Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI74G0166 Tripterygium wilfordii HOM05D007171 ORTHO05D008946 2.4e-130 468.8 230 100.0
Ciclev10012666m.g Citrus clementina HOM05D007171 ORTHO05D008946 4.1e-69 265.4 232 59.9
Actinidia11236 Actinidia chinensis HOM05D007171 ORTHO05D008946 6.6e-67 258.1 232 55.2
CiPaw.10G139300 Carya illinoinensis HOM05D007171 ORTHO05D008946 1.1e-66 257.3 232 55.6
Manes.09G071900 Manihot esculenta HOM05D007171 ORTHO05D008946 1.5e-66 256.9 233 58.4
GSVIVG01025575001 Vitis vinifera HOM05D007171 ORTHO05D008946 2.1e-65 253.1 232 54.7
Eucgr.K03186 Eucalyptus grandis HOM05D007171 ORTHO05D008946 6.1e-65 251.5 237 53.6
CSS0013206 Camellia sinensis var. sinensis HOM05D007171 ORTHO05D008946 1.0e-64 250.8 232 55.2
CSS0034218 Camellia sinensis var. sinensis HOM05D007171 ORTHO05D008946 1.0e-64 250.8 232 55.2
Dinv37232 Davidia involucrata HOM05D007171 ORTHO05D008946 1.1e-61 240.7 233 53.6
Lj2C103T12 Lonicera japonica HOM05D007171 ORTHO05D008946 1.1e-61 240.7 232 52.6
Cfa017468 Carpinus fangiana HOM05D007171 ORTHO05D008946 9.2e-61 237.7 232 53.0
Nn2g10565 Nelumbo nucifera HOM05D007171 ORTHO05D008946 3.5e-60 235.7 232 48.7
Sed0019751 Sechium edule HOM05D007171 ORTHO05D008946 3.5e-60 235.7 231 55.4
Atru.chr8.2508 Acer truncatum HOM05D007171 ORTHO05D008946 1.3e-59 233.8 231 51.5
Gorai.001G248800 Gossypium raimondii HOM05D007171 ORTHO05D008946 2.3e-59 233.0 232 52.2
Hma1.2p1_0350F.1_g132480 Hydrangea macrophylla HOM05D007171 ORTHO05D008946 3.9e-59 232.3 232 52.6
Gohir.A13G095390 Gossypium hirsutum HOM05D007171 ORTHO05D008946 5.0e-59 231.9 232 51.7
Gohir.D13G097200 Gossypium hirsutum HOM05D007171 ORTHO05D008946 5.0e-59 231.9 232 52.2
PGR004G1538 Punica granatum HOM05D007171 ORTHO05D008946 1.1e-58 230.7 209 54.5
QL07p045896 Quercus lobata HOM05D007171 ORTHO05D008946 1.5e-58 230.3 234 50.4
MD04G1110400 Malus domestica HOM05D007171 ORTHO05D008946 5.6e-58 228.4 234 50.9
Thecc.05G049600 Theobroma cacao HOM05D007171 ORTHO05D008946 9.5e-58 227.6 234 50.4
Migut.L01644 Erythranthe guttata HOM05D007171 ORTHO05D008946 2.1e-57 226.5 228 50.9
MELO3C003081.2 Cucumis melo HOM05D007171 ORTHO05D008946 8.0e-57 224.6 231 50.6
Prupe.6G245500 Prunus persica HOM05D007171 ORTHO05D008946 5.2e-56 221.9 252 46.0
Cc06_g03280 Coffea canephora HOM05D007171 ORTHO05D008946 6.8e-56 221.5 232 50.4
Peaxi162Scf00039g00419 Petunia axillaris HOM05D007171 ORTHO05D008946 3.4e-55 219.2 235 48.5
ATR0594G074 Amborella trichopoda HOM05D007171 ORTHO05D008946 2.2e-54 216.5 233 47.2
RcHm_v2.0_Chr3g0468061 Rosa chinensis HOM05D007171 ORTHO05D008946 8.3e-54 214.5 236 47.9
Lalb_Chr21g0317461 Lupinus albus HOM05D007171 ORTHO05D008946 1.4e-53 213.8 232 47.0
HanXRQChr13g0399321 Helianthus annuus HOM05D007171 ORTHO05D008946 3.2e-53 212.6 233 49.8
CANSAT80G0026 Cannabis sativa HOM05D007171 ORTHO05D008946 4.1e-53 212.2 222 49.5
FvH4_6g14830 Fragaria vesca HOM05D007171 ORTHO05D008946 4.1e-53 212.2 238 47.5
THA.LOC104826994 Tarenaya hassleriana HOM05D007171 ORTHO05D008946 4.1e-53 212.2 238 49.2
CsaV3_4G024490 Cucumis sativus L. HOM05D007171 ORTHO05D008946 7.0e-53 211.5 231 48.5
FAN14G2678 Fragaria x ananassa HOM05D007171 ORTHO05D008946 2.7e-52 209.5 238 47.1
SalBow4G3339 Salvia bowleyana HOM05D007171 ORTHO05D008946 4.6e-52 208.8 224 48.2
FAN09G2349 Fragaria x ananassa HOM05D007171 ORTHO05D008946 1.3e-51 207.2 238 46.2
Nitab4.5_0002774g0040 Nicotiana tabacum HOM05D007171 ORTHO05D008946 1.3e-51 207.2 185 53.0
FAN05G0875 Fragaria x ananassa HOM05D007171 ORTHO05D008946 1.7e-51 206.8 237 46.8
Lj2g0011641 Lotus japonicus HOM05D007171 ORTHO05D008946 5.0e-51 205.3 199 49.2
MSTRG.10286 Avicennia marina HOM05D007171 ORTHO05D008946 4.3e-50 202.2 233 45.9
arahy.Tifrunner.gnm1.ann1.J666ZG Arachis hypogaea HOM05D007171 ORTHO05D008946 5.6e-50 201.8 222 45.5
FAN02G0958 Fragaria x ananassa HOM05D007171 ORTHO05D008946 7.3e-50 201.4 238 45.8
Medtr6g023885 Medicago truncatula HOM05D007171 ORTHO05D008946 9.5e-50 201.1 223 44.4
arahy.Tifrunner.gnm1.ann1.56UX32 Arachis hypogaea HOM05D007171 ORTHO05D008946 2.8e-49 199.5 222 45.0
Duzib128G0424 Durio zibethinus HOM05D007171 ORTHO05D008946 3.6e-49 199.1 234 47.0
Ca_04434_v3 Cicer arietinum L. HOM05D007171 ORTHO05D008946 4.7e-49 198.7 224 45.5
Nitab4.5_0000643g0130 Nicotiana tabacum HOM05D007171 ORTHO05D008946 4.7e-49 198.7 187 51.9
Aa31LG1G22150 Aethionema arabicum HOM05D007171 ORTHO05D008946 8.0e-49 198.0 243 46.9
CAN.G350.19 Capsicum annuum HOM05D007171 ORTHO05D008946 8.0e-49 198.0 184 51.1
VMungo0464G1509 Vigna mungo HOM05D007171 ORTHO05D008946 1.1e-48 197.6 227 47.6
Sopen09g001790 Solanum pennellii HOM05D007171 ORTHO05D008946 2.3e-48 196.4 235 43.4
Solyc09g005930.4 Solanum lycopersicum HOM05D007171 ORTHO05D008946 3.1e-48 196.1 235 43.4
PGSC0003DMG400023935 Solanum tuberosum HOM05D007171 ORTHO05D008946 5.2e-48 195.3 235 43.4
EL10Ac7g17274 Beta vulgaris HOM05D007171 ORTHO05D008946 8.9e-48 194.5 223 47.1
Phvul.004G054300 Phaseolus vulgaris HOM05D007171 ORTHO05D008946 8.9e-48 194.5 204 47.5
BraA10t45334Z Brassica rapa HOM05D007171 ORTHO05D008946 9.8e-47 191.0 239 44.8
Thhalv10014568m.g Eutrema salsugineum HOM05D007171 ORTHO05D008946 9.8e-47 191.0 239 43.9
BolC9t60129H Brassica oleracea HOM05D007171 ORTHO05D008946 2.2e-46 189.9 240 45.4
SHI12609 Sapria himalayana HOM05D007171 ORTHO05D008946 4.9e-46 188.7 269 40.1
BcaC06g32009 Brassica carinata HOM05D007171 ORTHO05D008946 1.9e-45 186.8 238 44.5
A10p32970 Brassica napus HOM05D007171 ORTHO05D008946 2.4e-45 186.4 239 43.1
MBI14_g46135_MAGBIO Magnolia biondii HOM05D007171 ORTHO05D008946 2.4e-45 186.4 325 37.2
AUR62036841 Chenopodium quinoa HOM05D007171 ORTHO05D008946 3.2e-45 186.0 223 44.4
Haze_20689 Corylus avellana HOM05D007171 ORTHO05D008946 5.4e-45 185.3 200 48.5
TPR.G16189 Trifolium pratense HOM05D007171 ORTHO05D008946 5.4e-45 185.3 224 43.8
BcaNung03278 Brassica carinata HOM05D007171 ORTHO05D008946 9.2e-45 184.5 238 43.7
Glyma.05G078000 Glycine max HOM05D007171 ORTHO05D008946 2.7e-44 183.0 205 44.9
AT5G02740 Arabidopsis thaliana HOM05D007171 ORTHO05D008946 3.5e-44 182.6 236 45.8
AUR62042289 Chenopodium quinoa HOM05D007171 ORTHO05D008946 4.6e-44 182.2 223 43.9
DCAR_017747 Daucus carota HOM05D007171 ORTHO05D008946 1.0e-43 181.0 230 41.3
C09p73940 Brassica napus HOM05D007171 ORTHO05D008946 1.3e-43 180.6 239 43.1
Carub.0006s0150 Capsella rubella HOM05D007171 ORTHO05D008946 1.7e-43 180.3 240 45.4
Glyma.19G071700 Glycine max HOM05D007171 ORTHO05D008946 1.7e-43 180.3 189 46.0
ECA233G5714 Erigeron canadensis HOM05D007171 ORTHO05D008946 3.0e-43 179.5 165 53.3
Lsat_1_v5_gn_6_33220 Lactuca sativa HOM05D007171 ORTHO05D008946 3.0e-43 179.5 222 45.0
CDE04G2331 Ceratophyllum demersum HOM05D007171 ORTHO05D008946 7.3e-42 174.9 195 44.6
Potri.006G215800 Populus trichocarpa HOM05D007171 ORTHO05D008946 7.3e-42 174.9 258 41.5
PSO339G0903 Papaver somniferum HOM05D007171 ORTHO05D008946 1.2e-41 174.1 185 46.5
PSO384G3756 Papaver somniferum HOM05D007171 ORTHO05D008946 1.2e-41 174.1 237 41.4
SGA_v2.0_scaffold94G28650 Striga asiatica HOM05D007171 ORTHO05D008946 2.8e-41 172.9 245 40.0
AL6G11990 Arabidopsis lyrata HOM05D007171 ORTHO05D008946 6.2e-41 171.8 236 42.8
Zm00001eb397290 Zea mays HOM05D007171 ORTHO05D008946 1.1e-40 171.0 188 44.1
unitig_0.g696 Utricularia gibba HOM05D007171 ORTHO05D008946 2.3e-40 169.9 226 38.9
Sc07g0006190 Simmondsia chinensis HOM05D007171 ORTHO05D008946 1.3e-38 164.1 192 43.8
SEGI_11390 Sequoiadendron giganteum HOM05D007171 ORTHO05D008946 2.4e-37 159.8 229 41.5
COL.COLO4_10310 Corchorus olitorius HOM05D007171 ORTHO05D008946 5.1e-35 152.1 231 40.3
Sabra06G0166400 Salix brachista HOM05D007171 ORTHO05D008946 2.5e-34 149.8 195 41.5
Os03g0282900 Oryza sativa ssp. japonica HOM05D007171 ORTHO05D008946 4.3e-34 149.1 208 38.5
vmacro20092 Vaccinium macrocarpon HOM05D007171 ORTHO05D008946 2.1e-28 130.2 153 46.4
Psat1g085840 Pisum sativum HOM05D007171 ORTHO05D008946 8.1e-25 118.2 144 38.9
HPP92_001690 Vanilla planifolia HOM05D007171 ORTHO05D008946 1.4e-24 117.5 122 47.5
CARHR210640 Cardamine hirsuta HOM05D007171 ORTHO05D008946 1.7e-22 110.5 160 40.6
Oeu035685.1 Olea europaea HOM05D007171 ORTHO05D008946 2.9e-22 109.8 83 57.8
TAR383G0190 Trochodendron aralioides HOM05D007171 ORTHO05D008946 4.9e-22 109.0 90 58.9
Aqoxy2G01927 Aquilegia oxysepala HOM05D007171 ORTHO05D008946 5.4e-21 105.5 145 36.6
Ah.08g212060 Amaranthus hybridus HOM05D007171 ORTHO05D008946 2.7e-20 103.2 87 51.7
ClCG04G008670 Citrullus lanatus HOM05D007171 ORTHO05D008946 1.1e-18 97.8 190 34.7
Ah.08g212070 Amaranthus hybridus HOM05D007171 ORTHO05D008946 1.5e-15 87.4 91 51.6
Mapoly0061s0086 Marchantia polymorpha HOM05D007171 ORTHO05D008946 3.4e-15 86.3 200 27.0
Pp3c16_16690 Physcomitrium patens HOM05D007171 ORTHO05D008946 7.1e-13 78.6 191 26.7
MBI14_g16337_MAGBIO Magnolia biondii HOM05D007171 ORTHO05D008946 1.2e-12 77.8 61 59.0
CBR_g5643 Chara braunii HOM05D062952 ORTHO05D008946 2.8e-09 66.6 271 23.6
HanXRQChr13g0399281 Helianthus annuus HOM05D007171 ORTHO05D008946 7.6e-07 58.5 69 43.5


User provided reference genes

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