Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI73G1120 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 0.0e+00 1699.5 848 100.0
TWI34G1071 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 0.0e+00 1360.1 872 81.2
Cfa002067 Carpinus fangiana HOM05D004666 ORTHO05D005822 3.3e-241 839.0 859 52.9
QL07p039593 Quercus lobata HOM05D004666 ORTHO05D005822 9.6e-241 837.4 864 53.0
Manes.13G012000 Manihot esculenta HOM05D004666 ORTHO05D005822 1.1e-236 823.9 897 51.5
Dinv21227 Davidia involucrata HOM05D004666 ORTHO05D005822 3.2e-236 822.4 868 51.2
CiPaw.09G011000 Carya illinoinensis HOM05D004666 ORTHO05D005822 8.2e-232 807.7 857 53.0
Potri.008G200900 Populus trichocarpa HOM05D004666 ORTHO05D005822 1.4e-231 807.0 932 48.6
Thecc.01G223300 Theobroma cacao HOM05D004666 ORTHO05D005822 6.1e-227 791.6 866 53.1
COL.COLO4_15658 Corchorus olitorius HOM05D004666 ORTHO05D005822 5.5e-220 768.5 993 44.7
Rhsim05G0022800 Rhododendron simsii HOM05D004666 ORTHO05D005822 1.0e-218 764.2 868 51.0
Gorai.001G233200 Gossypium raimondii HOM05D004666 ORTHO05D005822 9.7e-217 757.7 881 47.7
TAR365G1212 Trochodendron aralioides HOM05D004666 ORTHO05D005822 1.3e-213 747.3 842 49.3
Gohir.A07G200500 Gossypium hirsutum HOM05D004666 ORTHO05D005822 2.9e-213 746.1 896 47.7
Gohir.D07G206800 Gossypium hirsutum HOM05D004666 ORTHO05D005822 3.3e-209 732.6 882 46.9
Prupe.7G114200 Prunus persica HOM05D004666 ORTHO05D005822 5.3e-207 725.3 1013 44.6
Atru.chr8.1588 Acer truncatum HOM05D004666 ORTHO05D005822 2.2e-205 719.9 763 52.6
GSVIVG01032069001 Vitis vinifera HOM05D004666 ORTHO05D005822 7.2e-204 714.9 860 47.7
vmacro17219 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 1.5e-201 707.2 1018 44.0
vmacro22687 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 2.7e-195 686.4 1028 42.9
MELO3C009457.2 Cucumis melo HOM05D004666 ORTHO05D005822 3.0e-194 682.9 880 45.1
Sed0022470 Sechium edule HOM05D004666 ORTHO05D005822 6.3e-192 675.2 879 46.1
MD09G1081300 Malus domestica HOM05D004666 ORTHO05D005822 1.0e-189 667.9 987 42.7
CsaV3_3G037120 Cucumis sativus L. HOM05D004666 ORTHO05D005822 1.7e-189 667.2 903 43.9
ClCG10G019140 Citrullus lanatus HOM05D004666 ORTHO05D005822 5.0e-189 665.6 853 46.0
CANSAT54G2995 Cannabis sativa HOM05D004666 ORTHO05D005822 1.5e-188 664.1 862 44.0
THA.LOC104827512 Tarenaya hassleriana HOM05D004666 ORTHO05D005822 7.3e-188 661.8 868 45.3
Sp1g17360 Schrenkiella parvula HOM05D004666 ORTHO05D005822 6.1e-187 658.7 881 44.3
RcHm_v2.0_Chr4g0409331 Rosa chinensis HOM05D004666 ORTHO05D005822 5.2e-186 655.6 1061 38.8
A08p29790 Brassica napus HOM05D004666 ORTHO05D005822 1.5e-185 654.1 880 45.5
BraA08t34913Z Brassica rapa HOM05D004666 ORTHO05D005822 1.5e-185 654.1 879 45.2
Cc06_g05530 Coffea canephora HOM05D004666 ORTHO05D005822 6.4e-184 648.7 893 44.3
BcaB03g12912 Brassica carinata HOM05D004666 ORTHO05D005822 4.1e-183 646.0 875 43.2
Thhalv10006802m.g Eutrema salsugineum HOM05D004666 ORTHO05D005822 5.4e-183 645.6 868 43.9
MD12G1022600 Malus domestica HOM05D004666 ORTHO05D005822 9.2e-183 644.8 969 43.2
C05p17890 Brassica napus HOM05D004666 ORTHO05D005822 2.0e-182 643.7 863 44.5
BolC8t49572H Brassica oleracea HOM05D004666 ORTHO05D005822 3.5e-182 642.9 875 44.5
A06p15660 Brassica napus HOM05D004666 ORTHO05D005822 4.6e-182 642.5 866 43.4
BraA06t24675Z Brassica rapa HOM05D004666 ORTHO05D005822 4.6e-182 642.5 866 43.4
C08p19490 Brassica napus HOM05D004666 ORTHO05D005822 1.0e-181 641.3 876 44.2
BolC5t30496H Brassica oleracea HOM05D004666 ORTHO05D005822 1.0e-181 641.3 865 44.5
Oeu040521.1 Olea europaea HOM05D004666 ORTHO05D005822 1.3e-181 641.0 860 44.8
CARHR020050 Cardamine hirsuta HOM05D004666 ORTHO05D005822 1.7e-181 640.6 883 44.4
FvH4_6g18260 Fragaria vesca HOM05D004666 ORTHO05D005822 6.6e-181 638.6 1031 39.4
Carub.0001s1905 Capsella rubella HOM05D004666 ORTHO05D005822 3.3e-180 636.3 865 45.4
Ciclev10011197m.g Citrus clementina HOM05D004666 ORTHO05D005822 4.9e-176 622.5 710 51.1
Aqoxy3G00997 Aquilegia oxysepala HOM05D004666 ORTHO05D005822 1.9e-175 620.5 937 41.3
AT1G19485 Arabidopsis thaliana HOM05D004666 ORTHO05D005822 2.7e-174 616.7 846 44.4
EL10Ac7g16949 Beta vulgaris HOM05D004666 ORTHO05D005822 2.7e-174 616.7 959 39.9
Sed0014063 Sechium edule HOM05D004666 ORTHO05D005822 6.2e-171 605.5 1028 37.6
FAN06G2408 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.1e-170 604.7 1030 39.6
Ca_26672_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 8.9e-170 601.7 942 40.4
Ca_30723_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 8.9e-170 601.7 942 40.4
Medtr1g060580 Medicago truncatula HOM05D004666 ORTHO05D005822 1.5e-169 600.9 937 40.8
PGR142G0825 Punica granatum HOM05D004666 ORTHO05D005822 5.8e-169 599.0 915 41.2
FvH4_7g02500 Fragaria vesca HOM05D004666 ORTHO05D005822 1.7e-168 597.4 1026 38.1
arahy.Tifrunner.gnm1.ann1.G8H5C8 Arachis hypogaea HOM05D004666 ORTHO05D005822 2.2e-168 597.0 937 39.8
Aa31LG7G4140 Aethionema arabicum HOM05D004666 ORTHO05D005822 4.1e-167 592.8 867 43.0
arahy.Tifrunner.gnm1.ann1.WFL2XE Arachis hypogaea HOM05D004666 ORTHO05D005822 9.2e-167 591.7 907 40.4
Lalb_Chr02g0155381 Lupinus albus HOM05D004666 ORTHO05D005822 1.3e-165 587.8 1023 37.7
Nitab4.5_0000794g0050 Nicotiana tabacum HOM05D004666 ORTHO05D005822 1.7e-165 587.4 917 38.5
Glyma.10G068100 Glycine max HOM05D004666 ORTHO05D005822 3.0e-165 586.6 1077 37.6
DCAR_013376 Daucus carota HOM05D004666 ORTHO05D005822 5.1e-165 585.9 893 42.0
TPR.G35431 Trifolium pratense HOM05D004666 ORTHO05D005822 6.6e-165 585.5 958 38.6
Lj5g0013478 Lotus japonicus HOM05D004666 ORTHO05D005822 3.3e-164 583.2 1019 37.6
Lj2C133G10 Lonicera japonica HOM05D004666 ORTHO05D005822 9.5e-164 581.6 1005 37.7
PSO425G0050 Papaver somniferum HOM05D004666 ORTHO05D005822 9.5e-164 581.6 1075 38.0
arahy.Tifrunner.gnm1.ann1.T4KAXF Arachis hypogaea HOM05D004666 ORTHO05D005822 2.8e-163 580.1 937 39.0
HanXRQChr01g0029141 Helianthus annuus HOM05D004666 ORTHO05D005822 3.6e-163 579.7 875 43.4
PSO384G1605 Papaver somniferum HOM05D004666 ORTHO05D005822 6.2e-163 578.9 1068 37.4
Duzib114G0569 Durio zibethinus HOM05D004666 ORTHO05D005822 3.4e-161 573.2 864 43.9
Phvul.011G176600 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 7.6e-161 572.0 1062 35.9
Psat6g082920 Pisum sativum HOM05D004666 ORTHO05D005822 9.9e-161 571.6 915 39.1
Hund26220 Selenicereus undatus HOM05D004666 ORTHO05D005822 7.8e-158 562.0 1103 35.3
Haze_19573 Corylus avellana HOM05D004666 ORTHO05D005822 2.3e-157 560.5 730 45.5
AL1G32230 Arabidopsis lyrata HOM05D004666 ORTHO05D005822 6.6e-157 558.9 748 44.7
Migut.J00966 Erythranthe guttata HOM05D004666 ORTHO05D005822 1.9e-156 557.4 855 41.6
arahy.Tifrunner.gnm1.ann1.LSN657 Arachis hypogaea HOM05D004666 ORTHO05D005822 2.5e-156 557.0 910 38.9
Phvul.007G229800 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 4.7e-155 552.7 1070 35.4
Lj5g0018797 Lotus japonicus HOM05D004666 ORTHO05D005822 8.9e-154 548.5 912 38.3
Solyc09g009710.4 Solanum lycopersicum HOM05D004666 ORTHO05D005822 3.4e-153 546.6 897 38.7
VMungo0720G2175 Vigna mungo HOM05D004666 ORTHO05D005822 2.2e-152 543.9 1143 33.9
AUR62033523 Chenopodium quinoa HOM05D004666 ORTHO05D005822 4.9e-152 542.7 976 36.8
Sopen09g004490 Solanum pennellii HOM05D004666 ORTHO05D005822 3.2e-151 540.0 902 38.9
Lsat_1_v5_gn_1_48480 Lactuca sativa HOM05D004666 ORTHO05D005822 4.6e-150 536.2 848 39.3
FAN03G3209 Fragaria x ananassa HOM05D004666 ORTHO05D005822 3.0e-149 533.5 1090 35.0
Ah.08g210700 Amaranthus hybridus HOM05D004666 ORTHO05D005822 1.3e-147 528.1 1009 35.0
Nitab4.5_0009916g0020 Nicotiana tabacum HOM05D004666 ORTHO05D005822 3.6e-147 526.6 920 38.7
SGA_v2.0_scaffold147G36363 Striga asiatica HOM05D004666 ORTHO05D005822 6.9e-146 522.3 849 39.1
ECA248G3102 Erigeron canadensis HOM05D004666 ORTHO05D005822 1.7e-144 517.7 1069 36.0
Potri.006G036601 Populus trichocarpa HOM05D004666 ORTHO05D005822 4.9e-144 516.2 651 47.5
SalBow3G3865 Salvia bowleyana HOM05D004666 ORTHO05D005822 6.4e-144 515.8 871 38.8
Peaxi162Scf00015g00639 Petunia axillaris HOM05D004666 ORTHO05D005822 1.9e-143 514.2 936 37.5
RcHm_v2.0_Chr3g0472691 Rosa chinensis HOM05D004666 ORTHO05D005822 2.1e-142 510.8 536 51.1
MBI17_g35786_MAGBIO Magnolia biondii HOM05D004666 ORTHO05D005822 1.0e-141 508.4 861 39.4
FAN02G3237 Fragaria x ananassa HOM05D004666 ORTHO05D005822 4.8e-139 499.6 797 41.8
Nn2g14084 Nelumbo nucifera HOM05D004666 ORTHO05D005822 3.2e-135 486.9 663 45.9
Sc02g0001000 Simmondsia chinensis HOM05D004666 ORTHO05D005822 1.6e-131 474.6 993 36.0
ECA248G2596 Erigeron canadensis HOM05D004666 ORTHO05D005822 2.0e-129 467.6 1085 32.4
Sabra12G0045300 Salix brachista HOM05D004666 ORTHO05D005822 9.6e-124 448.7 674 40.9
Sabra08G0160300 Salix brachista HOM05D004666 ORTHO05D005822 1.3e-123 448.4 643 42.1
CDE08G1659 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 1.9e-119 434.5 849 32.7
Peaxi162Scf00036g00125 Petunia axillaris HOM05D004666 ORTHO05D005822 4.2e-119 433.3 929 35.8
FAN05G5602 Fragaria x ananassa HOM05D004666 ORTHO05D005822 9.3e-119 432.2 811 34.8
HPP92_015079 Vanilla planifolia HOM05D004666 ORTHO05D005822 8.8e-109 399.1 572 40.9
Cpa.g.sc5.49 Carica papaya HOM05D004666 ORTHO05D005822 5.9e-105 386.3 312 60.6
unitig_749.g14294 Utricularia gibba HOM05D004666 ORTHO05D005822 8.5e-104 382.5 858 32.3
AUR62028568 Chenopodium quinoa HOM05D004666 ORTHO05D005822 8.2e-99 365.9 625 37.4
Zm00001eb147330 Zea mays HOM05D004666 ORTHO05D005822 4.8e-91 340.1 544 38.1
Eucgr.K02035 Eucalyptus grandis HOM05D004666 ORTHO05D005822 7.0e-90 336.3 345 51.0
Mapoly0021s0027 Marchantia polymorpha HOM05D004666 ORTHO05D005822 3.2e-87 327.4 784 30.6
AagrBONN_evm.TU.Sc2ySwM_344.3422 Anthoceros agrestis HOM05D004666 ORTHO05D005822 9.1e-82 309.3 826 29.8
Os01g0858000 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 1.6e-81 308.5 357 43.7
Hma1.2p1_2087F.1_g313760 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 2.5e-79 301.2 292 52.7
Pp3c1_31470 Physcomitrium patens HOM05D004666 ORTHO05D005822 7.2e-79 299.7 815 27.9
PGSC0003DMG400008959 Solanum tuberosum HOM05D004666 ORTHO05D005822 2.9e-67 261.2 522 33.3
Cpa.g.c36918 Carica papaya HOM05D004666 ORTHO05D005822 4.7e-62 243.8 383 45.7
Haze_16425 Corylus avellana HOM05D004666 ORTHO05D005822 4.1e-58 230.7 295 45.1
RhsimUnG0189100 Rhododendron simsii HOM05D004666 ORTHO05D005822 2.1e-54 218.4 209 53.6
Rhsim09G0020300 Rhododendron simsii HOM05D004666 ORTHO05D005822 4.7e-54 217.2 464 36.4
ATR0820G266 Amborella trichopoda HOM05D004666 ORTHO05D005822 3.4e-52 211.1 303 42.6
RcHm_v2.0_Chr3g0472701 Rosa chinensis HOM05D004666 ORTHO05D005822 3.7e-51 207.6 229 48.0
Hma1.2p1_0084F.1_g043480 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.6e-49 202.2 207 52.2
FAN09G1276 Fragaria x ananassa HOM05D004666 ORTHO05D005822 3.5e-49 201.1 226 48.7
FAN05G4874 Fragaria x ananassa HOM05D004666 ORTHO05D005822 3.9e-48 197.6 315 43.8
SEGI_09998 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 2.2e-43 181.8 131 60.3
CBR_g38478 Chara braunii HOM05D004666 ORTHO05D005822 1.9e-39 168.7 175 47.4
Eucgr.L02043 Eucalyptus grandis HOM05D004666 ORTHO05D005822 2.1e-38 165.2 206 46.6
ATR0820G291 Amborella trichopoda HOM05D004666 ORTHO05D005822 1.4e-37 162.5 348 30.2
CDE08G0899 Ceratophyllum demersum HOM05D007279 ORTHO05D009212 1.5e-36 159.1 190 40.5
Hma1.2p1_0084F.1_g043500 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 7.6e-36 156.8 348 31.9
SHI23868 Sapria himalayana HOM05D004666 ORTHO05D005822 3.8e-35 154.5 215 44.2
FAN14G5421 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.9e-34 152.1 246 41.1
Hma1.2p1_2087F.1_g313780 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.7e-32 145.6 298 33.9
SEGI_32780 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 6.6e-32 143.7 214 38.8
QL03p004438 Quercus lobata HOM05D004666 ORTHO05D005822 7.3e-31 140.2 249 40.6
QL03p004414 Quercus lobata HOM05D004666 ORTHO05D005822 1.7e-27 129.0 311 31.5
CSS0049785 Camellia sinensis var. sinensis HOM05D004666 ORTHO05D005822 2.3e-24 118.6 117 53.8
Hma1.2p1_0084F.1_g043490 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.1e-21 109.8 146 41.8
FAN10G4251 Fragaria x ananassa HOM05D004666 ORTHO05D005822 3.1e-21 108.2 438 28.1
Sabra06G0024800 Salix brachista HOM05D004666 ORTHO05D005822 9.0e-21 106.7 193 38.9
CDE08G0815 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 1.9e-18 99.0 184 35.3
QL04p079053 Quercus lobata HOM05D004666 ORTHO05D005822 2.4e-18 98.6 280 28.6
Haze_16424 Corylus avellana HOM05D004666 ORTHO05D005822 8.7e-16 90.1 138 41.3
arahy.Tifrunner.gnm1.ann1.AE8L4W Arachis hypogaea HOM05D004666 ORTHO05D005822 9.6e-15 86.7 92 47.8
Os02g0307300 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 1.8e-13 82.4 194 33.5
Os07g0454400 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 6.7e-08 63.9 104 36.5
Sabra16G0037300 Salix brachista HOM05D004666 ORTHO05D017783 2.5e-07 62.0 41 70.7
MD03G1008700 Malus domestica HOM05D004666 ORTHO05D005822 2.8e-06 58.5 32 71.9


User provided reference genes

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