Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI73G0817 Tripterygium wilfordii HOM05D011029 ORTHO05D011115 2.1e-161 572.4 314 100.0
Potri.013G130500 Populus trichocarpa HOM05D011029 ORTHO05D011115 3.6e-31 139.8 256 39.8
Sabra13G0108300 Salix brachista HOM05D000001 ORTHO05D000424 2.2e-25 120.6 315 32.7
Sabra13G0109800 Salix brachista HOM05D000001 ORTHO05D011115 8.5e-25 118.6 198 34.8
CsaV3_6G008100 Cucumis sativus L. HOM05D002105 ORTHO05D001271 5.5e-24 115.9 268 32.1
Sed0016612 Sechium edule HOM05D002105 ORTHO05D011115 2.7e-23 113.6 270 30.0
ClCG06G002050 Citrullus lanatus HOM05D002105 ORTHO05D011115 1.8e-22 110.9 268 34.7
Cpa.g.sc83.45 Carica papaya HOM05D011029 ORTHO05D011115 2.0e-21 107.5 214 35.5
Haze_13182 Corylus avellana HOM05D002105 ORTHO05D001271 2.0e-21 107.5 271 31.7
COL.COLO4_07399 Corchorus olitorius HOM05D011029 ORTHO05D011115 2.6e-21 107.1 229 33.2
Thecc.04G193900 Theobroma cacao HOM05D011029 ORTHO05D011115 1.1e-19 101.7 276 35.1
arahy.Tifrunner.gnm1.ann1.JI498E Arachis hypogaea HOM05D002105 ORTHO05D001271 3.4e-18 96.7 269 29.4
Prupe.1G409200 Prunus persica HOM05D012314 ORTHO05D013875 1.0e-17 95.1 343 29.7
PGR042G3749 Punica granatum HOM05D002105 ORTHO05D001271 1.3e-17 94.7 223 32.3
Haze_13183 Corylus avellana HOM05D011029 ORTHO05D011115 1.7e-17 94.4 179 34.6
Gorai.005G027400 Gossypium raimondii HOM05D011029 ORTHO05D011115 1.7e-17 94.4 277 34.3
Gohir.D02G021900 Gossypium hirsutum HOM05D011029 ORTHO05D011115 3.8e-17 93.2 275 33.8
CsaV3_6G008110 Cucumis sativus L. HOM05D011029 ORTHO05D011115 8.5e-17 92.0 271 31.4
Gohir.A02G018501 Gossypium hirsutum HOM05D011029 ORTHO05D011115 1.9e-16 90.9 271 30.3
CDE08G0095 Ceratophyllum demersum HOM05D002105 ORTHO05D001271 2.5e-16 90.5 269 30.5
Atru.chr6.2981 Acer truncatum HOM05D002105 ORTHO05D001271 3.2e-16 90.1 267 33.3
MELO3C022324.2 Cucumis melo HOM05D011029 ORTHO05D011115 4.2e-16 89.7 209 30.1
Medtr2g090520 Medicago truncatula HOM05D002105 ORTHO05D001271 4.2e-16 89.7 268 29.5
MELO3C022325.2 Cucumis melo HOM05D002105 ORTHO05D011115 2.7e-15 87.0 302 32.5
PGR042G3221 Punica granatum HOM05D002105 ORTHO05D001271 3.6e-15 86.7 223 32.3
TAR626G1709 Trochodendron aralioides HOM05D002105 ORTHO05D001271 3.6e-15 86.7 233 30.0
Manes.18G145698 Manihot esculenta HOM05D012314 ORTHO05D013875 6.1e-15 85.9 231 29.0
CiPaw.12G118700 Carya illinoinensis HOM05D002105 ORTHO05D001271 1.0e-14 85.1 271 26.2
PGR042G0540 Punica granatum HOM05D002105 ORTHO05D001271 1.0e-14 85.1 267 28.1
arahy.Tifrunner.gnm1.ann1.425CWT Arachis hypogaea HOM05D002105 ORTHO05D001271 1.4e-14 84.7 227 30.0
TAR624G0920 Trochodendron aralioides HOM05D002105 ORTHO05D001271 1.4e-14 84.7 233 30.5
BraA08t35291Z Brassica rapa HOM05D000178 ORTHO05D011115 2.3e-14 84.0 275 28.7
MELO3C035705.2 Cucumis melo HOM05D011029 ORTHO05D011115 6.7e-14 82.4 216 30.1
arahy.Tifrunner.gnm1.ann1.9ER5KX Arachis hypogaea HOM05D000961 ORTHO05D001271 1.1e-13 81.6 227 28.6
Gohir.A01G063400 Gossypium hirsutum HOM05D002105 ORTHO05D001271 1.1e-13 81.6 272 30.9
QL08p022033 Quercus lobata HOM05D002105 ORTHO05D001271 1.1e-13 81.6 271 30.6
Gohir.D01G049800 Gossypium hirsutum HOM05D002105 ORTHO05D001271 1.5e-13 81.3 272 27.2
Gorai.002G069700 Gossypium raimondii HOM05D002105 ORTHO05D001271 1.5e-13 81.3 272 27.2
PGR083G2752 Punica granatum HOM05D002105 ORTHO05D001271 1.5e-13 81.3 271 28.4
arahy.Tifrunner.gnm1.ann1.A63KDQ Arachis hypogaea HOM05D002105 ORTHO05D001271 2.0e-13 80.9 211 29.9
Potri.011G119700 Populus trichocarpa HOM05D002105 ORTHO05D001271 2.0e-13 80.9 272 29.4
Lj1C842G6 Lonicera japonica HOM05D002105 ORTHO05D001271 2.6e-13 80.5 272 29.8
C08p14020 Brassica napus HOM05D000178 ORTHO05D011115 3.3e-13 80.1 238 28.6
Cfa020580 Carpinus fangiana HOM05D002105 ORTHO05D001271 2.2e-12 77.4 231 29.9
GSVIVG01014330001 Vitis vinifera HOM05D002105 ORTHO05D001271 2.2e-12 77.4 233 30.0
ClCG03G006560 Citrullus lanatus HOM05D011029 ORTHO05D011115 3.7e-12 76.6 201 31.8
COL.COLO4_07397 Corchorus olitorius HOM05D011029 ORTHO05D011115 3.7e-12 76.6 148 33.1
arahy.Tifrunner.gnm1.ann1.92S0K9 Arachis hypogaea HOM05D002105 ORTHO05D001271 8.2e-12 75.5 271 26.9
arahy.Tifrunner.gnm1.ann1.ZUZE17 Arachis hypogaea HOM05D002105 ORTHO05D001271 8.2e-12 75.5 211 28.9
BolC8t49038H Brassica oleracea HOM05D000178 ORTHO05D011115 8.2e-12 75.5 272 27.2
Carub.0001s1043 Capsella rubella HOM05D014980 ORTHO05D011115 8.2e-12 75.5 218 28.4
CiPaw.11G170100 Carya illinoinensis HOM05D002105 ORTHO05D001271 8.2e-12 75.5 230 27.4
COL.COLO4_27176 Corchorus olitorius HOM05D002105 ORTHO05D001271 8.2e-12 75.5 274 29.9
Glyma.06G240500 Glycine max HOM05D002105 ORTHO05D001271 8.2e-12 75.5 271 28.8
Gohir.D13G129900 Gossypium hirsutum HOM05D002105 ORTHO05D001271 8.2e-12 75.5 233 28.3
Sabra11G0104100 Salix brachista HOM05D002105 ORTHO05D001271 8.2e-12 75.5 272 31.2
arahy.Tifrunner.gnm1.ann1.E3CL15 Arachis hypogaea HOM05D002105 ORTHO05D001271 1.4e-11 74.7 271 27.7
FvH4_2g31591 Fragaria vesca HOM05D012314 ORTHO05D013875 1.8e-11 74.3 321 27.1
Gohir.A13G126100 Gossypium hirsutum HOM05D002105 ORTHO05D001271 2.4e-11 73.9 271 24.7
MBI07_g30189_MAGBIO Magnolia biondii HOM05D002105 ORTHO05D001271 3.1e-11 73.6 222 29.3
Gorai.013G145900 Gossypium raimondii HOM05D002105 ORTHO05D001271 4.1e-11 73.2 279 25.8
HPP92_024062 Vanilla planifolia HOM05D002105 ORTHO05D001271 4.1e-11 73.2 231 28.1
CSS0030542 Camellia sinensis var. sinensis HOM05D002105 ORTHO05D001271 5.3e-11 72.8 273 30.4
Glyma.13G276500 Glycine max HOM05D002105 ORTHO05D001271 5.3e-11 72.8 271 30.6
Lj8A155G95 Lonicera japonica HOM05D002105 ORTHO05D001271 5.3e-11 72.8 276 28.3
SGA_v2.0_scaffold34G13814 Striga asiatica HOM05D002105 ORTHO05D001271 5.3e-11 72.8 272 27.6
Dinv03896 Davidia involucrata HOM05D002105 ORTHO05D001271 7.0e-11 72.4 273 31.5
Dinv04301 Davidia involucrata HOM05D002105 ORTHO05D001271 7.0e-11 72.4 273 31.5
Eucgr.F03313 Eucalyptus grandis HOM05D002105 ORTHO05D001271 7.0e-11 72.4 273 29.7
SGA_v2.0_scaffold73G24261 Striga asiatica HOM05D002105 ORTHO05D001271 9.1e-11 72.0 271 25.8
Ciclev10008004m.g Citrus clementina HOM05D002105 ORTHO05D001271 1.2e-10 71.6 271 28.8
Dinv20177 Davidia involucrata HOM05D002105 ORTHO05D001271 1.2e-10 71.6 232 27.2
Sed0025666 Sechium edule HOM05D002105 ORTHO05D001271 1.2e-10 71.6 270 25.2
Thecc.07G090000 Theobroma cacao HOM05D002105 ORTHO05D001271 2.0e-10 70.9 231 28.6
COL.COLO4_05441 Corchorus olitorius HOM05D011029 ORTHO05D011115 2.6e-10 70.5 187 28.3
Oeu019314.1 Olea europaea HOM05D002105 ORTHO05D001271 4.5e-10 69.7 273 26.0
Glyma.13G296001 Glycine max HOM05D002105 ORTHO05D001271 5.9e-10 69.3 215 32.1
Potri.001G399400 Populus trichocarpa HOM05D002105 ORTHO05D001271 7.7e-10 68.9 271 31.0
THA.LOC104813390 Tarenaya hassleriana HOM05D002105 ORTHO05D001271 7.7e-10 68.9 273 31.1
FAN24G2134 Fragaria x ananassa HOM05D005314 ORTHO05D006522 1.0e-09 68.6 138 33.3
VMungo1127G2095 Vigna mungo HOM05D002105 ORTHO05D001271 1.0e-09 68.6 271 23.6
Eucgr.F01145 Eucalyptus grandis HOM05D002105 ORTHO05D001271 1.3e-09 68.2 271 24.4
Gohir.D05G355400 Gossypium hirsutum HOM05D002105 ORTHO05D001271 1.3e-09 68.2 273 25.3
Gorai.009G387800 Gossypium raimondii HOM05D002105 ORTHO05D001271 1.3e-09 68.2 273 25.3
TWI39G0142 Tripterygium wilfordii HOM05D002105 ORTHO05D001271 1.3e-09 68.2 271 25.5
GSVIVG01020845001 Vitis vinifera HOM05D002105 ORTHO05D013875 1.3e-09 68.2 201 30.3
BraA06t23967Z Brassica rapa HOM05D000178 ORTHO05D000229 1.7e-09 67.8 212 27.4
CANSAT56G3600 Cannabis sativa HOM05D002105 ORTHO05D001271 1.7e-09 67.8 230 27.4
Gohir.A13G146000 Gossypium hirsutum HOM05D002105 ORTHO05D001271 1.7e-09 67.8 271 31.0
PSO541G4007 Papaver somniferum HOM05D002105 ORTHO05D001271 1.7e-09 67.8 270 30.4
Duzib170G0794 Durio zibethinus HOM05D002105 ORTHO05D001271 2.2e-09 67.4 220 28.2
Gohir.A04G030600 Gossypium hirsutum HOM05D002105 ORTHO05D001271 2.9e-09 67.0 273 25.3
Lj3g0008045 Lotus japonicus HOM05D002105 ORTHO05D001271 3.8e-09 66.6 271 23.6
PSO675G3374 Papaver somniferum HOM05D002105 ORTHO05D001271 3.8e-09 66.6 270 30.4
Glyma.01G098300 Glycine max HOM05D018758 ORTHO05D019776 5.0e-09 66.2 214 31.3
HPP92_028219 Vanilla planifolia HOM05D002105 ORTHO05D001271 5.0e-09 66.2 231 26.8
Sabra16G0261900 Salix brachista HOM05D002105 ORTHO05D001271 6.5e-09 65.9 271 29.5
Phvul.011G158400 Phaseolus vulgaris HOM05D002105 ORTHO05D001271 8.5e-09 65.5 274 27.7
CsaV3_4G033670 Cucumis sativus L. HOM05D002105 ORTHO05D001271 1.1e-08 65.1 271 28.4
Gohir.D05G354300 Gossypium hirsutum HOM05D002105 ORTHO05D001271 1.1e-08 65.1 273 25.3
FAN20G0580 Fragaria x ananassa HOM05D000786 ORTHO05D013875 1.5e-08 64.7 236 24.2
Lj3g0009937 Lotus japonicus HOM05D002105 ORTHO05D001271 1.5e-08 64.7 271 28.8
FAN27G0041 Fragaria x ananassa HOM05D000786 ORTHO05D013875 1.9e-08 64.3 236 25.0
Haze_09432 Corylus avellana HOM05D001020 ORTHO05D001137 2.5e-08 63.9 243 26.7
Oeu051068.1 Olea europaea HOM05D002105 ORTHO05D001271 2.5e-08 63.9 273 23.4
ClCG11G018050 Citrullus lanatus HOM05D002105 ORTHO05D001271 3.2e-08 63.5 271 25.8
CARHR235180 Cardamine hirsuta HOM05D002105 ORTHO05D001271 4.2e-08 63.2 273 30.0
CsaV3_6G008120 Cucumis sativus L. HOM05D002105 ORTHO05D001271 5.5e-08 62.8 268 24.6
Gorai.013G168900 Gossypium raimondii HOM05D002105 ORTHO05D001271 5.5e-08 62.8 271 29.9
TPR.G39006 Trifolium pratense HOM05D002105 ORTHO05D001271 5.5e-08 62.8 271 25.5
Ca_01848_v3 Cicer arietinum L. HOM05D002105 ORTHO05D001271 7.2e-08 62.4 271 23.2
Eucgr.D01610 Eucalyptus grandis HOM05D011029 ORTHO05D011115 7.2e-08 62.4 105 36.2
TWI38G1694 Tripterygium wilfordii HOM05D002105 ORTHO05D001271 7.2e-08 62.4 271 28.8
DCAR_020991 Daucus carota HOM05D002105 ORTHO05D001271 9.4e-08 62.0 272 29.8
Glyma.12G224800 Glycine max HOM05D002105 ORTHO05D001271 9.4e-08 62.0 271 29.2
Gohir.D13G150900 Gossypium hirsutum HOM05D002105 ORTHO05D001271 9.4e-08 62.0 272 30.1
Glyma.01G098200 Glycine max HOM05D018758 ORTHO05D019776 1.2e-07 61.6 213 29.6
Medtr2g085330 Medicago truncatula HOM05D002105 ORTHO05D001271 1.2e-07 61.6 271 23.6
Phvul.005G072500 Phaseolus vulgaris HOM05D002105 ORTHO05D001271 1.2e-07 61.6 220 26.4
VMungo1080G0407 Vigna mungo HOM05D002105 ORTHO05D001271 1.2e-07 61.6 271 29.2
Hund22838 Selenicereus undatus HOM05D002105 ORTHO05D001271 1.6e-07 61.2 271 23.6
CAN.G162.54 Capsicum annuum HOM05D002105 ORTHO05D001271 2.1e-07 60.8 273 24.2
FvH4_2g31540 Fragaria vesca HOM05D012314 ORTHO05D013875 2.1e-07 60.8 207 30.4
Rhsim04G0021400 Rhododendron simsii HOM05D002105 ORTHO05D001271 2.1e-07 60.8 274 25.5
Sed0026326 Sechium edule HOM05D002105 ORTHO05D001271 2.1e-07 60.8 270 27.8
MELO3C016696.2 Cucumis melo HOM05D002105 ORTHO05D001271 3.6e-07 60.1 287 27.2
FAN15G2750 Fragaria x ananassa HOM05D005314 ORTHO05D006522 3.6e-07 60.1 241 24.1
Sc03g0010070 Simmondsia chinensis HOM05D002105 ORTHO05D001271 3.6e-07 60.1 273 27.1
Thecc.04G161200 Theobroma cacao HOM05D022523 ORTHO05D025167 3.6e-07 60.1 165 28.5
COL.COLO4_14960 Corchorus olitorius HOM05D022523 ORTHO05D025167 4.7e-07 59.7 169 27.2
SEGI_21183 Sequoiadendron giganteum HOM05D002105 ORTHO05D001271 4.7e-07 59.7 272 24.3
SEGI_30217 Sequoiadendron giganteum HOM05D002105 ORTHO05D001271 4.7e-07 59.7 272 24.3
BcaC07g38596 Brassica carinata HOM05D014980 ORTHO05D011115 6.1e-07 59.3 163 28.8
Gorai.009G386800 Gossypium raimondii HOM05D002105 ORTHO05D001271 6.1e-07 59.3 274 24.5
Gorai.009G386100 Gossypium raimondii HOM05D002105 ORTHO05D001271 8.0e-07 58.9 124 33.1
Cc05_g11980 Coffea canephora HOM05D002105 ORTHO05D001271 1.0e-06 58.5 271 28.0
Migut.M00803 Erythranthe guttata HOM05D002105 ORTHO05D001271 1.0e-06 58.5 276 24.6
Lsat_1_v5_gn_9_97981 Lactuca sativa HOM05D002105 ORTHO05D001271 1.4e-06 58.2 273 27.8
Lalb_Chr25g0286341 Lupinus albus HOM05D002105 ORTHO05D001271 1.4e-06 58.2 270 23.7
THA.LOC104811864 Tarenaya hassleriana HOM05D002105 ORTHO05D001271 1.4e-06 58.2 220 27.7
Zm00001eb310480 Zea mays HOM05D002105 ORTHO05D001271 1.4e-06 58.2 274 23.4
AL7G25270 Arabidopsis lyrata HOM05D002105 ORTHO05D001271 1.8e-06 57.8 273 28.2
BolC8t49039H Brassica oleracea HOM05D014980 ORTHO05D011115 1.8e-06 57.8 237 27.0
FAN24G2222 Fragaria x ananassa HOM05D012314 ORTHO05D013875 1.8e-06 57.8 278 25.9
Peaxi162Scf00069g01513 Petunia axillaris HOM05D002105 ORTHO05D001271 1.8e-06 57.8 273 23.8
CSS0000814 Camellia sinensis var. sinensis HOM05D002105 ORTHO05D001271 2.3e-06 57.4 228 25.0
Gohir.D05G355175 Gossypium hirsutum HOM05D002105 ORTHO05D001271 2.3e-06 57.4 222 26.6
Sp7g25440 Schrenkiella parvula HOM05D002105 ORTHO05D001271 2.3e-06 57.4 273 25.6
Sopen07g031290 Solanum pennellii HOM05D002105 ORTHO05D001271 2.3e-06 57.4 273 23.4
MELO3C024939.2 Cucumis melo HOM05D002105 ORTHO05D001271 3.0e-06 57.0 65 44.6
Gohir.D04G139850 Gossypium hirsutum HOM05D022523 ORTHO05D025167 3.0e-06 57.0 216 25.0
AT4G27500 Arabidopsis thaliana HOM05D002105 ORTHO05D001271 4.0e-06 56.6 273 25.6
HanXRQChr13g0389181 Helianthus annuus HOM05D002105 ORTHO05D001271 4.0e-06 56.6 220 25.5
HanXRQChr13g0389191 Helianthus annuus HOM05D002105 ORTHO05D001271 4.0e-06 56.6 220 25.5
Manes.03G109600 Manihot esculenta HOM05D002105 ORTHO05D001271 4.0e-06 56.6 271 28.0
DCAR_019557 Daucus carota HOM05D002105 ORTHO05D001271 5.2e-06 56.2 272 29.8
Gorai.012G124800 Gossypium raimondii HOM05D022523 ORTHO05D025167 5.2e-06 56.2 216 25.0
Lalb_Chr19g0134171 Lupinus albus HOM05D002105 ORTHO05D001271 5.2e-06 56.2 249 23.3
Medtr2g090555 Medicago truncatula HOM05D002105 ORTHO05D001271 5.2e-06 56.2 273 28.2
Psat5g243840 Pisum sativum HOM05D002105 ORTHO05D001271 5.2e-06 56.2 271 23.2
ATR0737G090 Amborella trichopoda HOM05D002105 ORTHO05D001271 6.7e-06 55.8 272 23.5
Carub.0007s1335 Capsella rubella HOM05D002105 ORTHO05D001271 6.7e-06 55.8 274 29.2
Cpa.g.sc80.67 Carica papaya HOM05D002105 ORTHO05D001271 6.7e-06 55.8 231 25.5
Thhalv10013033m.g Eutrema salsugineum HOM05D002105 ORTHO05D001271 6.7e-06 55.8 279 24.4
Hma1.2p1_0531F.1_g173370 Hydrangea macrophylla HOM05D002105 ORTHO05D001271 6.7e-06 55.8 272 22.1
C05p09240 Brassica napus HOM05D014980 ORTHO05D011115 8.8e-06 55.5 245 26.1
CSS0012512 Camellia sinensis var. sinensis HOM05D002105 ORTHO05D001271 8.8e-06 55.5 232 24.1
FvH4_2g31590 Fragaria vesca HOM05D012314 ORTHO05D013875 8.8e-06 55.5 278 25.5


User provided reference genes

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