Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI73G0356 Tripterygium wilfordii HOM05D007947 ORTHO05D010018 8.3e-35 149.8 76 100.0
DCAR_007806 Daucus carota HOM05D007947 ORTHO05D010018 1.3e-24 115.9 76 77.6
QL05p063460 Quercus lobata HOM05D007947 ORTHO05D010018 9.5e-23 109.8 79 72.2
TAR626G1269 Trochodendron aralioides HOM05D007947 ORTHO05D010018 1.6e-22 109.0 73 78.1
Cfa013564 Carpinus fangiana HOM05D007947 ORTHO05D010018 2.1e-22 108.6 76 76.3
Haze_22181 Corylus avellana HOM05D007947 ORTHO05D010018 3.6e-22 107.8 76 76.3
CiPaw.10G111600 Carya illinoinensis HOM05D007947 ORTHO05D010018 8.9e-21 103.2 76 72.4
CANSAT35G0466 Cannabis sativa HOM05D007947 ORTHO05D010018 1.5e-20 102.4 68 77.9
ClCG02G013940 Citrullus lanatus HOM05D007947 ORTHO05D010018 5.8e-20 100.5 62 82.3
Manes.03G076700 Manihot esculenta HOM05D007947 ORTHO05D010018 7.5e-20 100.1 77 70.1
MELO3C011733.2 Cucumis melo HOM05D007947 ORTHO05D010018 2.9e-19 98.2 61 78.7
Cpa.g.sc53.149 Carica papaya HOM05D007947 ORTHO05D010018 3.7e-19 97.8 76 72.4
Eucgr.D01574 Eucalyptus grandis HOM05D007947 ORTHO05D010018 3.7e-19 97.8 65 75.4
CsaV3_5G006230 Cucumis sativus L. HOM05D007947 ORTHO05D010018 4.9e-19 97.4 61 78.7
THA.LOC109116600 Tarenaya hassleriana HOM05D007947 ORTHO05D010018 4.9e-19 97.4 71 71.8
COL.COLO4_30922 Corchorus olitorius HOM05D007947 ORTHO05D010018 8.3e-19 96.7 76 71.1
PGR142G1313 Punica granatum HOM05D007947 ORTHO05D010018 1.4e-18 95.9 67 79.1
Nn7g37910 Nelumbo nucifera HOM05D007947 ORTHO05D010018 1.9e-18 95.5 76 67.1
TPR.G15070 Trifolium pratense HOM05D007947 ORTHO05D010018 2.4e-18 95.1 76 67.1
Eucgr.E02008 Eucalyptus grandis HOM05D007947 ORTHO05D010018 3.2e-18 94.7 50 90.0
Duzib192G0353 Durio zibethinus HOM05D007947 ORTHO05D010018 4.1e-18 94.4 77 71.4
Hma1.2p1_0326F.1_g126180 Hydrangea macrophylla HOM05D007947 ORTHO05D010018 7.1e-18 93.6 62 74.2
Sp1g27170 Schrenkiella parvula HOM05D007947 ORTHO05D010018 7.1e-18 93.6 76 67.1
BcaB07g32795 Brassica carinata HOM05D007947 ORTHO05D010018 9.2e-18 93.2 76 67.1
Medtr5g098300 Medicago truncatula HOM05D007947 ORTHO05D010018 9.2e-18 93.2 78 66.7
Glyma.02G308300 Glycine max HOM05D007947 ORTHO05D010018 1.2e-17 92.8 66 68.2
Gohir.D10G048700 Gossypium hirsutum HOM05D007947 ORTHO05D010018 2.1e-17 92.0 67 71.6
MD10G1239200 Malus domestica HOM05D007947 ORTHO05D010018 2.1e-17 92.0 76 65.8
Prupe.4G105200 Prunus persica HOM05D007947 ORTHO05D010018 2.1e-17 92.0 76 67.1
BcaC05g27167 Brassica carinata HOM05D007947 ORTHO05D010018 2.7e-17 91.7 76 67.1
BolC5t31792H Brassica oleracea HOM05D007947 ORTHO05D010018 2.7e-17 91.7 76 67.1
LjContig00081g0013704 Lotus japonicus HOM05D007947 ORTHO05D010018 2.7e-17 91.7 67 70.1
A09p34910 Brassica napus HOM05D007947 ORTHO05D010018 3.5e-17 91.3 76 67.1
BraA09t39021Z Brassica rapa HOM05D007947 ORTHO05D010018 3.5e-17 91.3 76 67.1
Potri.003G148100 Populus trichocarpa HOM05D007947 ORTHO05D010018 3.5e-17 91.3 62 72.6
Gohir.A10G047400 Gossypium hirsutum HOM05D007947 ORTHO05D010018 4.6e-17 90.9 67 70.1
Gorai.011G051800 Gossypium raimondii HOM05D007947 ORTHO05D010018 4.6e-17 90.9 67 71.6
Carub.0001s2978 Capsella rubella HOM05D007947 ORTHO05D010018 6.0e-17 90.5 76 68.4
Thhalv10009264m.g Eutrema salsugineum HOM05D007947 ORTHO05D010018 6.0e-17 90.5 67 71.6
AT1G31335 Arabidopsis thaliana HOM05D007947 ORTHO05D010018 7.8e-17 90.1 76 68.4
C05p30570 Brassica napus HOM05D007947 ORTHO05D010018 7.8e-17 90.1 76 64.5
CSS0033410 Camellia sinensis var. sinensis HOM05D007947 ORTHO05D010018 7.8e-17 90.1 72 65.3
C07p14500 Brassica napus HOM05D007947 ORTHO05D010018 1.0e-16 89.7 59 72.9
BraA07t28738Z Brassica rapa HOM05D007947 ORTHO05D010018 1.0e-16 89.7 64 70.3
MD05G1260300 Malus domestica HOM05D007947 ORTHO05D010018 1.0e-16 89.7 76 64.5
RcHm_v2.0_Chr5g0018941 Rosa chinensis HOM05D007947 ORTHO05D010018 1.3e-16 89.4 77 64.9
Ca_06479_v3 Cicer arietinum L. HOM05D007947 ORTHO05D010018 1.7e-16 89.0 67 71.6
Cc09_g06500 Coffea canephora HOM05D007947 ORTHO05D010018 1.7e-16 89.0 57 75.4
Ciclev10017351m.g Citrus clementina HOM05D007947 ORTHO05D010018 2.3e-16 88.6 50 84.0
Sabra03G0107800 Salix brachista HOM05D000054 ORTHO05D000171 2.3e-16 88.6 62 71.0
BcaB03g13798 Brassica carinata HOM05D007947 ORTHO05D010018 3.0e-16 88.2 62 71.0
BolC7t41949H Brassica oleracea HOM05D007947 ORTHO05D010018 3.0e-16 88.2 62 71.0
Psat2g003200 Pisum sativum HOM05D007947 ORTHO05D010018 3.0e-16 88.2 76 64.5
AL1G49700 Arabidopsis lyrata HOM05D007947 ORTHO05D010018 3.9e-16 87.8 62 74.2
Phvul.008G288200 Phaseolus vulgaris HOM05D007947 ORTHO05D010018 5.1e-16 87.4 67 64.2
FAN21G3705 Fragaria x ananassa HOM05D000217 ORTHO05D000121 8.6e-16 86.7 65 69.2
Duzib235G0890 Durio zibethinus HOM05D007947 ORTHO05D010018 1.1e-15 86.3 68 63.2
Potri.001G082332 Populus trichocarpa HOM05D007947 ORTHO05D010018 2.5e-15 85.1 67 70.1
Sopen02g018620 Solanum pennellii HOM05D007947 ORTHO05D010018 3.3e-15 84.7 76 56.6
CARHR030800 Cardamine hirsuta HOM05D007947 ORTHO05D010018 4.3e-15 84.3 64 70.3
FAN16G2050 Fragaria x ananassa HOM05D007947 ORTHO05D010018 5.6e-15 84.0 65 66.2
PGSC0003DMG400021235 Solanum tuberosum HOM05D007947 ORTHO05D010018 7.3e-15 83.6 76 57.9
Glyma.14G004800 Glycine max HOM05D007947 ORTHO05D010018 1.2e-14 82.8 66 63.6
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 1.2e-14 82.8 49 75.5
Gohir.D09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 4.7e-14 80.9 61 62.3
Gorai.006G091500 Gossypium raimondii HOM05D007947 ORTHO05D010018 4.7e-14 80.9 61 62.3
arahy.Tifrunner.gnm1.ann1.F2U9KI Arachis hypogaea HOM05D001153 ORTHO05D000949 8.1e-14 80.1 46 80.4
Gohir.A09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 4.0e-13 77.8 61 62.3
Nn7g37911 Nelumbo nucifera HOM05D007947 ORTHO05D010018 6.8e-13 77.0 76 53.9
Sc09g0004070 Simmondsia chinensis HOM05D007947 ORTHO05D010018 8.9e-13 76.6 57 71.9
Oeu030705.1 Olea europaea HOM05D007947 ORTHO05D010018 1.5e-12 75.9 67 55.2
Lalb_Chr04g0247121 Lupinus albus HOM05D007947 ORTHO05D010018 5.8e-12 73.9 58 65.5
Ciclev10017780m.g Citrus clementina HOM05D007947 ORTHO05D010018 7.6e-12 73.6 40 80.0
Migut.M01948 Erythranthe guttata HOM05D007947 ORTHO05D010018 7.6e-12 73.6 76 55.3
SalBow8G2047 Salvia bowleyana HOM05D007947 ORTHO05D010018 7.6e-12 73.6 67 56.7
Zm00001eb057320 Zea mays HOM05D007947 ORTHO05D010018 1.7e-11 72.4 69 55.1
Os03g0780200 Oryza sativa ssp. japonica HOM05D007947 ORTHO05D010018 1.9e-10 68.9 69 56.5
HanXRQChr16g0528851 Helianthus annuus HOM05D007947 ORTHO05D010018 5.4e-10 67.4 63 57.1
Zm00001eb213660 Zea mays HOM05D007947 ORTHO05D010018 1.2e-09 66.2 71 53.5
Zm00001eb059730 Zea mays HOM05D007947 ORTHO05D010018 1.6e-09 65.9 69 50.7
Medtr5g098270 Medicago truncatula HOM05D007947 ORTHO05D010018 4.6e-09 64.3 51 58.8
Nn7g37890 Nelumbo nucifera HOM05D021221 ORTHO05D025179 7.3e-07 57.0 63 50.8
Glyma.19G182200 Glycine max HOM05D009309 ORTHO05D011491 2.8e-06 55.1 48 62.5
Phvul.001G177600 Phaseolus vulgaris HOM05D009309 ORTHO05D011491 2.8e-06 55.1 47 66.0
Lj1g0009603 Lotus japonicus HOM05D009309 ORTHO05D011491 3.6e-06 54.7 48 62.5
Glyma.03G181500 Glycine max HOM05D009309 ORTHO05D011491 4.7e-06 54.3 48 62.5


User provided reference genes

Program Settings