Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI73G1192 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 3.6e-98 361.7 197 100.0
TWI53G1241 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 1.5e-64 250.0 168 75.6
CANSAT78G0904 Cannabis sativa HOM05D004153 ORTHO05D004678 5.5e-46 188.3 166 57.2
RcHm_v2.0_Chr4g0422241 Rosa chinensis HOM05D004153 ORTHO05D004678 5.5e-46 188.3 159 56.0
Ciclev10007035m.g Citrus clementina HOM05D004153 ORTHO05D004678 6.0e-45 184.9 165 58.2
Glyma.15G147800 Glycine max HOM05D004153 ORTHO05D004678 6.0e-45 184.9 155 58.7
Thecc.04G284700 Theobroma cacao HOM05D004153 ORTHO05D004678 1.8e-44 183.3 155 58.7
TPR.G13834 Trifolium pratense HOM05D004153 ORTHO05D004678 3.9e-44 182.2 162 56.8
Duzib052G0234 Durio zibethinus HOM05D004153 ORTHO05D004678 8.7e-44 181.0 157 58.6
Lj6g0000547 Lotus japonicus HOM05D004153 ORTHO05D004678 1.1e-43 180.6 150 59.3
Lalb_Chr18g0051691 Lupinus albus HOM05D004153 ORTHO05D004678 1.9e-43 179.9 159 57.9
Psat1g153880 Pisum sativum HOM05D004153 ORTHO05D004678 3.3e-43 179.1 162 57.4
Glyma.09G044900 Glycine max HOM05D004153 ORTHO05D004678 4.3e-43 178.7 163 55.2
Atru.chr4.2837 Acer truncatum HOM05D004153 ORTHO05D004678 7.4e-43 177.9 153 59.5
Haze_01203 Corylus avellana HOM05D004153 ORTHO05D004678 7.4e-43 177.9 156 59.0
FAN07G0961 Fragaria x ananassa HOM05D004153 ORTHO05D004678 7.4e-43 177.9 155 56.8
Lj3P816T18 Lonicera japonica HOM05D004153 ORTHO05D004678 2.8e-42 176.0 143 59.4
Phvul.009G248000 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 6.2e-42 174.9 162 53.7
VMungo1309G0390 Vigna mungo HOM05D004153 ORTHO05D004678 9.0e-41 171.0 162 51.9
Lj3P819T20 Lonicera japonica HOM05D004153 ORTHO05D004678 3.4e-40 169.1 118 66.1
Gohir.A10G164100 Gossypium hirsutum HOM05D004153 ORTHO05D004678 7.6e-40 167.9 150 54.7
Gorai.011G190200 Gossypium raimondii HOM05D004153 ORTHO05D004678 1.7e-39 166.8 150 54.0
Gohir.D10G170400 Gossypium hirsutum HOM05D004153 ORTHO05D004678 2.2e-39 166.4 166 52.4
Medtr2g436790 Medicago truncatula HOM05D004153 ORTHO05D004678 2.2e-39 166.4 162 58.0
Prupe.1G136800 Prunus persica HOM05D004153 ORTHO05D004678 1.4e-38 163.7 138 54.3
Duzib138G0244 Durio zibethinus HOM05D004153 ORTHO05D004678 5.5e-38 161.8 155 49.0
PGR031G1230 Punica granatum HOM05D004153 ORTHO05D004678 7.1e-38 161.4 166 51.2
Eucgr.B01312 Eucalyptus grandis HOM05D004153 ORTHO05D004678 1.2e-37 160.6 158 50.0
EL10Ac3g06596 Beta vulgaris HOM05D004153 ORTHO05D004678 3.5e-37 159.1 159 46.5
Potri.010G025200 Populus trichocarpa HOM05D004153 ORTHO05D004678 7.9e-37 157.9 160 51.2
Sed0018454 Sechium edule HOM05D004153 ORTHO05D004678 1.3e-36 157.1 156 50.6
COL.COLO4_23373 Corchorus olitorius HOM05D004153 ORTHO05D004678 1.8e-36 156.8 152 46.7
CsaV3_3G014620 Cucumis sativus L. HOM05D004153 ORTHO05D004678 5.1e-36 155.2 162 50.6
Manes.03G195100 Manihot esculenta HOM05D004153 ORTHO05D004678 1.1e-35 154.1 119 61.3
TWI23G0022 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 2.5e-35 152.9 161 47.8
MELO3C006663.2 Cucumis melo HOM05D004153 ORTHO05D004678 4.3e-35 152.1 162 49.4
Solyc09g074910.1 Solanum lycopersicum HOM05D004153 ORTHO05D004678 8.2e-34 147.9 150 47.3
CAN.G339.31 Capsicum annuum HOM05D004153 ORTHO05D004678 1.4e-33 147.1 150 47.3
Sopen09g029730 Solanum pennellii HOM05D004153 ORTHO05D004678 1.4e-33 147.1 150 47.3
TAR365G1014 Trochodendron aralioides HOM05D004153 ORTHO05D004678 2.4e-33 146.4 120 54.2
Nitab4.5_0000619g0070 Nicotiana tabacum HOM05D004153 ORTHO05D004678 6.9e-33 144.8 152 45.4
Nitab4.5_0003901g0020 Nicotiana tabacum HOM05D004153 ORTHO05D004678 6.9e-33 144.8 152 45.4
PGSC0003DMG400035200 Solanum tuberosum HOM05D004153 ORTHO05D004678 6.9e-33 144.8 141 48.2
Aqoxy2G02983 Aquilegia oxysepala HOM05D004153 ORTHO05D004678 2.6e-32 142.9 167 42.5
Gohir.D12G011200 Gossypium hirsutum HOM05D004153 ORTHO05D004678 7.7e-32 141.4 160 44.4
Gorai.008G011200 Gossypium raimondii HOM05D004153 ORTHO05D004678 7.7e-32 141.4 160 44.4
Manes.05G063900 Manihot esculenta HOM05D004153 ORTHO05D004678 7.7e-32 141.4 164 42.1
Migut.D00197 Erythranthe guttata HOM05D004153 ORTHO05D004678 1.0e-31 141.0 150 44.7
MD03G1285300 Malus domestica HOM05D004153 ORTHO05D004678 1.0e-31 141.0 162 43.8
QL12p027168 Quercus lobata HOM05D004153 ORTHO05D004678 2.9e-31 139.4 159 43.4
Rhsim04G0221600 Rhododendron simsii HOM05D004153 ORTHO05D004678 2.9e-31 139.4 118 56.8
Sed0010104 Sechium edule HOM05D004153 ORTHO05D004678 2.9e-31 139.4 148 46.6
Manes.04G056100 Manihot esculenta HOM05D004153 ORTHO05D004678 3.8e-31 139.0 157 41.4
THA.LOC104802169 Tarenaya hassleriana HOM05D004153 ORTHO05D004678 3.8e-31 139.0 157 45.2
Oeu030970.1 Olea europaea HOM05D004153 ORTHO05D004678 5.0e-31 138.7 162 42.0
Peaxi162Scf00067g00254 Petunia axillaris HOM05D004153 ORTHO05D004678 8.5e-31 137.9 152 43.4
Thecc.01G297300 Theobroma cacao HOM05D004153 ORTHO05D004678 8.5e-31 137.9 152 51.3
Nn5g27910 Nelumbo nucifera HOM05D004153 ORTHO05D004678 1.1e-30 137.5 160 42.5
Cc01_g20660 Coffea canephora HOM05D004153 ORTHO05D004678 1.4e-30 137.1 159 42.8
Atru.chr5.1180 Acer truncatum HOM05D004153 ORTHO05D004678 1.9e-30 136.7 145 44.1
Sc13g0003480 Simmondsia chinensis HOM05D004153 ORTHO05D004678 1.9e-30 136.7 144 47.9
Gohir.A12G010800 Gossypium hirsutum HOM05D004153 ORTHO05D004678 2.5e-30 136.3 160 43.8
SalBow3G0249 Salvia bowleyana HOM05D004153 ORTHO05D004678 3.2e-30 136.0 147 42.9
Hma1.2p1_0209F.1_g088580 Hydrangea macrophylla HOM05D004153 ORTHO05D004678 4.2e-30 135.6 145 42.8
Prupe.8G258500 Prunus persica HOM05D004153 ORTHO05D004678 5.5e-30 135.2 145 42.8
RcHm_v2.0_Chr6g0293581 Rosa chinensis HOM05D004153 ORTHO05D004678 5.5e-30 135.2 145 46.9
Cfa005949 Carpinus fangiana HOM05D004153 ORTHO05D004678 7.2e-30 134.8 119 51.3
Haze_04898 Corylus avellana HOM05D004153 ORTHO05D004678 7.2e-30 134.8 145 49.7
PSO017G2667 Papaver somniferum HOM05D004153 ORTHO05D004678 9.4e-30 134.4 155 43.2
PSO675G8366 Papaver somniferum HOM05D004153 ORTHO05D004678 1.2e-29 134.0 155 43.2
unitig_0.g1178 Utricularia gibba HOM05D004153 ORTHO05D004678 1.2e-29 134.0 160 41.2
FAN15G0276 Fragaria x ananassa HOM05D004153 ORTHO05D004678 2.7e-29 132.9 159 44.0
FAN15G2246 Fragaria x ananassa HOM05D000802 ORTHO05D001074 4.6e-29 132.1 155 44.5
FAN27G1399 Fragaria x ananassa HOM05D004153 ORTHO05D004678 4.6e-29 132.1 155 44.5
Potri.002G206100 Populus trichocarpa HOM05D004153 ORTHO05D004678 7.9e-29 131.3 163 41.7
Lj1C0T8 Lonicera japonica HOM05D004153 ORTHO05D004678 1.0e-28 131.0 144 45.1
Potri.014G131400 Populus trichocarpa HOM05D004153 ORTHO05D004678 2.3e-28 129.8 164 40.9
FvH4_2g25400 Fragaria vesca HOM05D004153 ORTHO05D004678 3.0e-28 129.4 145 45.5
FAN24G2766 Fragaria x ananassa HOM05D004153 ORTHO05D004678 3.0e-28 129.4 145 45.5
Nn4g25841 Nelumbo nucifera HOM05D004153 ORTHO05D004678 3.0e-28 129.4 160 42.5
Ca_01937_v3 Cicer arietinum L. HOM05D000639 ORTHO05D004019 3.9e-28 129.0 128 50.0
Sabra02G0153200 Salix brachista HOM05D004153 ORTHO05D004678 3.9e-28 129.0 157 40.1
Lsat_1_v5_gn_5_190540 Lactuca sativa HOM05D004153 ORTHO05D004678 6.7e-28 128.3 142 42.3
Sabra10G0013900 Salix brachista HOM05D004153 ORTHO05D004678 8.8e-28 127.9 121 52.1
FAN20G2301 Fragaria x ananassa HOM05D004153 ORTHO05D004678 1.1e-27 127.5 155 43.9
SGA_v2.0_scaffold2G01404 Striga asiatica HOM05D004153 ORTHO05D004678 2.5e-27 126.3 161 42.2
CANSAT01G1893 Cannabis sativa HOM05D004153 ORTHO05D004678 3.3e-27 125.9 145 43.4
CiPaw.07G106600 Carya illinoinensis HOM05D004153 ORTHO05D004678 4.3e-27 125.6 144 43.1
HanXRQChr01g0001291 Helianthus annuus HOM05D004153 ORTHO05D004678 2.8e-26 122.9 137 44.5
EL10Ac6g15659 Beta vulgaris HOM05D004153 ORTHO05D004678 1.1e-25 120.9 147 39.5
Lj1g0005892 Lotus japonicus HOM05D004153 ORTHO05D004678 1.8e-25 120.2 162 38.9
DCAR_002817 Daucus carota HOM05D004153 ORTHO05D004678 4.1e-25 119.0 147 40.1
Cpa.g.sc9.210 Carica papaya HOM05D004153 ORTHO05D004678 5.3e-25 118.6 145 37.2
Carub.0004s3048 Capsella rubella HOM05D004153 ORTHO05D004678 6.9e-25 118.2 151 41.7
Glyma.03G213300 Glycine max HOM05D004153 ORTHO05D004678 1.2e-24 117.5 163 39.3
CSS0027100 Camellia sinensis var. sinensis HOM05D004153 ORTHO05D004678 2.0e-24 116.7 144 38.9
HanXRQChr10g0284631 Helianthus annuus HOM05D004153 ORTHO05D004678 2.0e-24 116.7 154 37.0
ClCG09G006030 Citrullus lanatus HOM05D004153 ORTHO05D004678 2.6e-24 116.3 156 43.6
AUR62033157 Chenopodium quinoa HOM05D004153 ORTHO05D004678 3.4e-24 115.9 169 36.1
AUR62033169 Chenopodium quinoa HOM05D004153 ORTHO05D004678 3.4e-24 115.9 169 36.1
Ah.08g213200 Amaranthus hybridus HOM05D004153 ORTHO05D004678 4.5e-24 115.5 143 37.1
AT2G47770 Arabidopsis thaliana HOM05D004153 ORTHO05D004678 4.5e-24 115.5 151 41.1
arahy.Tifrunner.gnm1.ann1.3INE6D Arachis hypogaea HOM05D004153 ORTHO05D004678 7.7e-24 114.8 151 39.7
PGR119G1654 Punica granatum HOM05D004153 ORTHO05D004678 1.0e-23 114.4 162 40.1
PGR119G2063 Punica granatum HOM05D004153 ORTHO05D004678 1.0e-23 114.4 162 40.1
Phvul.001G205900 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 1.7e-23 113.6 154 40.3
Sed0026977 Sechium edule HOM05D004153 ORTHO05D004678 1.7e-23 113.6 148 41.9
Lalb_Chr15g0078571 Lupinus albus HOM05D004153 ORTHO05D004678 3.8e-23 112.5 116 45.7
AL4G47340 Arabidopsis lyrata HOM05D004153 ORTHO05D004678 5.0e-23 112.1 151 39.7
CARHR143140 Cardamine hirsuta HOM05D004153 ORTHO05D004678 5.0e-23 112.1 148 40.5
BraA04t18942Z Brassica rapa HOM05D004153 ORTHO05D004678 6.5e-23 111.7 150 38.7
C04p72970 Brassica napus HOM05D004153 ORTHO05D004678 1.4e-22 110.5 150 40.0
Ciclev10022120m.g Citrus clementina HOM05D004153 ORTHO05D004678 1.4e-22 110.5 143 39.2
MBI18_g21824_MAGBIO Magnolia biondii HOM05D004153 ORTHO05D004678 2.5e-22 109.8 166 39.8
BcaB06g29494 Brassica carinata HOM05D004153 ORTHO05D004678 3.2e-22 109.4 160 38.8
BcaB06g29496 Brassica carinata HOM05D004153 ORTHO05D004678 3.2e-22 109.4 143 40.6
BcaB06g29497 Brassica carinata HOM05D004153 ORTHO05D004678 3.2e-22 109.4 160 38.8
A04p35060 Brassica napus HOM05D004153 ORTHO05D004678 3.2e-22 109.4 150 38.0
AUR62008617 Chenopodium quinoa HOM05D004153 ORTHO05D004678 4.2e-22 109.0 170 35.9
Lsat_1_v5_gn_9_1141 Lactuca sativa HOM05D004153 ORTHO05D004678 4.2e-22 109.0 156 36.5
BcaC02g06991 Brassica carinata HOM05D004153 ORTHO05D004678 5.5e-22 108.6 150 39.3
BolC4t28778H Brassica oleracea HOM05D004153 ORTHO05D004678 5.5e-22 108.6 150 39.3
Thhalv10001647m.g Eutrema salsugineum HOM05D004153 ORTHO05D004678 5.5e-22 108.6 152 39.5
MD11G1304700 Malus domestica HOM05D004153 ORTHO05D004678 2.7e-21 106.3 94 48.9
Medtr7g108650 Medicago truncatula HOM05D004153 ORTHO05D004678 4.7e-21 105.5 166 38.0
Aa31LG1G29110 Aethionema arabicum HOM05D004153 ORTHO05D004678 6.1e-21 105.1 169 38.5
Psat3g022920 Pisum sativum HOM05D004153 ORTHO05D004678 6.1e-21 105.1 159 36.5
VMungo1383G3271 Vigna mungo HOM05D004153 ORTHO05D004678 1.0e-20 104.4 164 36.0
Lalb_Chr18g0047121 Lupinus albus HOM05D004153 ORTHO05D004678 1.4e-20 104.0 109 44.0
Sp4g29700 Schrenkiella parvula HOM05D004153 ORTHO05D004678 1.4e-20 104.0 151 39.1
MELO3C016017.2 Cucumis melo HOM05D004153 ORTHO05D004678 4.4e-19 99.0 164 46.3
CsaV3_7G029110 Cucumis sativus L. HOM05D004153 ORTHO05D004678 9.7e-19 97.8 109 47.7
C04p00110 Brassica napus HOM05D004153 ORTHO05D004678 2.2e-18 96.7 150 38.0
Actinidia24837 Actinidia chinensis HOM05D004153 ORTHO05D004678 2.8e-18 96.3 103 40.8
BcaC02g12543 Brassica carinata HOM05D004153 ORTHO05D004678 8.2e-18 94.7 150 36.7
BolC4t21658H Brassica oleracea HOM05D004153 ORTHO05D004678 1.4e-17 94.0 150 36.0
Rhsim01G0283900 Rhododendron simsii HOM05D004153 ORTHO05D004678 7.0e-17 91.7 160 34.4
HPP92_016940 Vanilla planifolia HOM05D004153 ORTHO05D004678 1.7e-15 87.0 163 34.4
ATR0796G004 Amborella trichopoda HOM05D004153 ORTHO05D004678 3.8e-15 85.9 159 32.1
BraA05t19015Z Brassica rapa HOM05D004153 ORTHO05D004678 3.2e-14 82.8 160 32.5
SMO115G0169 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 3.2e-14 82.8 120 37.5
A05p00190 Brassica napus HOM05D004153 ORTHO05D004678 3.6e-13 79.3 160 31.9
CDE02G0764 Ceratophyllum demersum HOM05D004153 ORTHO05D004678 1.0e-12 77.8 119 34.5
SEGI_18828 Sequoiadendron giganteum HOM05D004153 ORTHO05D004678 4.4e-11 72.4 147 30.6
Pp3c10_6760 Physcomitrium patens HOM05D004153 ORTHO05D004678 2.8e-10 69.7 151 31.1
BcaB02g08747 Brassica carinata HOM05D004153 ORTHO05D004678 6.3e-10 68.6 154 31.8
CBR_g30074 Chara braunii HOM05D004153 ORTHO05D004678 1.8e-09 67.0 147 27.9
AagrBONN_evm.TU.Sc2ySwM_362.296 Anthoceros agrestis HOM05D004153 ORTHO05D004678 3.1e-09 66.2 156 32.1
Pp3c2_17540 Physcomitrium patens HOM05D004153 ORTHO05D004678 5.3e-09 65.5 154 31.2
Pp3c26_2060 Physcomitrium patens HOM05D004153 ORTHO05D004678 1.6e-08 63.9 113 29.2
Pp3c4_22190 Physcomitrium patens HOM05D004153 ORTHO05D004678 5.9e-08 62.0 116 31.9
SMO144G0096 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 1.7e-07 60.5 108 30.6
AagrBONN_evm.TU.Sc2ySwM_117.3397 Anthoceros agrestis HOM05D004153 ORTHO05D004678 2.2e-07 60.1 90 35.6
Mapoly0050s0023 Marchantia polymorpha HOM05D004153 ORTHO05D004678 2.9e-07 59.7 114 32.5
ECA248G0131 Erigeron canadensis HOM05D004153 ORTHO05D004678 3.8e-07 59.3 77 37.7
Pp3c24_14170 Physcomitrium patens HOM05D004153 ORTHO05D004678 5.0e-07 58.9 113 37.2
Zm00001eb354150 Zea mays HOM05D004153 ORTHO05D004678 5.0e-07 58.9 102 34.3
Os05g0151200 Oryza sativa ssp. japonica HOM05D004153 ORTHO05D004678 8.5e-07 58.2 164 34.1
Lj1C32T8 Lonicera japonica HOM05D004153 ORTHO05D004678 1.5e-06 57.4 64 42.2
SMO340G0010 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 4.2e-06 55.8 111 28.8
Mapoly0003s0268 Marchantia polymorpha HOM05D004153 ORTHO05D004678 5.5e-06 55.5 68 33.8


User provided reference genes

Program Settings