Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 0.0e+00 1508.4 728 100.0
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.6e-292 1009.2 687 69.0
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 5.5e-285 984.2 713 66.3
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 5.1e-283 977.6 725 65.1
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 3.2e-277 958.4 729 63.9
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 2.1e-276 955.7 733 63.2
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 7.9e-276 953.7 724 64.2
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 1.8e-275 952.6 727 62.9
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 6.9e-272 940.6 729 63.4
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 4.5e-271 937.9 689 65.5
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 5.0e-270 934.5 730 61.9
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 4.2e-269 931.4 728 61.4
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 7.9e-268 927.2 745 61.2
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 2.2e-265 919.1 727 60.8
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 3.7e-265 918.3 683 64.1
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 4.1e-264 914.8 762 58.9
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 7.0e-264 914.1 735 60.1
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 9.1e-264 913.7 724 60.4
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 1.5e-261 906.4 685 63.9
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 2.5e-261 905.6 707 61.1
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 2.5e-261 905.6 727 60.5
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 4.2e-261 904.8 685 63.9
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 7.2e-261 904.0 731 60.7
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 7.2e-261 904.0 685 63.5
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 2.1e-260 902.5 727 61.2
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 2.7e-260 902.1 723 61.0
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 1.8e-259 899.4 720 60.0
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 3.0e-259 898.7 670 64.0
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 8.8e-259 897.1 730 60.5
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 2.6e-258 895.6 738 60.3
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 1.7e-257 892.9 703 61.2
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 5.3e-256 887.9 722 60.8
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 2.0e-255 885.9 722 61.1
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 2.0e-255 885.9 701 61.3
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 7.7e-255 884.0 724 59.3
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 2.2e-254 882.5 701 61.3
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.5e-253 879.8 748 58.8
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 1.5e-253 879.8 724 60.8
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 3.2e-253 878.6 721 59.9
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 2.7e-252 875.5 763 57.9
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 3.6e-252 875.2 727 59.0
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 4.7e-252 874.8 731 59.6
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 4.7e-252 874.8 706 60.9
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 1.0e-251 873.6 729 58.3
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 8.8e-251 870.5 685 62.3
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 4.4e-250 868.2 692 61.3
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 4.4e-250 868.2 707 60.4
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 2.2e-249 865.9 696 59.8
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 8.3e-249 864.0 671 61.5
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 1.1e-248 863.6 720 59.9
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 1.4e-248 863.2 722 59.6
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 7.0e-248 860.9 672 62.6
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 9.1e-248 860.5 696 59.5
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 1.6e-247 859.8 731 58.5
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 7.7e-247 857.4 732 58.3
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 2.9e-246 855.5 710 61.0
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 8.5e-246 854.0 672 62.1
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 1.5e-245 853.2 728 57.4
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 3.2e-245 852.0 893 51.3
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 5.5e-245 851.3 671 62.1
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 5.5e-245 851.3 617 66.8
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 6.1e-244 847.8 694 60.5
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 1.0e-243 847.0 684 60.4
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 2.0e-242 842.8 729 58.2
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 2.0e-242 842.8 688 59.3
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 2.0e-242 842.8 740 56.4
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 3.7e-241 838.6 704 58.2
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 5.4e-240 834.7 680 58.4
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 5.4e-240 834.7 740 55.9
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 3.5e-239 832.0 710 59.7
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 4.5e-239 831.6 737 54.3
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 5.9e-239 831.2 733 56.6
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 1.0e-238 830.5 681 58.1
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.1e-237 827.0 631 62.8
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 3.3e-237 825.5 612 64.1
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 9.5e-237 823.9 733 56.2
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.0e-235 820.5 733 55.7
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 6.8e-235 817.8 673 58.1
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 6.8e-235 817.8 593 66.6
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 1.5e-234 816.6 736 54.5
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 4.9e-233 811.6 678 58.7
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 1.4e-232 810.1 726 54.3
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 9.2e-232 807.4 701 56.3
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 7.3e-229 797.7 689 56.9
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 7.3e-229 797.7 743 54.4
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 2.2e-225 786.2 680 57.2
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 1.2e-223 780.4 726 53.7
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 2.7e-223 779.2 675 55.3
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.3e-222 776.9 680 55.4
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 5.0e-222 775.0 590 63.1
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 2.5e-221 772.7 693 54.4
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 4.3e-221 771.9 683 54.9
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 3.6e-220 768.8 679 54.8
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 1.1e-219 767.3 674 55.5
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.8e-219 766.5 726 52.9
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 2.3e-219 766.1 691 54.1
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 3.1e-219 765.8 686 54.5
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 6.8e-219 764.6 687 54.4
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 1.3e-217 760.4 744 51.9
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 3.7e-217 758.8 725 52.0
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.1e-216 757.3 728 54.3
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 1.2e-215 753.8 688 53.3
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 1.6e-215 753.4 699 53.9
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 2.7e-215 752.7 678 54.6
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 2.7e-215 752.7 678 54.6
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 4.6e-215 751.9 675 55.1
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 1.7e-214 750.0 682 52.9
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.7e-214 750.0 775 51.9
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 3.9e-214 748.8 716 54.6
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 6.6e-214 748.0 746 51.5
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 4.3e-213 745.3 732 52.0
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 8.9e-211 737.6 682 52.8
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.1e-208 730.7 687 52.4
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 3.2e-208 729.2 704 54.3
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 6.0e-207 724.9 680 52.9
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 3.0e-206 722.6 678 53.4
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 6.6e-206 721.5 681 54.9
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 2.8e-204 716.1 756 48.5
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.8e-203 713.4 667 54.7
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 3.1e-203 712.6 694 53.9
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 4.0e-203 712.2 721 51.0
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 5.4e-200 701.8 536 63.1
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 1.6e-199 700.3 681 53.2
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 1.9e-197 693.3 669 53.4
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 5.3e-195 685.3 729 49.2
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 1.4e-192 677.2 554 59.6
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 2.2e-185 653.3 728 49.2
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 8.2e-180 634.8 686 46.9
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 1.0e-177 627.9 691 48.6
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 1.0e-174 617.8 534 56.7
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 1.3e-174 617.5 680 49.1
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 1.2e-151 541.2 548 50.5
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 9.4e-136 488.4 341 64.5
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 2.6e-133 480.3 426 52.1
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 4.0e-126 456.4 383 57.4
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 3.5e-114 416.8 401 52.1
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 1.4e-110 404.8 391 52.9
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 5.8e-109 399.4 297 62.0
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 2.1e-103 380.9 406 44.6
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 2.0e-101 374.4 231 75.8
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 2.1e-95 354.4 583 35.5
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 6.2e-95 352.8 457 42.9
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 7.3e-88 329.3 312 50.0
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 1.4e-86 325.1 578 35.1
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 1.5e-85 321.6 546 34.6
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 9.9e-85 318.9 329 51.1
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 6.0e-66 256.5 209 59.8
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 6.2e-63 246.5 171 66.7
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 4.2e-59 233.8 251 52.6
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 2.9e-52 211.1 137 71.5
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 7.9e-50 203.0 219 47.9
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 9.1e-46 189.5 123 67.5
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 5.9e-45 186.8 223 46.6
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 1.9e-43 181.8 183 48.6
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 1.9e-43 181.8 209 45.9
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 2.5e-43 181.4 129 62.0
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 5.9e-37 160.2 386 27.7
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 2.9e-36 157.9 99 71.7
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 2.9e-36 157.9 99 71.7
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 2.9e-36 157.9 99 71.7
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 1.8e-33 148.7 138 54.3
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 8.2e-31 139.8 280 33.9
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 4.7e-26 124.0 252 32.1
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 1.5e-24 119.0 238 37.0
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 5.7e-24 117.1 253 31.6
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 5.7e-24 117.1 129 41.9
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 7.5e-24 116.7 146 43.2
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 1.2e-21 109.4 205 34.1
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 2.7e-18 98.2 76 61.8
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 1.7e-15 89.0 59 67.8
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 5.5e-11 73.9 48 62.5
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 5.5e-11 73.9 48 62.5
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 9.5e-11 73.2 54 66.7


User provided reference genes

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