Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI74G0147 Tripterygium wilfordii HOM05D005682 ORTHO05D007050 0.0e+00 2155.6 1086 100.0
GSVIVG01010197001 Vitis vinifera HOM05D005682 ORTHO05D007050 0.0e+00 1113.2 1106 53.7
Prupe.1G345800 Prunus persica HOM05D005682 ORTHO05D007050 0.0e+00 1112.1 1101 54.8
Haze_11722 Corylus avellana HOM05D005682 ORTHO05D007050 0.0e+00 1105.9 1099 55.4
Potri.007G070400 Populus trichocarpa HOM05D005682 ORTHO05D007050 0.0e+00 1094.0 1111 54.6
CiPaw.05G167300 Carya illinoinensis HOM05D005682 ORTHO05D007050 0.0e+00 1093.6 1116 53.8
Sabra07G0059000 Salix brachista HOM05D005682 ORTHO05D007050 0.0e+00 1087.4 1101 54.7
MD13G1007100 Malus domestica HOM05D005682 ORTHO05D007050 6.4e-306 1054.3 1097 52.1
RcHm_v2.0_Chr4g0446491 Rosa chinensis HOM05D005682 ORTHO05D007050 3.1e-300 1035.4 1111 51.3
Duzib052G0545 Durio zibethinus HOM05D005682 ORTHO05D007050 8.2e-293 1010.7 1111 50.0
CANSAT64G0530 Cannabis sativa HOM05D005682 ORTHO05D007050 6.9e-292 1007.7 1122 50.5
FvH4_4g36771 Fragaria vesca HOM05D005682 ORTHO05D007050 2.0e-291 1006.1 1111 50.4
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 3.4e-291 1005.4 1050 53.5
Duzib132G1218 Durio zibethinus HOM05D005682 ORTHO05D007050 4.5e-291 1005.0 1115 50.9
FAN17G1521 Fragaria x ananassa HOM05D005682 ORTHO05D007050 3.1e-284 982.2 1105 50.3
TAR622G0093 Trochodendron aralioides HOM05D005682 ORTHO05D007050 1.3e-282 976.9 1063 49.8
Gorai.013G070900 Gossypium raimondii HOM05D005682 ORTHO05D007050 5.0e-282 974.9 1111 48.8
Actinidia04079 Actinidia chinensis HOM05D005682 ORTHO05D007050 6.5e-282 974.5 1131 48.5
Gohir.D13G062400 Gossypium hirsutum HOM05D005682 ORTHO05D007050 2.1e-280 969.5 1111 48.8
MELO3C023602.2 Cucumis melo HOM05D005682 ORTHO05D007050 2.7e-280 969.1 1113 49.1
Gohir.A13G059600 Gossypium hirsutum HOM05D005682 ORTHO05D007050 4.6e-280 968.4 1114 48.3
FAN07G1253 Fragaria x ananassa HOM05D005682 ORTHO05D007050 1.3e-277 960.3 1102 49.6
ClCG09G004600 Citrullus lanatus HOM05D005682 ORTHO05D007050 1.4e-276 956.8 1106 49.2
Nn4g24940 Nelumbo nucifera HOM05D005682 ORTHO05D007050 1.9e-273 946.4 1081 48.9
VMungo1127G0377 Vigna mungo HOM05D005682 ORTHO05D007050 1.4e-271 940.3 1106 47.6
Sed0007950 Sechium edule HOM05D005682 ORTHO05D007050 6.7e-271 937.9 1109 48.2
QL03p043857 Quercus lobata HOM05D005682 ORTHO05D007050 2.0e-270 936.4 1445 41.5
Glyma.11G102200 Glycine max HOM05D005682 ORTHO05D007050 1.2e-267 927.2 1115 47.0
Phvul.011G031200 Phaseolus vulgaris HOM05D005682 ORTHO05D007050 3.4e-267 925.6 1107 47.0
Lalb_Chr01g0001491 Lupinus albus HOM05D005682 ORTHO05D007050 8.5e-266 921.0 1107 47.7
Lj6A721G56 Lonicera japonica HOM05D005682 ORTHO05D007050 1.6e-264 916.8 1108 46.8
Rhsim09G0074000 Rhododendron simsii HOM05D005682 ORTHO05D007050 6.1e-264 914.8 1112 46.6
Lj3g0015709 Lotus japonicus HOM05D005682 ORTHO05D007050 8.0e-264 914.4 1096 48.0
PSO063G1542 Papaver somniferum HOM05D005682 ORTHO05D007050 1.0e-263 914.1 1112 45.7
Eucgr.J00855 Eucalyptus grandis HOM05D005682 ORTHO05D007050 6.1e-256 888.3 1060 46.9
PGR044G2237 Punica granatum HOM05D005682 ORTHO05D007050 2.3e-255 886.3 1099 46.4
THA.LOC104826522 Tarenaya hassleriana HOM05D005682 ORTHO05D007050 2.0e-251 873.2 1096 46.3
TPR.G32358 Trifolium pratense HOM05D005682 ORTHO05D007050 1.3e-250 870.5 1078 45.5
Aqoxy2G03805 Aquilegia oxysepala HOM05D005682 ORTHO05D007050 2.2e-250 869.8 1081 45.6
DCAR_002567 Daucus carota HOM05D005682 ORTHO05D007050 7.2e-249 864.8 1101 44.9
CsaV3_7G030540 Cucumis sativus L. HOM05D005682 ORTHO05D007050 2.1e-248 863.2 1015 48.5
Ciclev10030666m.g Citrus clementina HOM05D005682 ORTHO05D007050 1.7e-245 853.6 896 52.6
Medtr4g074610 Medicago truncatula HOM05D005682 ORTHO05D007050 1.7e-242 843.6 1082 44.3
Oeu033538.1 Olea europaea HOM05D005682 ORTHO05D007050 1.7e-242 843.6 1106 45.7
PSO782G3049 Papaver somniferum HOM05D005682 ORTHO05D007050 1.9e-241 840.1 1057 44.6
HanXRQChr17g0540811 Helianthus annuus HOM05D005682 ORTHO05D007050 1.4e-239 833.9 1096 43.3
MSTRG.433 Avicennia marina HOM05D005682 ORTHO05D007050 2.0e-238 830.1 1104 44.7
ECA246G2025 Erigeron canadensis HOM05D005682 ORTHO05D007050 1.3e-237 827.4 1085 43.7
vmacro10900 Vaccinium macrocarpon HOM05D005682 ORTHO05D007050 4.9e-237 825.5 1176 42.8
Thecc.02G161600 Theobroma cacao HOM05D005682 ORTHO05D007050 1.1e-236 824.3 890 51.0
Ca_03025_v3 Cicer arietinum L. HOM05D005682 ORTHO05D007050 1.2e-235 820.8 1043 44.4
BraA05t21829Z Brassica rapa HOM05D005682 ORTHO05D007050 3.8e-234 815.8 1115 44.3
Cfa008712 Carpinus fangiana HOM05D005682 ORTHO05D007050 1.2e-232 810.8 837 55.3
BcaB06g26047 Brassica carinata HOM05D005682 ORTHO05D007050 1.6e-232 810.4 1112 44.4
Manes.11G108701 Manihot esculenta HOM05D005682 ORTHO05D007050 2.1e-232 810.1 892 50.1
AL3G33230 Arabidopsis lyrata HOM05D005682 ORTHO05D007050 2.3e-231 806.6 1107 43.9
Migut.L00859 Erythranthe guttata HOM05D005682 ORTHO05D007050 3.4e-230 802.7 1113 44.2
BolC5t33225H Brassica oleracea HOM05D005682 ORTHO05D007050 4.4e-230 802.4 1122 44.4
Carub.0003s1966 Capsella rubella HOM05D005682 ORTHO05D007050 1.7e-229 800.4 1104 43.9
ATR0618G435 Amborella trichopoda HOM05D005682 ORTHO05D000625 1.4e-228 797.3 1158 40.8
Lsat_1_v5_gn_3_33580 Lactuca sativa HOM05D005682 ORTHO05D007050 7.0e-228 795.0 1099 43.1
Thhalv10019965m.g Eutrema salsugineum HOM05D005682 ORTHO05D007050 1.7e-226 790.4 1111 42.6
AT3G19780 Arabidopsis thaliana HOM05D005682 ORTHO05D007050 8.6e-226 788.1 1105 43.2
Aa31LG8G6560 Aethionema arabicum HOM05D005682 ORTHO05D007050 3.4e-222 776.2 1093 42.6
Sp3g17800 Schrenkiella parvula HOM05D005682 ORTHO05D007050 2.9e-221 773.1 1103 42.5
BcaC05g28416 Brassica carinata HOM05D005682 ORTHO05D007050 5.6e-217 758.8 1120 43.0
Sc06g0007890 Simmondsia chinensis HOM05D005682 ORTHO05D007050 1.5e-209 734.2 1126 40.3
SalBow2G1379 Salvia bowleyana HOM05D005682 ORTHO05D007050 4.3e-209 732.6 1191 39.6
Ah.14g085910 Amaranthus hybridus HOM05D005682 ORTHO05D007050 3.6e-208 729.6 1106 40.6
Hund13152 Selenicereus undatus HOM05D005682 ORTHO05D007050 4.4e-206 722.6 1042 41.7
EL10Ac9g20684 Beta vulgaris HOM05D005682 ORTHO05D007050 2.3e-202 710.3 1051 40.2
arahy.Tifrunner.gnm1.ann1.3I7IYH Arachis hypogaea HOM05D005682 ORTHO05D007050 6.9e-199 698.7 930 44.8
AUR62018178 Chenopodium quinoa HOM05D005682 ORTHO05D007050 2.9e-197 693.3 1202 37.9
Peaxi162Scf00363g00730 Petunia axillaris HOM05D005682 ORTHO05D007050 1.3e-194 684.5 932 42.5
Sopen02g009170 Solanum pennellii HOM05D005682 ORTHO05D007050 6.0e-187 659.1 953 41.1
arahy.Tifrunner.gnm1.ann1.H4B4B0 Arachis hypogaea HOM05D005682 ORTHO05D007050 1.3e-186 657.9 765 48.2
AUR62038663 Chenopodium quinoa HOM05D005682 ORTHO05D007050 3.1e-183 646.7 1076 39.1
C05p45010 Brassica napus HOM05D005682 ORTHO05D007050 1.8e-175 620.9 892 42.6
A05p29780 Brassica napus HOM05D005682 ORTHO05D007050 3.8e-173 613.2 887 42.1
Dinv11710 Davidia involucrata HOM05D005682 ORTHO05D007050 1.2e-166 591.7 495 59.4
Psat7g173480 Pisum sativum HOM05D005682 ORTHO05D007050 1.2e-166 591.7 801 43.7
Zm00001eb221340 Zea mays HOM05D005682 ORTHO05D007050 2.3e-162 577.4 1231 32.3
Nitab4.5_0000139g0140 Nicotiana tabacum HOM05D005682 ORTHO05D007050 2.9e-157 560.5 804 42.3
Cc11_g00090 Coffea canephora HOM05D005682 ORTHO05D007050 4.7e-155 553.1 791 43.6
CAN.G157.16 Capsicum annuum HOM05D005682 ORTHO05D007050 1.6e-147 528.1 848 39.3
unitig_699.g19973 Utricularia gibba HOM05D005682 ORTHO05D007050 5.7e-145 519.6 1070 34.1
Atru.chr11.1182 Acer truncatum HOM05D005682 ORTHO05D007050 3.8e-141 506.9 602 50.3
CARHR095300 Cardamine hirsuta HOM05D005682 ORTHO05D007050 4.2e-140 503.4 755 42.6
Dinv11711 Davidia involucrata HOM05D005682 ORTHO05D007050 8.8e-138 495.7 492 54.3
Hma1.2p1_0499F.1_g166820 Hydrangea macrophylla HOM05D005682 ORTHO05D007050 1.2e-137 495.4 477 53.2
SEGI_38899 Sequoiadendron giganteum HOM05D005682 ORTHO05D007050 1.6e-131 474.9 1266 29.0
COL.COLO4_08120 Corchorus olitorius HOM05D005682 ORTHO05D007050 1.5e-124 451.8 775 38.2
Solyc02g055460.3 Solanum lycopersicum HOM05D005682 ORTHO05D007050 1.3e-117 428.7 707 37.9
BraA05t21816Z Brassica rapa HOM05D005682 ORTHO05D007050 6.0e-110 403.3 625 41.9
CDE04G1407 Ceratophyllum demersum HOM05D005682 ORTHO05D007050 2.3e-109 401.4 729 36.9
HPP92_008567 Vanilla planifolia HOM05D005682 ORTHO05D007050 2.4e-103 381.3 491 42.6
BcaC05g28417 Brassica carinata HOM05D005682 ORTHO05D007050 1.6e-102 378.6 469 45.4
AagrBONN_evm.TU.Sc2ySwM_340.174 Anthoceros agrestis HOM05D005682 ORTHO05D007050 7.3e-100 369.8 1172 27.9
HPP92_008562 Vanilla planifolia HOM05D005682 ORTHO05D007050 4.7e-99 367.1 764 33.8
Os10g0485100 Oryza sativa ssp. japonica HOM05D005682 ORTHO05D007050 1.9e-95 355.1 591 36.9
SHI13893 Sapria himalayana HOM05D005682 ORTHO05D007050 1.4e-82 312.4 508 39.8
BcaC05g28407 Brassica carinata HOM05D005682 ORTHO05D007050 5.3e-82 310.5 395 44.8
CSS0031646 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 6.4e-80 303.5 350 52.3
Nitab4.5_0028170g0010 Nicotiana tabacum HOM05D005682 ORTHO05D007050 1.2e-78 299.3 484 41.5
CSS0028316 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 6.0e-78 297.0 275 53.5
CARHR095290 Cardamine hirsuta HOM05D005682 ORTHO05D007050 5.8e-73 280.4 347 46.4
CAN.G157.17 Capsicum annuum HOM05D005682 ORTHO05D007050 1.5e-60 239.2 248 48.4
SHI13894 Sapria himalayana HOM05D005682 ORTHO05D007050 1.2e-57 229.6 306 41.2
CDE04G1313 Ceratophyllum demersum HOM05D005682 ORTHO05D007050 5.0e-56 224.2 288 43.1
COL.COLO4_08119 Corchorus olitorius HOM05D005682 ORTHO05D007050 3.5e-54 218.0 198 57.6
Pp3c7_6630 Physcomitrium patens HOM05D005682 ORTHO05D007050 7.9e-54 216.9 1061 24.2
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 1.5e-52 212.6 974 24.8
Cc11_g04390 Coffea canephora HOM05D005682 ORTHO05D007050 2.5e-52 211.8 267 43.4
Cc11_g00100 Coffea canephora HOM05D005682 ORTHO05D007050 3.7e-51 208.0 198 51.0
A05p29790 Brassica napus HOM05D005682 ORTHO05D007050 8.2e-51 206.8 217 53.9
Solyc02g055470.2 Solanum lycopersicum HOM05D005682 ORTHO05D007050 2.4e-50 205.3 186 54.8
Sopen02g009200 Solanum pennellii HOM05D005682 ORTHO05D007050 6.9e-50 203.8 193 53.4
Nitab4.5_0002392g0030 Nicotiana tabacum HOM05D005682 ORTHO05D007050 9.0e-50 203.4 200 51.0
CSS0001307 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 6.5e-48 197.2 187 53.5
SHI13892 Sapria himalayana HOM05D005682 ORTHO05D007050 9.1e-42 176.8 186 50.5
Nitab4.5_0002392g0020 Nicotiana tabacum HOM05D005682 ORTHO05D007050 8.2e-35 153.7 192 42.2
Nitab4.5_0000139g0150 Nicotiana tabacum HOM05D005682 ORTHO05D007050 4.1e-34 151.4 135 55.6
CSS0026201 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 8.2e-27 127.1 129 49.6
C05p44920 Brassica napus HOM05D005682 ORTHO05D007050 1.0e-24 120.2 185 36.2
Peaxi162Scf00363g00073 Petunia axillaris HOM05D005682 ORTHO05D007050 3.8e-24 118.2 116 52.6
Psat4g043640 Pisum sativum HOM05D005682 ORTHO05D007050 2.2e-16 92.4 113 42.5
BcaC05g28408 Brassica carinata HOM05D005682 ORTHO05D007050 1.9e-15 89.4 116 42.2
CBR_g66815 Chara braunii HOM05D005682 ORTHO05D007050 2.3e-13 82.4 138 29.0
Aqoxy2G03797 Aquilegia oxysepala HOM05D005682 ORTHO05D007050 1.5e-12 79.7 107 40.2
FvH4_6g37553 Fragaria vesca HOM05D005682 ORTHO05D007050 3.1e-10 72.0 61 59.0
HPP92_008566 Vanilla planifolia HOM05D005682 ORTHO05D007050 4.1e-10 71.6 175 32.6
FvH4_4g15932 Fragaria vesca HOM05D005682 ORTHO05D007050 5.4e-10 71.2 111 42.3
Mapoly0072s0055 Marchantia polymorpha HOM05D002497 ORTHO05D002697 1.6e-09 69.7 147 34.0
SMO356G0763 Selaginella moellendorffii HOM05D000847 ORTHO05D002691 3.5e-09 68.6 237 27.0
SEGI_17937 Sequoiadendron giganteum HOM05D002497 ORTHO05D002697 7.7e-09 67.4 153 33.3
HanXRQChr09g0264091 Helianthus annuus HOM05D002497 ORTHO05D002697 5.6e-07 61.2 163 30.7
Medtr7g011850 Medicago truncatula HOM05D002497 ORTHO05D002697 5.6e-07 61.2 149 29.5
Manes.02G050400 Manihot esculenta HOM05D002497 ORTHO05D002697 2.1e-06 59.3 154 30.5
CDE08G0240 Ceratophyllum demersum HOM05D000847 ORTHO05D003278 4.7e-06 58.2 162 27.8


User provided reference genes

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