Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI73G0275 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.1e-72 276.6 142 100.0
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 3.9e-54 214.9 175 69.1
TWI53G0135 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 2.9e-49 198.7 160 70.0
Haze_15306 Corylus avellana HOM05D004032 ORTHO05D004462 2.2e-36 156.0 217 48.8
Gohir.A11G216800 Gossypium hirsutum HOM05D004032 ORTHO05D004462 5.0e-33 144.8 210 46.7
Gohir.D11G206500 Gossypium hirsutum HOM05D004032 ORTHO05D004462 5.0e-33 144.8 210 46.7
Gorai.007G221700 Gossypium raimondii HOM05D004032 ORTHO05D004462 5.0e-33 144.8 210 46.7
COL.COLO4_11544 Corchorus olitorius HOM05D004032 ORTHO05D004462 6.5e-33 144.4 175 53.7
Duzib147G1493 Durio zibethinus HOM05D004032 ORTHO05D004462 1.9e-32 142.9 213 45.5
Duzib187G1312 Durio zibethinus HOM05D004032 ORTHO05D004462 1.9e-32 142.9 207 46.9
Thecc.01G069300 Theobroma cacao HOM05D004032 ORTHO05D004462 2.5e-32 142.5 207 45.9
CiPaw.02G004200 Carya illinoinensis HOM05D004032 ORTHO05D004462 3.2e-32 142.1 219 43.4
RcHm_v2.0_Chr2g0107481 Rosa chinensis HOM05D004032 ORTHO05D004462 2.1e-31 139.4 184 50.0
Dinv30069 Davidia involucrata HOM05D004032 ORTHO05D004462 2.7e-31 139.0 199 48.7
Actinidia16438 Actinidia chinensis HOM05D004032 ORTHO05D004462 8.0e-31 137.5 174 52.3
Prupe.6G223500 Prunus persica HOM05D004032 ORTHO05D004462 8.0e-31 137.5 222 44.6
CiPaw.01G006700 Carya illinoinensis HOM05D004032 ORTHO05D004462 1.0e-30 137.1 219 43.8
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 1.4e-30 136.7 201 46.3
VMungo0251G2494 Vigna mungo HOM05D004032 ORTHO05D004462 2.3e-30 136.0 210 45.7
FvH4_1g17290 Fragaria vesca HOM05D004032 ORTHO05D004462 4.0e-30 135.2 174 51.1
FAN19G2997 Fragaria x ananassa HOM05D004032 ORTHO05D004462 4.0e-30 135.2 174 51.1
Lj4g0009335 Lotus japonicus HOM05D004032 ORTHO05D004462 6.7e-30 134.4 192 48.4
Manes.13G113400 Manihot esculenta HOM05D004032 ORTHO05D004462 6.7e-30 134.4 213 44.6
Phvul.003G236700 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 8.8e-30 134.0 208 45.2
Glyma.17G163400 Glycine max HOM05D004032 ORTHO05D004462 3.3e-29 132.1 208 44.7
Sabra05G0116500 Salix brachista HOM05D004032 ORTHO05D004462 3.3e-29 132.1 198 45.5
FAN28G1831 Fragaria x ananassa HOM05D004032 ORTHO05D004462 4.4e-29 131.7 184 47.8
Glyma.05G103900 Glycine max HOM05D004032 ORTHO05D004462 5.7e-29 131.3 208 44.2
Gohir.A10G090100 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.7e-28 129.8 162 51.9
GSVIVG01000145001 Vitis vinifera HOM05D004032 ORTHO05D004462 1.7e-28 129.8 211 43.6
CSS0002661 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 2.2e-28 129.4 207 46.9
Medtr4g095440 Medicago truncatula HOM05D004032 ORTHO05D004462 2.8e-28 129.0 202 44.1
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 6.3e-28 127.9 196 46.9
Potri.005G145800 Populus trichocarpa HOM05D004032 ORTHO05D004462 6.3e-28 127.9 214 44.4
CSS0031607 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 8.2e-28 127.5 207 46.4
Manes.12G111200 Manihot esculenta HOM05D004032 ORTHO05D004462 8.2e-28 127.5 220 41.8
Potri.007G053300 Populus trichocarpa HOM05D004032 ORTHO05D004462 8.2e-28 127.5 216 43.1
Rhsim08G0095200 Rhododendron simsii HOM05D004032 ORTHO05D004462 8.2e-28 127.5 174 48.3
TPR.G23878 Trifolium pratense HOM05D004032 ORTHO05D004462 8.2e-28 127.5 198 42.9
Psat4g083520 Pisum sativum HOM05D004032 ORTHO05D004462 1.1e-27 127.1 198 41.9
vmacro05391 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 1.1e-27 127.1 179 47.5
vmacro17992 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 1.1e-27 127.1 175 46.9
FAN26G2221 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.4e-27 126.7 183 47.5
Rhsim10G0102400 Rhododendron simsii HOM05D004032 ORTHO05D004462 3.1e-27 125.6 184 51.6
QL06p039858 Quercus lobata HOM05D004032 ORTHO05D004462 7.0e-27 124.4 175 46.9
Oeu054187.1 Olea europaea HOM05D004032 ORTHO05D004462 2.0e-26 122.9 178 47.2
Gorai.011G107600 Gossypium raimondii HOM05D004032 ORTHO05D004462 4.5e-26 121.7 162 50.0
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 5.9e-26 121.3 164 50.0
Glyma.11G049700 Glycine max HOM05D004032 ORTHO05D004462 2.2e-25 119.4 215 41.9
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 3.8e-25 118.6 181 45.3
FAN23G1545 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.1e-24 117.1 182 44.5
Actinidia21232 Actinidia chinensis HOM05D004032 ORTHO05D004462 1.5e-24 116.7 134 53.7
Lalb_Chr16g0389141 Lupinus albus HOM05D004032 ORTHO05D004462 2.5e-24 115.9 194 41.2
Cpa.g.sc6.44 Carica papaya HOM05D004032 ORTHO05D004462 9.4e-24 114.0 207 42.5
MD15G1293900 Malus domestica HOM05D004032 ORTHO05D004462 9.4e-24 114.0 236 37.3
Gohir.D03G027200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.6e-23 113.2 203 42.9
Gorai.003G028900 Gossypium raimondii HOM05D004032 ORTHO05D004462 2.1e-23 112.8 204 42.6
DCAR_025783 Daucus carota HOM05D004032 ORTHO05D004462 2.7e-23 112.5 220 39.5
Eucgr.I00716 Eucalyptus grandis HOM05D004032 ORTHO05D004462 3.6e-23 112.1 206 40.3
Glyma.15G185500 Glycine max HOM05D004032 ORTHO05D004462 4.7e-23 111.7 175 44.6
HanXRQChr12g0373191 Helianthus annuus HOM05D004032 ORTHO05D004462 4.7e-23 111.7 180 42.2
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 6.1e-23 111.3 183 41.5
Glyma.01G192400 Glycine max HOM05D004032 ORTHO05D004462 6.1e-23 111.3 215 38.6
Oeu040591.1 Olea europaea HOM05D004032 ORTHO05D004462 6.1e-23 111.3 175 45.1
Oeu040592.1 Olea europaea HOM05D004032 ORTHO05D004462 6.1e-23 111.3 175 45.1
Aqoxy6G02719 Aquilegia oxysepala HOM05D004032 ORTHO05D004462 1.4e-22 110.2 214 38.3
Nitab4.5_0000868g0010 Nicotiana tabacum HOM05D004032 ORTHO05D004462 1.8e-22 109.8 209 42.1
SGA_v2.0_scaffold15G07422 Striga asiatica HOM05D004032 ORTHO05D004462 3.0e-22 109.0 159 48.4
Ciclev10026503m.g Citrus clementina HOM05D004032 ORTHO05D004462 5.2e-22 108.2 205 42.4
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 6.8e-22 107.8 200 40.0
DCAR_010831 Daucus carota HOM05D004032 ORTHO05D004462 8.8e-22 107.5 199 40.7
Oeu013283.1 Olea europaea HOM05D004032 ORTHO05D004462 8.8e-22 107.5 203 41.4
SalBow6G2131 Salvia bowleyana HOM05D004032 ORTHO05D004462 8.8e-22 107.5 149 45.6
Lalb_Chr05g0213571 Lupinus albus HOM05D004032 ORTHO05D004462 2.6e-21 105.9 216 38.4
MD02G1182600 Malus domestica HOM05D004032 ORTHO05D004462 2.6e-21 105.9 233 36.5
TAR628G1371 Trochodendron aralioides HOM05D004032 ORTHO05D004462 2.6e-21 105.9 183 41.0
Gohir.A02G153200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 3.4e-21 105.5 131 54.2
BcaB04g20056 Brassica carinata HOM05D004032 ORTHO05D004462 5.7e-21 104.8 164 45.1
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 7.5e-21 104.4 202 40.1
Lj7A88G34 Lonicera japonica HOM05D004032 ORTHO05D004462 9.8e-21 104.0 164 44.5
CAN.G1075.18 Capsicum annuum HOM05D004032 ORTHO05D004462 1.7e-20 103.2 216 36.6
Thhalv10005011m.g Eutrema salsugineum HOM05D004032 ORTHO05D004462 1.7e-20 103.2 177 42.4
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 1.7e-20 103.2 179 41.9
Lj4A160G62 Lonicera japonica HOM05D004032 ORTHO05D004462 1.7e-20 103.2 107 57.0
Lalb_Chr09g0334051 Lupinus albus HOM05D004032 ORTHO05D004462 1.7e-20 103.2 190 38.9
Peaxi162Scf00264g00213 Petunia axillaris HOM05D004032 ORTHO05D004462 2.2e-20 102.8 228 36.4
Aa31LG1G15950 Aethionema arabicum HOM05D004032 ORTHO05D004462 3.7e-20 102.1 181 43.1
Lj2g0017817 Lotus japonicus HOM05D004032 ORTHO05D004462 3.7e-20 102.1 203 40.9
PGSC0003DMG400024938 Solanum tuberosum HOM05D004032 ORTHO05D004462 4.8e-20 101.7 203 40.4
Oeu031172.1 Olea europaea HOM05D004032 ORTHO05D004462 6.3e-20 101.3 205 40.5
Hma1.2p1_0942F.1_g239820 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 8.3e-20 100.9 210 39.0
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 8.3e-20 100.9 180 40.0
Oeu031171.1 Olea europaea HOM05D004032 ORTHO05D004462 1.1e-19 100.5 205 40.5
Solyc02g092590.3 Solanum lycopersicum HOM05D004032 ORTHO05D004462 1.4e-19 100.1 212 38.2
VMungo1215G3265 Vigna mungo HOM05D004032 ORTHO05D004462 1.4e-19 100.1 144 47.2
CsaV3_6G043920 Cucumis sativus L. HOM05D004032 ORTHO05D004462 2.4e-19 99.4 197 39.1
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 2.4e-19 99.4 199 38.7
Actinidia36441 Actinidia chinensis HOM05D004032 ORTHO05D004462 3.1e-19 99.0 182 42.9
C07p24210 Brassica napus HOM05D004032 ORTHO05D004462 3.1e-19 99.0 172 42.4
BolC7t42948H Brassica oleracea HOM05D004032 ORTHO05D004462 3.1e-19 99.0 172 42.4
Sed0022630 Sechium edule HOM05D004032 ORTHO05D004462 3.1e-19 99.0 176 41.5
Actinidia11994 Actinidia chinensis HOM05D004032 ORTHO05D004462 4.1e-19 98.6 130 50.0
C09p10940 Brassica napus HOM05D004032 ORTHO05D004462 7.0e-19 97.8 175 42.9
Sopen02g037160 Solanum pennellii HOM05D004032 ORTHO05D004462 7.0e-19 97.8 215 37.7
BcaC03g18375 Brassica carinata HOM05D004032 ORTHO05D004462 9.1e-19 97.4 173 43.4
C02p64510 Brassica napus HOM05D004032 ORTHO05D004462 9.1e-19 97.4 173 43.4
BolC2t12515H Brassica oleracea HOM05D004032 ORTHO05D004462 9.1e-19 97.4 173 43.4
Hma1.2p1_0017F.1_g012150 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 9.1e-19 97.4 188 35.6
AL8G43930 Arabidopsis lyrata HOM05D004032 ORTHO05D004462 1.6e-18 96.7 174 39.7
Sp2g29270 Schrenkiella parvula HOM05D004032 ORTHO05D004462 1.6e-18 96.7 176 39.8
BcaC04g23221 Brassica carinata HOM05D004032 ORTHO05D004462 2.0e-18 96.3 172 42.4
BolC9t53989H Brassica oleracea HOM05D004032 ORTHO05D004462 2.0e-18 96.3 172 42.4
A09p09370 Brassica napus HOM05D004032 ORTHO05D004462 2.7e-18 95.9 174 40.8
A02p44240 Brassica napus HOM05D004032 ORTHO05D004462 3.5e-18 95.5 173 41.6
BraA02t09348Z Brassica rapa HOM05D004032 ORTHO05D004462 3.5e-18 95.5 173 41.6
BraA09t36588Z Brassica rapa HOM05D004032 ORTHO05D004462 3.5e-18 95.5 174 40.8
Phvul.002G012400 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 3.5e-18 95.5 144 46.5
Sed0016234 Sechium edule HOM05D004032 ORTHO05D004462 3.5e-18 95.5 151 39.7
THA.LOC104819252 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 3.5e-18 95.5 170 40.0
MSTRG.23688 Avicennia marina HOM05D004032 ORTHO05D004462 4.5e-18 95.1 185 38.9
BcaB02g09927 Brassica carinata HOM05D004032 ORTHO05D004462 4.5e-18 95.1 172 41.3
A07p16510 Brassica napus HOM05D004032 ORTHO05D004462 7.7e-18 94.4 172 41.3
BraA07t29375Z Brassica rapa HOM05D004032 ORTHO05D004462 7.7e-18 94.4 172 41.3
ECA232G3054 Erigeron canadensis HOM05D004032 ORTHO05D004462 1.0e-17 94.0 172 39.0
Sed0024584 Sechium edule HOM05D004032 ORTHO05D004462 1.0e-17 94.0 155 41.9
ClCG01G017390 Citrullus lanatus HOM05D004032 ORTHO05D004462 1.3e-17 93.6 196 36.7
Nn5g30527 Nelumbo nucifera HOM05D004032 ORTHO05D004462 2.9e-17 92.4 130 47.7
arahy.Tifrunner.gnm1.ann1.L7L2H1 Arachis hypogaea HOM05D004032 ORTHO05D004462 3.8e-17 92.0 105 52.4
THA.LOC104827558 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 1.1e-16 90.5 173 38.2
BcaC06g34822 Brassica carinata HOM05D004032 ORTHO05D004462 1.5e-16 90.1 172 40.7
arahy.Tifrunner.gnm1.ann1.4VG7J5 Arachis hypogaea HOM05D004032 ORTHO05D004462 1.9e-16 89.7 224 35.3
arahy.Tifrunner.gnm1.ann1.7C4JLW Arachis hypogaea HOM05D004032 ORTHO05D004462 2.5e-16 89.4 105 52.4
CARHR280210 Cardamine hirsuta HOM05D004032 ORTHO05D004462 2.5e-16 89.4 177 41.2
Carub.0008s2709 Capsella rubella HOM05D004032 ORTHO05D004462 3.3e-16 89.0 95 50.5
Cc07_g06860 Coffea canephora HOM05D004032 ORTHO05D004462 5.5e-16 88.2 150 44.7
Atru.chr3.163 Acer truncatum HOM05D004032 ORTHO05D004462 2.8e-15 85.9 211 35.1
AT5G67390 Arabidopsis thaliana HOM05D004032 ORTHO05D004462 2.8e-15 85.9 102 50.0
Atru.chr3.192 Acer truncatum HOM05D004032 ORTHO05D004462 8.0e-15 84.3 214 35.0
Lsat_1_v5_gn_2_83781 Lactuca sativa HOM05D004032 ORTHO05D004462 1.8e-14 83.2 177 38.4
ECA238G1032 Erigeron canadensis HOM05D004032 ORTHO05D004462 3.0e-14 82.4 167 39.5
CSS0022714 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 5.2e-14 81.6 186 36.6
Nitab4.5_0006689g0040 Nicotiana tabacum HOM05D004032 ORTHO05D004462 8.9e-14 80.9 81 58.0
Hund16386 Selenicereus undatus HOM05D004032 ORTHO05D004462 8.9e-14 80.9 110 50.0
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 1.5e-13 80.1 194 37.6
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 1.5e-13 80.1 194 37.6
MELO3C020862.2 Cucumis melo HOM05D004032 ORTHO05D004462 2.0e-13 79.7 172 34.9
Hund13934 Selenicereus undatus HOM05D004032 ORTHO05D004462 2.0e-13 79.7 156 38.5
SGA_v2.0_scaffold72G24091 Striga asiatica HOM05D004032 ORTHO05D004462 2.0e-13 79.7 150 37.3
CsaV3_2G016520 Cucumis sativus L. HOM05D004032 ORTHO05D004462 3.4e-13 79.0 172 34.3
HanXRQChr14g0441881 Helianthus annuus HOM05D004032 ORTHO05D004462 3.4e-13 79.0 152 41.4
Ah.02g125580 Amaranthus hybridus HOM05D004032 ORTHO05D004462 5.7e-13 78.2 190 35.3
CSS0026387 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 5.7e-13 78.2 193 35.8
ClCG02G012390 Citrullus lanatus HOM05D004032 ORTHO05D004462 1.7e-12 76.6 173 32.9
Nn1g04611 Nelumbo nucifera HOM05D004032 ORTHO05D004462 1.7e-12 76.6 194 33.0
THA.LOC104821233 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 2.8e-12 75.9 122 42.6
CANSAT01G2482 Cannabis sativa HOM05D004032 ORTHO05D004462 3.7e-12 75.5 46 76.1
HPP92_007856 Vanilla planifolia HOM05D004032 ORTHO05D004462 8.3e-12 74.3 126 40.5
arahy.Tifrunner.gnm1.ann1.NPYP4Z Arachis hypogaea HOM05D004032 ORTHO05D004462 2.0e-10 69.7 45 73.3
Os03g0442900 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 1.0e-09 67.4 189 31.7
CDE02G2979 Ceratophyllum demersum HOM05D000039 ORTHO05D000870 1.7e-09 66.6 169 33.1
Sc16g0000080 Simmondsia chinensis HOM05D004032 ORTHO05D004462 1.7e-09 66.6 167 34.1
EL10Ac6g15646 Beta vulgaris HOM05D004032 ORTHO05D004462 6.6e-09 64.7 40 77.5
Os03g0762100 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 8.6e-09 64.3 47 63.8
Os03g0604566 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 1.5e-08 63.5 53 62.3
ATR0030G044 Amborella trichopoda HOM05D004032 ORTHO05D004462 7.3e-08 61.2 60 55.0
Zm00001eb214280 Zea mays HOM05D004032 ORTHO05D004462 9.5e-08 60.8 89 41.6
Os12g0580600 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 2.8e-07 59.3 61 52.5
Zm00001eb058240 Zea mays HOM05D004032 ORTHO05D004462 6.1e-07 58.2 47 59.6
Zm00001eb134870 Zea mays HOM05D004032 ORTHO05D004462 5.2e-06 55.1 140 35.7
PSO063G5967 Papaver somniferum HOM05D007665 ORTHO05D008293 6.8e-06 54.7 59 52.5
Zm00001eb264720 Zea mays HOM05D036073 ORTHO05D004462 6.8e-06 54.7 158 29.1
Aqoxy7G02985 Aquilegia oxysepala HOM05D007665 ORTHO05D008293 8.9e-06 54.3 50 52.0


User provided reference genes

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