Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI73G0051 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 3.3e-110 401.7 207 100.0
TWI09G0436 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 4.8e-77 291.6 172 90.1
CiPaw.08G181500 Carya illinoinensis HOM05D004607 ORTHO05D005836 1.6e-59 233.4 178 73.0
MD02G1117000 Malus domestica HOM05D004607 ORTHO05D005836 4.5e-59 231.9 167 71.3
RcHm_v2.0_Chr2g0097211 Rosa chinensis HOM05D004607 ORTHO05D005836 2.9e-58 229.2 170 70.6
MD02G1116800 Malus domestica HOM05D004607 ORTHO05D005836 1.1e-57 227.3 167 70.1
Prupe.7G182100 Prunus persica HOM05D004607 ORTHO05D005836 1.5e-57 226.9 171 71.3
FAN28G2666 Fragaria x ananassa HOM05D004607 ORTHO05D005836 7.2e-57 224.6 170 70.0
Dinv40187 Davidia involucrata HOM05D004607 ORTHO05D005836 9.4e-57 224.2 168 71.4
FvH4_1g10350 Fragaria vesca HOM05D004607 ORTHO05D005836 9.4e-57 224.2 170 69.4
Hma1.2p1_0300F.1_g118020 Hydrangea macrophylla HOM05D004607 ORTHO05D005836 2.7e-56 222.6 168 69.6
Potri.005G101300 Populus trichocarpa HOM05D004607 ORTHO05D005836 3.6e-56 222.2 176 68.2
Actinidia17362 Actinidia chinensis HOM05D004607 ORTHO05D005836 1.8e-55 219.9 168 69.6
CANSAT80G1685 Cannabis sativa HOM05D004607 ORTHO05D005836 2.0e-54 216.5 182 63.7
CANSAT80G2088 Cannabis sativa HOM05D004607 ORTHO05D005836 2.0e-54 216.5 182 63.7
Cpa.g.c27001.3 Carica papaya HOM05D004607 ORTHO05D005836 2.6e-54 216.1 172 68.6
CSS0013050 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 7.5e-54 214.5 168 67.3
CSS0035278 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 7.5e-54 214.5 168 67.3
Dinv08165 Davidia involucrata HOM05D004607 ORTHO05D005836 1.7e-53 213.4 167 68.9
Actinidia22900 Actinidia chinensis HOM05D004607 ORTHO05D005836 8.3e-53 211.1 168 67.3
CiPaw.07G003100 Carya illinoinensis HOM05D004607 ORTHO05D005836 3.1e-52 209.1 169 66.3
Cc07_g11810 Coffea canephora HOM05D004607 ORTHO05D005836 7.0e-52 208.0 168 65.5
Eucgr.I00568 Eucalyptus grandis HOM05D004607 ORTHO05D005836 1.2e-51 207.2 171 64.3
PGR042G1958 Punica granatum HOM05D004607 ORTHO05D005836 1.2e-51 207.2 169 63.3
GSVIVG01026644001 Vitis vinifera HOM05D004607 ORTHO05D005836 1.2e-51 207.2 167 67.1
Carub.0007s2507 Capsella rubella HOM05D004607 ORTHO05D005836 2.0e-51 206.5 170 62.9
AL7G38550 Arabidopsis lyrata HOM05D004607 ORTHO05D005836 5.9e-51 204.9 170 63.5
CsaV3_3G000280 Cucumis sativus L. HOM05D004607 ORTHO05D005836 1.0e-50 204.1 171 65.5
BolC8t48369H Brassica oleracea HOM05D004607 ORTHO05D005836 2.3e-50 203.0 168 61.3
BraA08t33239Z Brassica rapa HOM05D004607 ORTHO05D005836 2.3e-50 203.0 168 61.3
Thhalv10026376m.g Eutrema salsugineum HOM05D004607 ORTHO05D005836 2.9e-50 202.6 166 64.5
Sp7g14990 Schrenkiella parvula HOM05D004607 ORTHO05D005836 2.9e-50 202.6 170 62.9
CARHR222820 Cardamine hirsuta HOM05D004607 ORTHO05D005836 8.6e-50 201.1 170 60.6
Haze_04009 Corylus avellana HOM05D004607 ORTHO05D005836 1.1e-49 200.7 171 67.3
FAN26G2101 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.1e-49 200.7 197 59.4
Haze_03657 Corylus avellana HOM05D004607 ORTHO05D005836 1.9e-49 199.9 154 72.7
Haze_03663 Corylus avellana HOM05D004607 ORTHO05D005836 1.9e-49 199.9 154 72.7
Migut.C01149 Erythranthe guttata HOM05D004607 ORTHO05D005836 4.2e-49 198.7 168 61.3
AT4G16444 Arabidopsis thaliana HOM05D004607 ORTHO05D005836 5.5e-49 198.4 170 61.8
Nitab4.5_0011694g0010 Nicotiana tabacum HOM05D004607 ORTHO05D005836 7.2e-49 198.0 163 65.6
Peaxi162Scf01051g00133 Petunia axillaris HOM05D004607 ORTHO05D005836 7.2e-49 198.0 176 63.1
Migut.K01195 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.2e-48 197.2 168 60.7
Aa31LG2G12510 Aethionema arabicum HOM05D004607 ORTHO05D005836 2.1e-48 196.4 169 59.2
CAN.G1238.9 Capsicum annuum HOM05D004607 ORTHO05D005836 2.8e-48 196.1 163 64.4
BolC7t45311H Brassica oleracea HOM05D004607 ORTHO05D005836 3.6e-48 195.7 172 60.5
FvH4_1g10370 Fragaria vesca HOM05D004607 ORTHO05D005836 3.6e-48 195.7 184 60.9
Gorai.010G212400 Gossypium raimondii HOM05D004607 ORTHO05D005836 3.6e-48 195.7 166 63.9
Thecc.01G005800 Theobroma cacao HOM05D004607 ORTHO05D005836 8.0e-48 194.5 155 71.0
BcaC07g37988 Brassica carinata HOM05D004607 ORTHO05D005836 1.0e-47 194.1 169 60.4
Migut.G00971 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.0e-47 194.1 168 60.7
Solyc02g082710.3 Solanum lycopersicum HOM05D004607 ORTHO05D005836 1.0e-47 194.1 163 63.8
A03p49830 Brassica napus HOM05D004607 ORTHO05D005836 1.8e-47 193.4 173 59.5
BraA03t14078Z Brassica rapa HOM05D004607 ORTHO05D005836 1.8e-47 193.4 173 59.5
C07p47890 Brassica napus HOM05D004607 ORTHO05D005836 3.0e-47 192.6 173 60.7
Sopen02g027460 Solanum pennellii HOM05D004607 ORTHO05D005836 4.0e-47 192.2 163 63.2
Ca_02856_v3 Cicer arietinum L. HOM05D004607 ORTHO05D005836 5.2e-47 191.8 169 58.6
Nitab4.5_0000467g0060 Nicotiana tabacum HOM05D004607 ORTHO05D005836 6.8e-47 191.4 168 61.3
THA.LOC104819160 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 1.2e-46 190.7 168 60.1
Glyma.09G198400 Glycine max HOM05D004607 ORTHO05D005836 2.0e-46 189.9 169 59.8
A08p12190 Brassica napus HOM05D004607 ORTHO05D005836 3.4e-46 189.1 193 53.4
Ciclev10016602m.g Citrus clementina HOM05D004607 ORTHO05D005836 7.5e-46 188.0 158 66.5
Lsat_1_v5_gn_3_68061 Lactuca sativa HOM05D004607 ORTHO05D005836 4.9e-45 185.3 168 59.5
Medtr8g073600 Medicago truncatula HOM05D004607 ORTHO05D005836 4.9e-45 185.3 169 58.6
Duzib187G1597 Durio zibethinus HOM05D004607 ORTHO05D005836 1.1e-44 184.1 162 66.0
Sopen02g012590 Solanum pennellii HOM05D004607 ORTHO05D005836 1.8e-44 183.3 163 59.5
Lj4g0003075 Lotus japonicus HOM05D004607 ORTHO05D005836 2.4e-44 183.0 169 58.0
Solyc02g038815.1 Solanum lycopersicum HOM05D004607 ORTHO05D005836 3.1e-44 182.6 163 58.9
Lalb_Chr05g0229661 Lupinus albus HOM05D004607 ORTHO05D005836 7.0e-44 181.4 164 61.6
MSTRG.1461 Avicennia marina HOM05D004607 ORTHO05D005836 1.2e-43 180.6 164 60.4
vmacro23502 Vaccinium macrocarpon HOM05D004607 ORTHO05D005836 2.7e-43 179.5 150 66.7
THA.LOC104826422 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 5.9e-43 178.3 170 60.0
Nn2g14487 Nelumbo nucifera HOM05D004607 ORTHO05D005836 3.8e-42 175.6 166 55.4
Nitab4.5_0000702g0180 Nicotiana tabacum HOM05D004607 ORTHO05D005836 3.8e-42 175.6 158 62.0
Phvul.003G269900 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 5.6e-41 171.8 169 55.6
MBI11_g22240_MAGBIO Magnolia biondii HOM05D004607 ORTHO05D005836 7.3e-41 171.4 165 58.2
Lalb_Chr09g0324751 Lupinus albus HOM05D004607 ORTHO05D005836 9.5e-41 171.0 168 57.1
Sed0016741 Sechium edule HOM05D004607 ORTHO05D005836 1.6e-40 170.2 131 67.9
HanXRQChr16g0531851 Helianthus annuus HOM05D004607 ORTHO05D005836 2.8e-40 169.5 165 55.2
TAR628G0874 Trochodendron aralioides HOM05D004607 ORTHO05D005836 8.0e-40 167.9 149 61.7
ClCG10G000250 Citrullus lanatus HOM05D004607 ORTHO05D005836 1.0e-39 167.5 149 64.4
PGSC0003DMG400001520 Solanum tuberosum HOM05D004607 ORTHO05D005836 3.0e-39 166.0 147 62.6
Migut.M00637 Erythranthe guttata HOM05D004607 ORTHO05D005836 5.2e-39 165.2 133 62.4
Sabra05G0083700 Salix brachista HOM05D004607 ORTHO05D005836 1.2e-38 164.1 138 65.2
unitig_26.g9912 Utricularia gibba HOM05D004607 ORTHO05D005836 1.2e-38 164.1 168 53.0
Lalb_Chr05g0214781 Lupinus albus HOM05D004607 ORTHO05D005836 2.6e-38 162.9 168 54.2
Duzib264G0749 Durio zibethinus HOM05D004607 ORTHO05D005836 4.4e-38 162.2 139 66.9
BcaNung00194 Brassica carinata HOM05D004607 ORTHO05D005836 5.8e-38 161.8 170 53.5
TPR.G33861 Trifolium pratense HOM05D004607 ORTHO05D005836 5.8e-38 161.8 169 55.0
HanXRQChr09g0259831 Helianthus annuus HOM05D004607 ORTHO05D005836 9.8e-38 161.0 165 52.1
Glyma.11G085750 Glycine max HOM05D004607 ORTHO05D005836 1.3e-37 160.6 171 53.8
Psat0s2561g0240 Pisum sativum HOM05D004607 ORTHO05D005836 1.3e-37 160.6 168 54.8
Glyma.01G158900 Glycine max HOM05D004607 ORTHO05D005836 1.7e-37 160.2 168 54.2
Atru.chr8.743 Acer truncatum HOM05D004607 ORTHO05D005836 2.9e-37 159.5 132 66.7
Aqoxy5G01013 Aquilegia oxysepala HOM05D004607 ORTHO05D005836 2.9e-37 159.5 146 61.6
PSO210G1290 Papaver somniferum HOM05D004607 ORTHO05D005836 4.9e-37 158.7 168 54.2
PSO761G0125 Papaver somniferum HOM05D004607 ORTHO05D005836 4.9e-37 158.7 168 54.2
ECA246G3880 Erigeron canadensis HOM05D004607 ORTHO05D005836 6.4e-37 158.3 169 52.1
ATR0807G168 Amborella trichopoda HOM05D004607 ORTHO05D005836 7.0e-36 154.8 170 50.6
COL.COLO4_13415 Corchorus olitorius HOM05D004607 ORTHO05D005836 7.0e-36 154.8 132 66.7
Lj2g0013322 Lotus japonicus HOM05D004607 ORTHO05D005836 7.0e-36 154.8 166 52.4
Psat4g104720 Pisum sativum HOM05D004607 ORTHO05D026060 3.5e-35 152.5 149 55.7
Zm00001eb320900 Zea mays HOM05D004607 ORTHO05D005836 6.0e-35 151.8 165 53.3
Migut.N00197 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.3e-34 150.6 157 52.9
Sc16g0000240 Simmondsia chinensis HOM05D004607 ORTHO05D005836 1.7e-34 150.2 149 55.7
Phvul.002G116550 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 2.3e-34 149.8 164 51.2
CDE05G3414 Ceratophyllum demersum HOM05D004607 ORTHO05D005836 3.0e-34 149.4 131 61.8
Os06g0198700 Oryza sativa ssp. japonica HOM05D004607 ORTHO05D005836 3.9e-34 149.1 165 50.3
arahy.Tifrunner.gnm1.ann1.322DBQ Arachis hypogaea HOM05D004607 ORTHO05D005836 6.6e-34 148.3 167 49.1
arahy.Tifrunner.gnm1.ann1.WAU4HL Arachis hypogaea HOM05D004607 ORTHO05D005836 6.6e-34 148.3 167 49.1
SGA_v2.0_scaffold52G18984 Striga asiatica HOM05D004607 ORTHO05D005836 8.6e-34 147.9 137 56.9
QL06p052929 Quercus lobata HOM05D004607 ORTHO05D005836 9.5e-33 144.4 90 76.7
Manes.14G160966 Manihot esculenta HOM05D004607 ORTHO05D005836 1.2e-32 144.1 174 48.9
CDE05G1839 Ceratophyllum demersum HOM05D001594 ORTHO05D006997 2.1e-32 143.3 186 48.9
TPR.G21990 Trifolium pratense HOM05D004607 ORTHO05D005836 2.8e-32 142.9 168 46.4
Zm00001eb373950 Zea mays HOM05D004607 ORTHO05D005836 3.6e-32 142.5 165 49.1
MD15G1231800 Malus domestica HOM05D004607 ORTHO05D005836 4.7e-32 142.1 268 36.9
SalBow7G2290 Salvia bowleyana HOM05D004607 ORTHO05D005836 6.2e-32 141.7 207 45.9
EL10Ac3g05419 Beta vulgaris HOM05D004607 ORTHO05D005836 1.4e-31 140.6 151 51.7
Lsat_1_v5_gn_8_112021 Lactuca sativa HOM05D000005 ORTHO05D000012 1.4e-31 140.6 148 52.7
SalBow7G0705 Salvia bowleyana HOM05D004607 ORTHO05D005836 1.4e-31 140.6 214 43.9
AUR62031422 Chenopodium quinoa HOM05D004607 ORTHO05D005836 2.0e-30 136.7 150 51.3
SalBow7G4137 Salvia bowleyana HOM05D004607 ORTHO05D005836 3.4e-30 136.0 215 43.7
Rhsim10G0196300 Rhododendron simsii HOM05D004607 ORTHO05D005836 9.8e-30 134.4 110 64.5
AUR62021120 Chenopodium quinoa HOM05D004607 ORTHO05D005836 4.9e-29 132.1 159 49.1
HPP92_002453 Vanilla planifolia HOM05D004607 ORTHO05D005836 8.3e-29 131.3 173 48.0
unitig_749.g13934 Utricularia gibba HOM05D004607 ORTHO05D005836 1.6e-27 127.1 133 51.9
Nitab4.5_0001365g0040 Nicotiana tabacum HOM05D004607 ORTHO05D005836 2.7e-27 126.3 144 52.8
SGA_v2.0_scaffold24G10477 Striga asiatica HOM05D004607 ORTHO05D005836 1.7e-26 123.6 170 41.2
ECA232G4775 Erigeron canadensis HOM05D004607 ORTHO05D005836 1.1e-25 120.9 135 50.4
CSS0045229 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 7.3e-25 118.2 168 45.8
Hund00045 Selenicereus undatus HOM05D004607 ORTHO05D005836 7.3e-25 118.2 164 45.7
TAR376G0723 Trochodendron aralioides HOM05D004607 ORTHO05D005836 1.6e-24 117.1 109 61.5
Peaxi162Scf00580g00027 Petunia axillaris HOM05D004607 ORTHO05D005836 1.5e-22 110.5 167 43.7
PGSC0003DMG400017476 Solanum tuberosum HOM05D004607 ORTHO05D005836 3.4e-22 109.4 79 60.8
CAN.G328.18 Capsicum annuum HOM05D004607 ORTHO05D005836 9.9e-22 107.8 91 60.4
Mapoly0007s0238 Marchantia polymorpha HOM05D004607 ORTHO05D005836 3.9e-18 95.9 162 37.7
Duzib147G0723 Durio zibethinus HOM05D004607 ORTHO05D005836 5.6e-17 92.0 86 66.3
QL06p052933 Quercus lobata HOM05D004607 ORTHO05D005836 9.5e-17 91.3 88 69.3
MELO3C013722.2 Cucumis melo HOM05D004607 ORTHO05D005836 1.1e-15 87.8 79 67.1
Gohir.D06G180900 Gossypium hirsutum HOM05D004607 ORTHO05D005836 1.4e-15 87.4 79 64.6
AagrBONN_evm.TU.Sc2ySwM_362.230 Anthoceros agrestis HOM05D004607 ORTHO05D005836 4.0e-15 85.9 136 41.9
Gohir.A06G172006 Gossypium hirsutum HOM05D004607 ORTHO05D005836 1.2e-14 84.3 79 62.0
FAN23G1441 Fragaria x ananassa HOM05D004607 ORTHO05D005836 2.9e-13 79.7 80 61.2
VMungo1215G0163 Vigna mungo HOM05D004607 ORTHO05D005836 3.8e-13 79.3 110 50.9
Glyma.16G116500 Glycine max HOM05D004607 ORTHO05D005836 4.9e-13 79.0 87 56.3
Pp3c7_8860 Physcomitrium patens HOM05D004607 ORTHO05D005836 1.9e-12 77.0 162 35.2
Rhsim10G0196100 Rhododendron simsii HOM05D004607 ORTHO05D005836 1.6e-11 73.9 139 41.7
Cpa.g.sc117.83 Carica papaya HOM05D004607 ORTHO05D005836 3.5e-11 72.8 57 68.4
CBR_g18647 Chara braunii HOM05D004607 ORTHO05D005836 4.0e-07 59.3 165 30.3
VMungo0251G1148 Vigna mungo HOM05D004607 ORTHO05D005836 2.6e-06 56.6 59 55.9
FAN19G1486 Fragaria x ananassa HOM05D004607 ORTHO05D005836 4.4e-06 55.8 68 55.9


User provided reference genes

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