Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI74G0214 Tripterygium wilfordii HOM05D006449 ORTHO05D007995 3.5e-64 248.1 119 100.0
TWI77G0881 Tripterygium wilfordii HOM05D006449 ORTHO05D007995 1.5e-62 242.7 119 97.5
Manes.09G065800 Manihot esculenta HOM05D006449 ORTHO05D007995 7.1e-57 223.8 118 85.6
Nn2g13802 Nelumbo nucifera HOM05D006449 ORTHO05D007995 3.5e-56 221.5 118 85.6
CsaV3_6G039970 Cucumis sativus L. HOM05D006449 ORTHO05D007995 1.7e-55 219.2 118 84.7
ClCG04G009390 Citrullus lanatus HOM05D006449 ORTHO05D007995 3.3e-54 214.9 118 85.6
CiPaw.10G129500 Carya illinoinensis HOM05D006449 ORTHO05D007995 5.6e-54 214.2 116 84.5
Nn6g35286 Nelumbo nucifera HOM05D006449 ORTHO05D007995 5.6e-54 214.2 118 82.2
MSTRG.5764 Avicennia marina HOM05D006449 ORTHO05D007995 7.3e-54 213.8 118 84.7
Gorai.002G246900 Gossypium raimondii HOM05D006449 ORTHO05D007995 9.6e-54 213.4 118 83.1
Thecc.05G067500 Theobroma cacao HOM05D006449 ORTHO05D007995 9.6e-54 213.4 118 84.7
Actinidia08770 Actinidia chinensis HOM05D006449 ORTHO05D007995 1.3e-53 213.0 118 82.2
Psat6g074040 Pisum sativum HOM05D006449 ORTHO05D007995 1.6e-53 212.6 118 80.5
Glyma.10G055200 Glycine max HOM05D006449 ORTHO05D007995 2.1e-53 212.2 118 81.4
THA.LOC104823475 Tarenaya hassleriana HOM05D006449 ORTHO05D007995 2.1e-53 212.2 119 83.2
Ca_11505_v3 Cicer arietinum L. HOM05D006449 ORTHO05D007995 2.8e-53 211.8 118 81.4
Phvul.007G219000 Phaseolus vulgaris HOM05D006449 ORTHO05D007995 3.6e-53 211.5 118 83.1
CSS0028691 Camellia sinensis var. sinensis HOM05D006449 ORTHO05D007995 4.8e-53 211.1 118 81.4
Duzib093G0849 Durio zibethinus HOM05D006449 ORTHO05D007995 4.8e-53 211.1 118 82.2
Glyma.13G142300 Glycine max HOM05D006449 ORTHO05D007995 6.2e-53 210.7 118 81.4
Hma1.2p1_0205F.1_g086990 Hydrangea macrophylla HOM05D006449 ORTHO05D007995 6.2e-53 210.7 118 82.2
Atru.chr8.1798 Acer truncatum HOM05D006449 ORTHO05D007995 1.1e-52 209.9 119 81.5
PGR004G0793 Punica granatum HOM05D006449 ORTHO05D007995 1.1e-52 209.9 118 82.2
Gohir.A01G213500 Gossypium hirsutum HOM05D006449 ORTHO05D007995 1.4e-52 209.5 118 81.4
Medtr1g063190 Medicago truncatula HOM05D006449 ORTHO05D007995 1.8e-52 209.1 118 79.7
PGSC0003DMG400003863 Solanum tuberosum HOM05D006449 ORTHO05D007995 1.8e-52 209.1 117 82.9
Gohir.D01G202200 Gossypium hirsutum HOM05D006449 ORTHO05D007995 2.4e-52 208.8 118 82.2
CAN.G900.29 Capsicum annuum HOM05D006449 ORTHO05D007995 4.0e-52 208.0 117 82.1
Sed0015731 Sechium edule HOM05D006449 ORTHO05D007995 4.0e-52 208.0 118 81.4
Solyc09g008230.3 Solanum lycopersicum HOM05D006449 ORTHO05D007995 4.0e-52 208.0 117 82.1
Sopen09g003050 Solanum pennellii HOM05D006449 ORTHO05D007995 4.0e-52 208.0 117 82.1
VMungo0720G3134 Vigna mungo HOM05D006449 ORTHO05D007995 4.0e-52 208.0 118 82.2
EL10Ac7g16636 Beta vulgaris HOM05D006449 ORTHO05D007995 5.3e-52 207.6 118 81.4
Nitab4.5_0000814g0040 Nicotiana tabacum HOM05D006449 ORTHO05D007995 9.0e-52 206.8 117 80.3
Peaxi162Scf00311g00119 Petunia axillaris HOM05D006449 ORTHO05D007995 9.0e-52 206.8 117 80.3
Nitab4.5_0003861g0010 Nicotiana tabacum HOM05D006449 ORTHO05D007995 2.6e-51 205.3 117 79.5
HanXRQChr15g0491571 Helianthus annuus HOM05D006449 ORTHO05D007995 3.4e-51 204.9 118 80.5
Lj5g0001377 Lotus japonicus HOM05D006449 ORTHO05D007995 4.4e-51 204.5 118 79.7
AUR62040339 Chenopodium quinoa HOM05D006449 ORTHO05D007995 9.9e-51 203.4 118 78.8
AUR62042508 Chenopodium quinoa HOM05D006449 ORTHO05D007995 1.7e-50 202.6 118 78.8
Potri.016G093500 Populus trichocarpa HOM05D006449 ORTHO05D007995 1.7e-50 202.6 121 81.0
TPR.G11267 Trifolium pratense HOM05D006449 ORTHO05D007995 2.2e-50 202.2 118 78.0
Sabra16G0098600 Salix brachista HOM05D006449 ORTHO05D007995 2.9e-50 201.8 121 79.3
Thhalv10017435m.g Eutrema salsugineum HOM05D006449 ORTHO05D007995 8.4e-50 200.3 116 78.4
Aqoxy1G01150 Aquilegia oxysepala HOM05D006449 ORTHO05D007995 1.1e-49 199.9 118 78.0
BcaB01g03807 Brassica carinata HOM05D006449 ORTHO05D007995 1.1e-49 199.9 117 77.8
CDE09G0874 Ceratophyllum demersum HOM05D006449 ORTHO05D007995 1.4e-49 199.5 118 78.0
A05p08950 Brassica napus HOM05D006449 ORTHO05D007995 1.9e-49 199.1 117 77.8
C04p11060 Brassica napus HOM05D006449 ORTHO05D007995 1.9e-49 199.1 117 77.8
BolC4t22754H Brassica oleracea HOM05D006449 ORTHO05D007995 1.9e-49 199.1 117 77.8
BraA05t19857Z Brassica rapa HOM05D006449 ORTHO05D007995 1.9e-49 199.1 117 77.8
AT2G36930 Arabidopsis thaliana HOM05D006449 ORTHO05D007995 2.4e-49 198.7 117 77.8
ECA248G0052 Erigeron canadensis HOM05D006449 ORTHO05D007995 3.2e-49 198.4 118 78.8
Peaxi162Scf00638g00414 Petunia axillaris HOM05D006449 ORTHO05D007995 3.2e-49 198.4 117 80.3
Hund26578 Selenicereus undatus HOM05D006449 ORTHO05D007995 3.2e-49 198.4 118 77.1
BcaB02g09320 Brassica carinata HOM05D006449 ORTHO05D007995 4.2e-49 198.0 117 76.9
BcaC02g11815 Brassica carinata HOM05D006449 ORTHO05D007995 4.2e-49 198.0 117 76.9
DCAR_015000 Daucus carota HOM05D006449 ORTHO05D007995 5.4e-49 197.6 119 79.0
SEGI_04945 Sequoiadendron giganteum HOM05D006449 ORTHO05D007995 5.4e-49 197.6 114 80.7
CARHR131400 Cardamine hirsuta HOM05D006449 ORTHO05D007995 7.1e-49 197.2 119 75.6
Oeu041490.2 Olea europaea HOM05D006449 ORTHO05D007995 7.1e-49 197.2 125 76.0
AL4G33170 Arabidopsis lyrata HOM05D006449 ORTHO05D007995 1.2e-48 196.4 117 76.1
A03p20330 Brassica napus HOM05D006449 ORTHO05D007995 1.6e-48 196.1 117 76.1
BraA03t11279Z Brassica rapa HOM05D006449 ORTHO05D007995 1.6e-48 196.1 117 76.1
Hund20380 Selenicereus undatus HOM05D006449 ORTHO05D007995 2.1e-48 195.7 118 76.3
GSVIVG01033644001 Vitis vinifera HOM05D006449 ORTHO05D007995 2.7e-48 195.3 119 78.2
BcaC01g05620 Brassica carinata HOM05D006449 ORTHO05D007995 3.5e-48 194.9 117 75.2
C03p23890 Brassica napus HOM05D006449 ORTHO05D007995 3.5e-48 194.9 117 75.2
BolC3t14781H Brassica oleracea HOM05D006449 ORTHO05D007995 3.5e-48 194.9 117 75.2
Sp4g19220 Schrenkiella parvula HOM05D006449 ORTHO05D007995 3.5e-48 194.9 117 76.1
Carub.0004s1878 Capsella rubella HOM05D006449 ORTHO05D007995 1.0e-47 193.4 117 76.1
FAN02G2429 Fragaria x ananassa HOM05D006449 ORTHO05D007995 1.7e-47 192.6 120 77.5
RcHm_v2.0_Chr3g0470301 Rosa chinensis HOM05D006449 ORTHO05D007995 2.3e-47 192.2 120 78.3
FAN05G0981 Fragaria x ananassa HOM05D006449 ORTHO05D007995 3.0e-47 191.8 120 77.5
FAN14G2797 Fragaria x ananassa HOM05D006449 ORTHO05D007995 3.0e-47 191.8 120 77.5
FAN14G3008 Fragaria x ananassa HOM05D006449 ORTHO05D007995 3.0e-47 191.8 120 77.5
FvH4_6g16440 Fragaria vesca HOM05D006449 ORTHO05D007995 3.9e-47 191.4 119 77.3
Os08g0564500 Oryza sativa ssp. japonica HOM05D006449 ORTHO05D007995 1.5e-46 189.5 123 73.2
Zm00001eb038700 Zea mays HOM05D006449 ORTHO05D007995 3.6e-45 184.9 123 71.5
CSS0018897 Camellia sinensis var. sinensis HOM05D006449 ORTHO05D007995 1.1e-44 183.3 132 68.9
Lsat_1_v5_gn_1_52340 Lactuca sativa HOM05D006449 ORTHO05D007995 4.0e-44 181.4 118 73.7
unitig_749.g14285 Utricularia gibba HOM05D006449 ORTHO05D007995 1.5e-43 179.5 117 71.8
Aa31LG5G22150 Aethionema arabicum HOM05D006449 ORTHO05D007995 6.4e-42 174.1 119 69.7
SGA_v2.0_scaffold40G15520 Striga asiatica HOM05D006449 ORTHO05D007995 1.6e-40 169.5 91 85.7
Cfa017617 Carpinus fangiana HOM05D006449 ORTHO05D007995 4.6e-40 167.9 128 67.2
Lalb_Chr02g0155801 Lupinus albus HOM05D006449 ORTHO05D007995 6.0e-40 167.5 89 83.1
QL07p043219 Quercus lobata HOM05D006449 ORTHO05D007995 6.0e-40 167.5 88 83.0
Sabra06G0098200 Salix brachista HOM05D006449 ORTHO05D007995 7.9e-40 167.2 92 83.7
SGA_v2.0_scaffold75G24848 Striga asiatica HOM05D006449 ORTHO05D007995 2.3e-39 165.6 91 83.5
HanXRQChr01g0027751 Helianthus annuus HOM05D006449 ORTHO05D007995 3.0e-39 165.2 91 81.3
MELO3C024474.2 Cucumis melo HOM05D006449 ORTHO05D007995 3.9e-39 164.9 89 83.1
Rhsim03G0091200 Rhododendron simsii HOM05D006449 ORTHO05D007995 6.7e-39 164.1 91 80.2
Mapoly0185s0018 Marchantia polymorpha HOM05D006449 ORTHO05D007995 1.1e-38 163.3 116 65.5
Pp3c13_22060 Physcomitrium patens HOM05D006449 ORTHO05D007995 1.9e-38 162.5 116 66.4
COL.COLO4_26955 Corchorus olitorius HOM05D006449 ORTHO05D007995 2.5e-38 162.2 101 73.3
ATR0219G007 Amborella trichopoda HOM05D006449 ORTHO05D007995 8.1e-37 157.1 89 77.5
PSO063G3287 Papaver somniferum HOM05D006449 ORTHO05D007995 8.1e-37 157.1 116 66.4
PSO339G4301 Papaver somniferum HOM05D006449 ORTHO05D007995 8.1e-37 157.1 116 66.4
CANSAT80G0535 Cannabis sativa HOM05D006449 ORTHO05D007995 3.1e-36 155.2 89 80.9
Cc06_g04250 Coffea canephora HOM05D006449 ORTHO05D007995 7.6e-35 150.6 76 88.2
MD12G1112600 Malus domestica HOM05D006449 ORTHO05D007995 7.6e-35 150.6 89 78.7
Potri.006G124100 Populus trichocarpa HOM05D006449 ORTHO05D007995 1.3e-34 149.8 77 89.6
MD00G1155400 Malus domestica HOM05D006449 ORTHO05D007995 2.9e-34 148.7 89 77.5
Ciclev10013228m.g Citrus clementina HOM05D006449 ORTHO05D007995 6.5e-34 147.5 85 80.0
Nitab4.5_0029554g0010 Nicotiana tabacum HOM05D006449 ORTHO05D007995 8.4e-34 147.1 89 74.2
arahy.Tifrunner.gnm1.ann1.9GBJ25 Arachis hypogaea HOM05D006449 ORTHO05D007995 1.9e-33 146.0 84 78.6
arahy.Tifrunner.gnm1.ann1.D9FX9P Arachis hypogaea HOM05D006449 ORTHO05D007995 1.9e-33 146.0 84 78.6
Sc20g0005520 Simmondsia chinensis HOM05D006449 ORTHO05D007995 2.5e-33 145.6 84 77.4
HPP92_025806 Vanilla planifolia HOM05D006449 ORTHO05D007995 5.5e-33 144.4 91 74.7
Migut.J00654 Erythranthe guttata HOM05D006449 ORTHO05D007995 1.3e-31 139.8 84 73.8
Manes.08G011000 Manihot esculenta HOM05D006449 ORTHO05D007995 3.9e-31 138.3 95 70.5
Haze_20546 Corylus avellana HOM05D006449 ORTHO05D007995 1.9e-30 136.0 98 66.3
vmacro07293 Vaccinium macrocarpon HOM05D006449 ORTHO05D007995 2.1e-29 132.5 96 66.7
Oeu005023.1 Olea europaea HOM05D006449 ORTHO05D007995 2.8e-29 132.1 99 64.6
SMO144G0185 Selaginella moellendorffii HOM05D006449 ORTHO05D007995 2.9e-26 122.1 67 77.6
Prupe.7G129700 Prunus persica HOM05D006449 ORTHO05D007995 6.9e-20 100.9 63 71.4
TAR633G1413 Trochodendron aralioides HOM05D002509 ORTHO05D002758 1.5e-19 99.8 54 81.5
PRCOL_00003735 Prasinoderma coloniale HOM05D006449 ORTHO05D007995 7.2e-17 90.9 109 41.3
CBR_g8310 Chara braunii HOM05D006449 ORTHO05D007995 3.0e-15 85.5 116 42.2
Cre17.g734628 Chlamydomonas reinhardtii HOM05D006449 ORTHO05D007995 2.0e-14 82.8 130 39.2
MCO09G543 Micromonas commoda HOM05D006449 ORTHO05D007995 1.3e-13 80.1 147 34.7
Lj3A986G82 Lonicera japonica HOM05D006449 ORTHO05D007995 2.8e-13 79.0 118 42.4
MSTRG.19181 Avicennia marina HOM05D006449 ORTHO05D007995 1.4e-09 66.6 33 87.9
HanXRQChr16g0526221 Helianthus annuus HOM05D006449 ORTHO05D007995 1.9e-09 66.2 30 90.0
Thhalv10009663m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 1.0e-07 60.5 31 87.1
unitig_75.g29315 Utricularia gibba HOM05D006449 ORTHO05D007995 9.7e-06 53.9 25 92.0


User provided reference genes

Program Settings