Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI73G0320 Tripterygium wilfordii HOM05D005644 ORTHO05D007092 7.6e-109 397.1 193 100.0
Gohir.A02G166400 Gossypium hirsutum HOM05D005644 ORTHO05D007092 1.9e-104 382.5 193 94.3
Gohir.D03G013600 Gossypium hirsutum HOM05D005644 ORTHO05D007092 3.3e-104 381.7 193 94.3
Gorai.003G013900 Gossypium raimondii HOM05D005644 ORTHO05D007092 3.3e-104 381.7 193 94.3
Potri.005G121700 Populus trichocarpa HOM05D005644 ORTHO05D007092 9.6e-104 380.2 193 92.7
Manes.02G095200 Manihot esculenta HOM05D005644 ORTHO05D007092 3.6e-103 378.3 193 93.3
Thecc.01G033400 Theobroma cacao HOM05D005644 ORTHO05D007092 1.4e-102 376.3 193 93.8
QL06p046522 Quercus lobata HOM05D005644 ORTHO05D007092 3.1e-102 375.2 192 92.7
CiPaw.02G018800 Carya illinoinensis HOM05D005644 ORTHO05D007092 4.0e-102 374.8 193 92.2
Duzib264G1010 Durio zibethinus HOM05D005644 ORTHO05D007092 6.9e-102 374.0 193 92.7
Ciclev10022394m.g Citrus clementina HOM05D005644 ORTHO05D007092 1.2e-101 373.2 193 90.7
Potri.007G023500 Populus trichocarpa HOM05D005644 ORTHO05D007092 1.5e-101 372.9 193 91.7
Lalb_Chr09g0333481 Lupinus albus HOM05D005644 ORTHO05D007092 3.4e-101 371.7 193 91.2
Prupe.7G156300 Prunus persica HOM05D005644 ORTHO05D007092 3.4e-101 371.7 193 92.7
Dinv39995 Davidia involucrata HOM05D005644 ORTHO05D007092 4.5e-101 371.3 190 93.2
MELO3C026580.2 Cucumis melo HOM05D005644 ORTHO05D007092 7.6e-101 370.5 193 90.2
Sed0008907 Sechium edule HOM05D005644 ORTHO05D007092 2.2e-100 369.0 193 90.2
arahy.Tifrunner.gnm1.ann1.59MT2Q Arachis hypogaea HOM05D005644 ORTHO05D007092 3.8e-100 368.2 193 89.6
CsaV3_3G042790 Cucumis sativus L. HOM05D005644 ORTHO05D007092 3.8e-100 368.2 193 89.6
Manes.01G136400 Manihot esculenta HOM05D005644 ORTHO05D007092 3.8e-100 368.2 193 91.2
Glyma.16G138200 Glycine max HOM05D005644 ORTHO05D007092 4.9e-100 367.9 193 90.2
Phvul.003G254800 Phaseolus vulgaris HOM05D005644 ORTHO05D007092 4.9e-100 367.9 193 89.6
Atru.chr7.2312 Acer truncatum HOM05D005644 ORTHO05D007092 8.4e-100 367.1 191 90.1
Eucgr.I02428 Eucalyptus grandis HOM05D005644 ORTHO05D007092 1.1e-99 366.7 193 91.2
TAR101G0001 Trochodendron aralioides HOM05D005644 ORTHO05D007092 1.9e-99 365.9 193 89.6
vmacro17823 Vaccinium macrocarpon HOM05D005644 ORTHO05D007092 1.9e-99 365.9 194 91.2
MD02G1145400 Malus domestica HOM05D005644 ORTHO05D007092 2.4e-99 365.5 193 90.2
Lj2A454T58 Lonicera japonica HOM05D005644 ORTHO05D007092 3.2e-99 365.2 193 91.7
Nn1g04949 Nelumbo nucifera HOM05D005644 ORTHO05D007092 3.2e-99 365.2 193 90.2
Psat4g094240 Pisum sativum HOM05D005644 ORTHO05D007092 4.2e-99 364.8 193 89.6
GSVIVG01018941001 Vitis vinifera HOM05D005644 ORTHO05D007092 4.2e-99 364.8 193 90.2
arahy.Tifrunner.gnm1.ann1.SR5TCU Arachis hypogaea HOM05D005644 ORTHO05D007092 2.1e-98 362.5 190 89.5
Ca_22319_v3 Cicer arietinum L. HOM05D005644 ORTHO05D007092 2.7e-98 362.1 193 88.6
SalBow5G1882 Salvia bowleyana HOM05D005644 ORTHO05D007092 2.7e-98 362.1 190 90.0
Cc07_g09670 Coffea canephora HOM05D005644 ORTHO05D007092 4.6e-98 361.3 190 90.0
MSTRG.3592 Avicennia marina HOM05D005644 ORTHO05D007092 6.0e-98 360.9 190 89.5
Oeu050374.1 Olea europaea HOM05D005644 ORTHO05D007092 6.0e-98 360.9 190 90.0
AT2G18290 Arabidopsis thaliana HOM05D005644 ORTHO05D007092 1.0e-97 360.1 193 87.0
AL3G51550 Arabidopsis lyrata HOM05D005644 ORTHO05D007092 1.3e-97 359.8 193 87.0
Medtr8g077200 Medicago truncatula HOM05D005644 ORTHO05D007092 1.3e-97 359.8 193 88.6
Hund21503 Selenicereus undatus HOM05D005644 ORTHO05D007092 5.1e-97 357.8 193 87.0
ClCG10G013900 Citrullus lanatus HOM05D005644 ORTHO05D007092 6.7e-97 357.5 219 79.9
Lj4g0022669 Lotus japonicus HOM05D005644 ORTHO05D007092 1.1e-96 356.7 194 87.1
CANSAT01G2444 Cannabis sativa HOM05D005644 ORTHO05D007092 1.9e-96 355.9 193 87.6
PSO675G1163 Papaver somniferum HOM05D005644 ORTHO05D007092 1.9e-96 355.9 193 86.0
Solyc02g062680.3 Solanum lycopersicum HOM05D005644 ORTHO05D007092 1.9e-96 355.9 190 90.0
Sopen02g013700 Solanum pennellii HOM05D005644 ORTHO05D007092 1.9e-96 355.9 190 90.0
Aa31LG8G15730 Aethionema arabicum HOM05D005644 ORTHO05D007092 2.5e-96 355.5 193 86.5
Sp3g31700 Schrenkiella parvula HOM05D005644 ORTHO05D007092 3.3e-96 355.1 193 86.0
THA.LOC104819776 Tarenaya hassleriana HOM05D005644 ORTHO05D007092 3.3e-96 355.1 193 87.6
PGSC0003DMG400015483 Solanum tuberosum HOM05D005644 ORTHO05D007092 4.3e-96 354.8 190 89.5
PSO541G0643 Papaver somniferum HOM05D005644 ORTHO05D007092 5.6e-96 354.4 193 86.0
EL10Ac4g07935 Beta vulgaris HOM05D005644 ORTHO05D007092 1.3e-95 353.2 193 86.5
Carub.0003s3246 Capsella rubella HOM05D005644 ORTHO05D007092 1.6e-95 352.8 193 85.5
Migut.L00368 Erythranthe guttata HOM05D005644 ORTHO05D007092 2.1e-95 352.4 190 86.8
Migut.L00376 Erythranthe guttata HOM05D005644 ORTHO05D007092 2.1e-95 352.4 190 86.8
A06p33310 Brassica napus HOM05D005644 ORTHO05D007092 2.8e-95 352.1 193 85.5
C03p59070 Brassica napus HOM05D005644 ORTHO05D007092 2.8e-95 352.1 193 85.5
BolC3t18168H Brassica oleracea HOM05D005644 ORTHO05D007092 2.8e-95 352.1 193 85.5
RcHm_v2.0_Chr2g0101251 Rosa chinensis HOM05D005644 ORTHO05D007092 2.8e-95 352.1 193 87.6
Thhalv10022866m.g Eutrema salsugineum HOM05D005644 ORTHO05D007092 4.8e-95 351.3 193 85.5
SGA_v2.0_scaffold44G16541 Striga asiatica HOM05D005644 ORTHO05D007092 4.8e-95 351.3 190 87.9
Glyma.02G055400 Glycine max HOM05D005644 ORTHO05D007092 8.1e-95 350.5 193 87.0
Sc16g0002690 Simmondsia chinensis HOM05D005644 ORTHO05D007092 1.1e-94 350.1 193 85.5
BcaB08g34803 Brassica carinata HOM05D005644 ORTHO05D007092 1.8e-94 349.4 193 84.5
Oeu002799.2 Olea europaea HOM05D005644 ORTHO05D007092 1.8e-94 349.4 190 87.4
PGR031G1764 Punica granatum HOM05D005644 ORTHO05D007092 2.4e-94 349.0 197 86.8
CAN.G53.17 Capsicum annuum HOM05D005644 ORTHO05D007092 3.1e-94 348.6 190 87.4
HanXRQChr09g0261331 Helianthus annuus HOM05D005644 ORTHO05D007092 6.9e-94 347.4 193 85.0
unitig_37.g12363 Utricularia gibba HOM05D005644 ORTHO05D007092 1.2e-93 346.7 190 86.3
THA.LOC104804235 Tarenaya hassleriana HOM05D005644 ORTHO05D007092 4.5e-93 344.7 193 86.0
FvH4_1g13080 Fragaria vesca HOM05D005644 ORTHO05D007092 5.8e-93 344.4 190 86.8
ECA232G0363 Erigeron canadensis HOM05D005644 ORTHO05D007092 7.6e-93 344.0 193 83.9
Lsat_1_v5_gn_4_151201 Lactuca sativa HOM05D005644 ORTHO05D007092 1.7e-92 342.8 182 89.6
MBI02_g12270_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.7e-92 342.8 210 79.0
TPR.G24098 Trifolium pratense HOM05D005644 ORTHO05D007092 6.4e-92 340.9 232 73.7
Aqoxy6G01133 Aquilegia oxysepala HOM05D005644 ORTHO05D007092 1.1e-91 340.1 193 82.9
AUR62020530 Chenopodium quinoa HOM05D005644 ORTHO05D007092 2.5e-91 339.0 193 83.9
AUR62043224 Chenopodium quinoa HOM05D005644 ORTHO05D007092 2.5e-91 339.0 193 83.9
PGR083G1765 Punica granatum HOM05D005644 ORTHO05D007092 2.7e-90 335.5 193 83.9
Rhsim11G0151400 Rhododendron simsii HOM05D005644 ORTHO05D007092 2.7e-90 335.5 247 70.4
ATR0594G186 Amborella trichopoda HOM05D005644 ORTHO05D007092 3.5e-90 335.1 193 82.9
FvH4_5g29620 Fragaria vesca HOM05D005644 ORTHO05D007092 3.5e-90 335.1 190 84.7
BraA06t26260Z Brassica rapa HOM05D005644 ORTHO05D007092 3.7e-87 325.1 199 79.4
Zm00001eb342630 Zea mays HOM05D005644 ORTHO05D007092 1.8e-86 322.8 177 84.2
Os05g0579800 Oryza sativa ssp. japonica HOM05D005644 ORTHO05D007092 3.1e-86 322.0 200 76.5
VMungo0251G3244 Vigna mungo HOM05D005644 ORTHO05D007092 5.3e-86 321.2 170 90.0
AUR62034193 Chenopodium quinoa HOM05D005644 ORTHO05D007092 9.0e-86 320.5 193 79.8
CSS0024834 Camellia sinensis var. sinensis HOM05D005644 ORTHO05D007092 1.0e-84 317.0 164 92.1
Nitab4.5_0000136g0330 Nicotiana tabacum HOM05D005644 ORTHO05D007092 2.9e-84 315.5 172 88.4
CDE04G3399 Ceratophyllum demersum HOM05D005644 ORTHO05D007092 8.4e-84 313.9 164 88.4
Peaxi162Scf00008g03525 Petunia axillaris HOM05D005644 ORTHO05D007092 8.4e-84 313.9 190 83.2
Nitab4.5_0005482g0020 Nicotiana tabacum HOM05D005644 ORTHO05D007092 1.4e-83 313.2 174 88.5
Zm00001eb294590 Zea mays HOM05D005644 ORTHO05D007092 7.9e-82 307.4 177 79.7
Sabra05G0100200 Salix brachista HOM05D005644 ORTHO05D007092 3.0e-81 305.4 159 89.9
Atru.chr3.600 Acer truncatum HOM05D005644 ORTHO05D007092 9.7e-80 300.4 194 74.2
FAN19G1519 Fragaria x ananassa HOM05D005644 ORTHO05D007092 8.2e-79 297.4 167 85.6
BolC7t40857H Brassica oleracea HOM05D005644 ORTHO05D007092 1.6e-74 283.1 197 70.6
FAN28G2376 Fragaria x ananassa HOM05D005644 ORTHO05D003509 3.7e-71 271.9 157 85.4
FAN23G1669 Fragaria x ananassa HOM05D005644 ORTHO05D007092 4.8e-71 271.6 158 84.8
Cpa.g.sc6.131 Carica papaya HOM05D005644 ORTHO05D007092 6.9e-70 267.7 147 87.1
FAN08G2945 Fragaria x ananassa HOM05D005644 ORTHO05D007092 1.5e-69 266.5 156 83.3
Hma1.2p1_0789F.1_g218290 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 4.5e-69 265.0 134 94.8
MBI08_g40822_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.1e-67 260.4 227 61.2
HPP92_023420 Vanilla planifolia HOM05D005644 ORTHO05D007092 2.7e-66 255.8 194 67.0
Mapoly0106s0034 Marchantia polymorpha HOM05D005644 ORTHO05D007092 8.2e-63 244.2 185 64.3
BcaC06g36396 Brassica carinata HOM05D005644 ORTHO05D007092 3.1e-62 242.3 164 70.7
SGA_v2.0_scaffold2G01321 Striga asiatica HOM05D005644 ORTHO05D007092 3.2e-59 232.3 190 64.7
FAN26G0781 Fragaria x ananassa HOM05D000577 ORTHO05D003509 4.2e-59 231.9 133 85.0
Pp3c7_6320 Physcomitrium patens HOM05D005644 ORTHO05D007092 7.2e-59 231.1 190 59.5
SMO137G0236 Selaginella moellendorffii HOM05D005644 ORTHO05D007092 1.6e-58 229.9 170 62.9
AagrBONN_evm.TU.Sc2ySwM_362.2207 Anthoceros agrestis HOM05D005644 ORTHO05D007092 6.7e-57 224.6 173 60.1
FAN18G2110 Fragaria x ananassa HOM05D005644 ORTHO05D007092 2.6e-53 212.6 166 65.7
MCO15G254 Micromonas commoda HOM05D005644 ORTHO05D007092 5.9e-53 211.5 178 56.7
CARHR108880 Cardamine hirsuta HOM05D005644 ORTHO05D007092 1.0e-52 210.7 112 86.6
PRCOL_00001837 Prasinoderma coloniale HOM05D005644 ORTHO05D007092 5.7e-48 194.9 166 56.6
SEGI_22782 Sequoiadendron giganteum HOM05D005644 ORTHO05D007092 7.7e-45 184.5 110 77.3
Haze_27504 Corylus avellana HOM05D005644 ORTHO05D007092 4.7e-42 175.3 142 54.9
CBR_g49399 Chara braunii HOM05D005644 ORTHO05D007092 8.3e-39 164.5 112 64.3
Cre13.g571850 Chlamydomonas reinhardtii HOM05D005644 ORTHO05D007092 9.1e-38 161.0 144 50.7
DCAR_025950 Daucus carota HOM05D005644 ORTHO05D007092 8.9e-33 144.4 135 57.8
FAN13G0528 Fragaria x ananassa HOM05D005644 ORTHO05D007092 1.8e-30 136.7 167 47.9
Hma1.2p1_2451F.1_g322360 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 3.2e-30 136.0 135 55.6
MBI02_g42708_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 5.9e-29 131.7 135 54.8
C07p04570 Brassica napus HOM05D005644 ORTHO05D007092 1.8e-25 120.2 126 49.2
MBI02_g23461_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 6.8e-25 118.2 219 39.3
MBI18_g16980_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 3.7e-23 112.5 123 51.2
MBI02_g17151_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 3.2e-22 109.4 135 45.9
MBI18_g01974_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 3.2e-22 109.4 68 75.0
COL.COLO4_22055 Corchorus olitorius HOM05D005644 ORTHO05D007092 4.7e-18 95.5 50 92.0
Hund21501 Selenicereus undatus HOM05D005644 ORTHO05D007092 1.8e-17 93.6 53 84.9
Hma1.2p1_0450F.1_g155660 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 2.3e-17 93.2 57 73.7
Ah.13g077660 Amaranthus hybridus HOM05D005644 ORTHO05D007092 9.8e-16 87.8 57 68.4
Thecc.08G151500 Theobroma cacao HOM05D005644 ORTHO05D007092 1.4e-09 67.4 33 84.8
MBI16_g04464_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 4.0e-09 65.9 102 38.2
Dinv38404 Davidia involucrata HOM05D005644 ORTHO05D007092 9.9e-08 61.2 37 73.0
Thecc.01G208400 Theobroma cacao HOM05D005644 ORTHO05D408548 4.9e-07 58.9 34 82.4


User provided reference genes

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