Prasinoderma coloniale HOM05D005722 ORTHO05D007934 5.5e-123 445.7 489 47.9
Haze_19472 Corylus avellana HOM05D005722 ORTHO05D007934 2.8e-74 283.9 223 63.2
Cfa025019 Carpinus fangiana HOM05D005722 ORTHO05D123305 3.2e-62 243.8 478 32.0
Haze_02843 Corylus avellana HOM05D005722 ORTHO05D029153 6.9e-57 226.1 146 75.3
Sc20g0005790 Simmondsia chinensis HOM05D005722 ORTHO05D029153 8.2e-42 176.0 102 80.4
Pp3s34_270 Physcomitrium patens HOM05D005722 ORTHO05D317165 5.7e-35 153.3 431 25.8
TPR.G39511 Trifolium pratense HOM05D005722 ORTHO05D029153 6.1e-29 133.3 72 83.3
Lsat_1_v5_gn_4_152401 Lactuca sativa HOM05D005722 ORTHO05D007934 4.1e-25 120.6 80 80.0
FAN14G5603 Fragaria x ananassa HOM05D005722 ORTHO05D029153 3.2e-22 110.9 64 82.8
MCO11G808 Micromonas commoda HOM05D005722 ORTHO05D268580 1.3e-15 89.0 429 24.0
MCO10G252 Micromonas commoda HOM05D005722 ORTHO05D270642 2.7e-13 81.3 433 25.6
Cfa016469 Carpinus fangiana HOM05D005722 ORTHO05D125356 2.5e-06 58.2 28 92.9


User provided reference genes

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