Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1492.6 748 100.0
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1431.8 748 95.2
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1312.7 748 86.2
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1300.4 749 86.0
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 0.0e+00 1298.9 749 86.2
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1296.2 748 85.3
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 0.0e+00 1295.0 749 85.7
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 0.0e+00 1294.6 749 85.8
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 0.0e+00 1292.7 751 86.0
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1291.6 746 85.4
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 0.0e+00 1288.9 748 85.4
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1287.3 749 84.9
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1285.4 749 85.0
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 0.0e+00 1285.4 749 85.2
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 0.0e+00 1284.2 749 84.5
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1283.5 750 84.4
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1282.7 748 84.5
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1280.4 748 84.4
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1277.3 750 83.6
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1276.5 751 85.4
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 0.0e+00 1273.5 749 84.1
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 0.0e+00 1273.5 749 83.3
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 0.0e+00 1273.1 751 83.6
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 0.0e+00 1272.3 749 83.8
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1272.3 750 83.6
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1271.1 750 83.5
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 0.0e+00 1271.1 752 84.2
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1270.4 748 83.7
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1269.6 751 84.2
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 0.0e+00 1269.2 750 84.1
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1269.2 748 83.4
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 0.0e+00 1268.4 751 84.6
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1268.1 746 83.6
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 0.0e+00 1267.7 746 83.8
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1266.1 750 84.7
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1265.8 748 84.2
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 0.0e+00 1265.4 751 83.1
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 0.0e+00 1265.4 748 84.2
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 0.0e+00 1263.4 750 83.7
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 0.0e+00 1261.5 751 84.3
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 0.0e+00 1260.4 749 83.3
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1258.8 750 84.1
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1258.0 748 82.8
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 0.0e+00 1256.9 748 83.0
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 0.0e+00 1256.5 748 83.0
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1256.5 746 83.2
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 0.0e+00 1255.7 760 82.5
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 0.0e+00 1254.6 749 82.9
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 0.0e+00 1254.6 749 82.5
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1254.2 752 82.7
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 0.0e+00 1253.0 747 83.0
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1252.7 750 83.3
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1250.7 749 83.0
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1250.7 747 83.1
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 0.0e+00 1248.8 803 79.2
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 0.0e+00 1248.8 747 82.2
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 0.0e+00 1247.6 748 82.0
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 0.0e+00 1247.3 750 81.7
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1246.9 747 83.3
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1245.7 708 85.5
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 0.0e+00 1245.0 750 82.8
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 0.0e+00 1244.6 747 81.8
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 0.0e+00 1242.3 781 80.5
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1241.9 749 83.4
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 0.0e+00 1241.5 749 83.0
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 0.0e+00 1240.3 749 82.2
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1235.7 843 75.2
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 0.0e+00 1235.3 750 82.1
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1234.2 750 82.0
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1233.0 758 81.4
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1228.8 758 81.0
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1228.8 748 81.8
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1227.2 750 80.8
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 0.0e+00 1225.3 749 81.0
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1224.5 750 80.7
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 0.0e+00 1222.6 748 80.6
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 0.0e+00 1222.6 749 81.4
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 0.0e+00 1220.3 749 80.2
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1219.5 749 80.6
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1219.1 750 80.3
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1218.0 750 80.3
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 0.0e+00 1217.6 750 80.1
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1216.8 750 80.1
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 0.0e+00 1216.4 750 80.5
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 0.0e+00 1214.9 753 80.9
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1213.7 750 80.0
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 0.0e+00 1213.7 750 80.0
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1210.7 755 79.9
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1210.3 749 80.2
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 0.0e+00 1209.9 749 79.2
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1208.7 748 79.5
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1206.4 743 80.5
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 0.0e+00 1206.0 699 84.3
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 0.0e+00 1200.3 728 80.6
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1199.1 752 80.9
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1199.1 751 79.2
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1198.7 742 79.5
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1198.7 731 80.4
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1198.3 782 76.6
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1195.3 748 78.7
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1194.5 751 78.2
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 0.0e+00 1188.3 744 78.9
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1183.7 748 79.3
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1179.5 718 80.4
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 0.0e+00 1174.8 658 86.9
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1161.4 658 85.9
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1158.7 658 85.6
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 0.0e+00 1156.7 749 78.0
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1142.1 749 76.9
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 0.0e+00 1140.6 773 74.1
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1137.5 666 84.2
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1130.5 753 75.2
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 0.0e+00 1119.0 658 84.3
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 0.0e+00 1114.4 751 76.3
CDE05G1041 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1103.2 736 74.5
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 0.0e+00 1096.3 1058 57.5
Nn4g24447 Nelumbo nucifera HOM05D003263 ORTHO05D004801 0.0e+00 1077.8 624 85.7
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 1.6e-303 1045.8 751 72.8
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 2.6e-290 1001.9 677 70.6
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 2.4e-283 978.8 676 70.7
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 2.4e-283 978.8 676 70.7
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 3.1e-283 978.4 683 69.5
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 1.2e-282 976.5 684 69.4
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 2.0e-282 975.7 676 70.4
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 5.8e-282 974.2 681 68.7
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 1.5e-261 906.4 598 76.3
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 5.9e-258 894.4 598 75.8
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 3.4e-250 868.6 679 61.9
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 4.1e-235 818.5 679 58.6
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 3.6e-223 778.9 710 56.5
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 3.0e-214 749.2 676 57.0
TAR371G0371 Trochodendron aralioides HOM05D003263 ORTHO05D004801 6.4e-212 741.5 676 62.0
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 1.2e-197 694.1 753 49.5
Haze_26802 Corylus avellana HOM05D003263 ORTHO05D004801 2.4e-174 616.7 746 46.8
arahy.Tifrunner.gnm1.ann1.HY7M04 Arachis hypogaea HOM05D000164 ORTHO05D004801 1.8e-166 590.5 361 78.7
SpUN1596_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 4.5e-157 559.3 305 86.9
Oeu062704.1 Olea europaea HOM05D003263 ORTHO05D004801 1.3e-156 557.8 327 86.2
Thecc.K0008100 Theobroma cacao HOM05D003263 ORTHO05D004801 1.0e-140 505.0 303 84.2
arahy.Tifrunner.gnm1.ann1.Z93KCA Arachis hypogaea HOM05D003263 ORTHO05D004801 6.9e-134 482.3 301 80.7
Oeu062706.1 Olea europaea HOM05D003263 ORTHO05D004801 2.6e-128 463.8 309 74.8
SpUn1854_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 1.2e-117 428.3 294 70.7
Potri.017G136950 Populus trichocarpa HOM05D003263 ORTHO05D004801 4.7e-114 416.4 236 85.2
Sabra17G0054900 Salix brachista HOM05D003263 ORTHO05D004801 2.0e-101 374.4 241 77.6
Thecc.K0008200 Theobroma cacao HOM05D003263 ORTHO05D004801 3.0e-97 360.5 219 81.7
CSS0049015 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 1.2e-96 358.6 303 64.0
CSS0039899 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 5.4e-94 349.7 303 62.4
Eucgr.J01637 Eucalyptus grandis HOM05D003263 ORTHO05D004801 2.2e-87 327.8 225 76.0
Oeu039332.1 Olea europaea HOM05D003263 ORTHO05D004801 4.3e-75 287.0 172 80.2
Haze_27240 Corylus avellana HOM05D003263 ORTHO05D004801 3.3e-67 260.8 366 40.7
arahy.Tifrunner.gnm1.ann1.VKQW11 Arachis hypogaea HOM05D003263 ORTHO05D004801 3.6e-66 257.3 126 96.8
Actinidia28797 Actinidia chinensis HOM05D003263 ORTHO05D004801 1.5e-64 251.9 395 44.6
SEGI_21193 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 1.3e-63 248.8 174 71.3
MD16G1264300 Malus domestica HOM05D003263 ORTHO05D004801 2.4e-62 244.6 260 53.5
arahy.Tifrunner.gnm1.ann1.SN393R Arachis hypogaea HOM05D003263 ORTHO05D004801 4.3e-59 233.8 114 96.5
HanXRQChr17g0559491 Helianthus annuus HOM05D003263 ORTHO05D004801 4.9e-47 193.7 142 73.2
SEGI_05320 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 6.0e-45 186.8 146 67.1
SEGI_04560 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 6.2e-42 176.8 173 56.6
Sabra17G0112400 Salix brachista HOM05D003263 ORTHO05D003497 1.5e-40 172.2 122 70.5
VMungo0647G1524 Vigna mungo HOM05D003263 ORTHO05D004801 1.5e-40 172.2 104 73.1
QL04p097132 Quercus lobata HOM05D003263 ORTHO05D000041 5.7e-35 153.7 86 82.6
CBR_g44347 Chara braunii HOM05D003263 ORTHO05D004801 5.0e-31 140.6 142 49.3
Migut.M00197 Erythranthe guttata HOM05D003263 ORTHO05D004801 9.4e-30 136.3 137 58.4
Ca_19082_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 1.2e-29 136.0 83 79.5
Hund13091 Selenicereus undatus HOM05D003263 ORTHO05D004801 4.6e-29 134.0 105 62.9
Cc04_g05630 Coffea canephora HOM05D003263 ORTHO05D004801 2.8e-26 124.8 141 53.9
MD16G1264400 Malus domestica HOM05D003263 ORTHO05D004801 1.8e-25 122.1 61 88.5
Hma1.2p1_1425F.1_g282850 Hydrangea macrophylla HOM05D003263 ORTHO05D004801 5.3e-25 120.6 99 65.7
CSS0022568 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 3.4e-24 117.9 142 54.9
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 1.7e-23 115.5 221 31.2
TPR.G18971 Trifolium pratense HOM05D003263 ORTHO05D004801 4.5e-16 90.9 56 78.6
QL08p053439 Quercus lobata HOM05D003263 ORTHO05D004801 5.0e-15 87.4 50 76.0
SEGI_40032 Sequoiadendron giganteum HOM05D003263 ORTHO05D024792 1.1e-11 76.3 42 85.7
TPR.G11234 Trifolium pratense HOM05D003263 ORTHO05D004801 1.5e-11 75.9 42 88.1
Cc00_g06720 Coffea canephora HOM05D003263 ORTHO05D004801 3.7e-10 71.2 38 89.5
Psat2g105960 Pisum sativum HOM05D000610 ORTHO05D037361 7.2e-06 57.0 32 75.0


User provided reference genes

Program Settings