Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 4.1e-273 944.1 471 100.0
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 6.1e-237 823.9 474 86.9
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 6.0e-200 701.0 468 71.4
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 1.3e-199 699.9 464 72.0
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 4.2e-193 678.3 465 72.3
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 6.6e-191 671.0 467 70.9
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 8.7e-191 670.6 464 69.8
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 2.5e-190 669.1 464 70.7
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 1.3e-189 666.8 464 69.8
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 2.1e-189 666.0 464 70.3
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 1.4e-188 663.3 465 70.5
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.8e-188 662.9 465 69.9
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 5.3e-188 661.4 465 69.7
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 6.9e-188 661.0 465 69.9
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 2.6e-187 659.1 464 70.5
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 5.8e-187 657.9 464 68.8
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.7e-186 656.4 464 70.3
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 1.9e-185 652.9 468 70.3
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.4e-185 652.5 464 69.6
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 2.4e-185 652.5 464 70.0
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 5.4e-185 651.4 465 68.4
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 5.4e-185 651.4 464 67.9
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 5.4e-185 651.4 464 69.8
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 9.3e-185 650.6 468 68.6
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 9.3e-185 650.6 465 69.0
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 4.6e-184 648.3 464 69.6
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 1.0e-183 647.1 470 67.7
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 2.8e-181 639.0 467 68.3
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 3.7e-181 638.6 469 69.9
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 3.7e-181 638.6 470 66.8
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 8.1e-181 637.5 464 69.4
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 3.1e-180 635.6 466 67.4
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.2e-179 633.6 464 65.9
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 2.6e-179 632.5 464 65.7
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 5.8e-179 631.3 464 68.5
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 7.6e-179 630.9 465 68.0
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.7e-178 629.8 465 66.2
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 2.2e-178 629.4 464 67.0
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 2.9e-178 629.0 455 66.6
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 1.1e-177 627.1 479 66.4
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 1.4e-177 626.7 466 67.4
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 3.2e-177 625.5 474 65.4
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 4.2e-177 625.2 457 68.5
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 5.5e-177 624.8 468 64.7
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 9.3e-177 624.0 455 66.2
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 1.6e-176 623.2 451 69.0
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 3.5e-176 622.1 466 65.9
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 4.6e-176 621.7 458 66.8
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 5.6e-174 614.8 439 68.1
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 5.8e-171 604.7 458 65.9
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 5.5e-169 598.2 468 65.0
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 9.3e-169 597.4 469 63.8
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 1.6e-168 596.7 474 63.7
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 7.9e-168 594.3 471 63.3
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 3.9e-167 592.0 464 64.0
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 2.8e-165 585.9 461 62.7
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 1.1e-164 583.9 473 61.5
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 4.1e-164 582.0 465 62.2
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 3.8e-162 575.5 472 60.6
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 1.9e-161 573.2 472 61.7
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 1.2e-160 570.5 469 60.1
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 5.1e-159 565.1 476 59.2
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 5.1e-159 565.1 465 61.5
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 6.7e-159 564.7 459 63.2
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 2.5e-158 562.8 465 59.8
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 9.1e-156 554.3 458 62.0
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 1.5e-155 553.5 457 61.9
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 1.7e-154 550.1 471 59.7
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 1.1e-153 547.4 464 58.4
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 9.4e-153 544.3 458 60.3
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 9.4e-153 544.3 468 57.9
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 1.6e-152 543.5 461 57.7
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 3.0e-151 539.3 458 58.3
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 1.1e-150 537.3 466 59.0
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 5.7e-150 535.0 466 59.4
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 4.8e-149 531.9 471 59.0
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 8.2e-149 531.2 471 58.0
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 7.0e-148 528.1 457 58.6
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 6.5e-146 521.5 471 55.0
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 1.9e-145 520.0 477 55.8
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 7.2e-145 518.1 472 57.4
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 9.4e-145 517.7 466 56.9
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 1.8e-143 513.5 467 56.5
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 2.3e-143 513.1 466 56.7
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 6.7e-143 511.5 467 55.9
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 2.0e-142 510.0 466 54.9
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 4.4e-142 508.8 467 55.9
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 4.4e-142 508.8 479 56.4
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 5.7e-142 508.4 425 60.0
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 9.7e-142 507.7 466 56.7
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 9.7e-142 507.7 414 60.6
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 1.7e-141 506.9 466 56.4
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 2.2e-141 506.5 466 55.2
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 2.8e-141 506.1 467 57.4
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 3.7e-141 505.8 468 56.0
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 1.8e-140 503.4 466 55.8
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 2.4e-140 503.1 466 56.2
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 2.4e-140 503.1 467 55.0
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 5.3e-140 501.9 466 55.8
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 5.3e-140 501.9 468 57.3
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 7.0e-140 501.5 466 55.4
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 9.1e-140 501.1 466 56.0
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 1.0e-138 497.7 466 56.0
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 7.2e-137 491.5 466 54.3
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 2.1e-136 490.0 468 54.3
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 4.7e-136 488.8 472 53.6
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 8.0e-136 488.0 468 54.7
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 1.8e-135 486.9 468 54.1
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 4.0e-135 485.7 470 53.0
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 5.2e-135 485.3 468 54.3
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 6.7e-135 485.0 467 54.6
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 6.7e-135 485.0 467 54.6
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 5.7e-134 481.9 468 53.0
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 9.7e-134 481.1 401 59.1
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 2.2e-133 479.9 467 53.3
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 4.8e-133 478.8 467 53.3
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 8.2e-133 478.0 468 53.8
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 8.2e-133 478.0 468 53.8
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 1.1e-132 477.6 466 52.8
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 1.1e-132 477.6 466 54.1
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 1.4e-132 477.2 383 59.0
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 3.1e-132 476.1 471 52.9
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 4.1e-132 475.7 451 54.3
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 2.0e-131 473.4 468 51.9
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 2.0e-131 473.4 471 52.2
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 1.3e-130 470.7 471 52.4
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 6.5e-130 468.4 466 51.5
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 8.5e-130 468.0 474 51.9
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 8.5e-130 468.0 474 51.9
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 1.5e-129 467.2 464 52.4
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 4.2e-129 465.7 474 51.5
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 4.2e-129 465.7 475 50.3
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 3.6e-128 462.6 474 51.3
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 4.7e-128 462.2 456 53.7
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 8.0e-128 461.5 457 54.0
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 1.4e-127 460.7 427 54.6
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 4.0e-127 459.1 428 54.4
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 1.5e-126 457.2 468 50.2
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 2.2e-125 453.4 465 49.0
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 2.8e-125 453.0 468 51.7
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 6.3e-125 451.8 427 55.5
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 3.1e-124 449.5 329 68.4
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 3.1e-124 449.5 329 68.4
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 4.1e-124 449.1 452 49.8
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 1.6e-123 447.2 430 53.5
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 6.6e-114 415.2 436 48.2
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 3.7e-109 399.4 445 47.6
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 8.3e-101 371.7 477 45.7
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.1e-99 367.1 466 43.1
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 3.5e-99 366.3 466 42.5
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 8.6e-98 361.7 435 43.7
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.5e-97 360.9 457 41.8
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 3.9e-90 336.3 438 41.1
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 4.7e-88 329.3 353 50.4
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 4.2e-76 289.7 337 50.1
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 1.1e-71 275.0 206 67.0
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 5.3e-71 272.7 363 40.2
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.5e-65 254.6 203 61.1
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 4.8e-64 249.6 201 61.2
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 6.2e-64 249.2 201 61.2
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.2e-54 218.4 157 63.7
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 1.5e-49 201.4 164 62.8
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 3.4e-46 190.3 320 39.7
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 1.0e-45 188.7 220 48.2
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 7.0e-31 139.4 137 48.9
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 1.4e-26 125.2 294 34.0
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 8.5e-21 105.9 90 60.0
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 2.3e-18 97.8 86 59.3
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 3.7e-16 90.5 88 55.7
ATR0693G017 Amborella trichopoda HOM05D003903 ORTHO05D004828 1.0e-10 72.4 107 38.3
VMungo0540G2232 Vigna mungo HOM05D003903 ORTHO05D004828 6.8e-10 69.7 128 36.7
MBI02_g23015_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 9.8e-09 65.9 66 45.5
BcaC02g07345 Brassica carinata HOM05D003903 ORTHO05D091390 2.7e-06 57.8 95 37.9
SGA_v2.0_scaffold6G03305 Striga asiatica HOM05D037617 ORTHO05D399366 5.9e-06 56.6 40 60.0


User provided reference genes

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