Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI63G1301 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 5.7e-52 207.2 98 100.0
TWI38G0894 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 4.2e-47 191.0 98 90.8
Thecc.01G232600 Theobroma cacao HOM05D005781 ORTHO05D006835 7.4e-44 180.3 98 83.7
Manes.02G161400 Manihot esculenta HOM05D005781 ORTHO05D006835 9.7e-44 179.9 98 83.7
Manes.01G244300 Manihot esculenta HOM05D005781 ORTHO05D006835 2.8e-43 178.3 98 81.6
COL.COLO4_20773 Corchorus olitorius HOM05D005781 ORTHO05D006835 8.2e-43 176.8 98 81.6
Duzib138G0305 Durio zibethinus HOM05D005781 ORTHO05D006835 1.1e-42 176.4 98 82.7
COL.COLO4_33816 Corchorus olitorius HOM05D005781 ORTHO05D006835 2.4e-42 175.3 98 79.6
Potri.001G082000 Populus trichocarpa HOM05D005781 ORTHO05D006835 3.1e-42 174.9 98 82.7
Ciclev10023034m.g Citrus clementina HOM05D005781 ORTHO05D006835 6.9e-42 173.7 98 80.6
CiPaw.06G025900 Carya illinoinensis HOM05D005781 ORTHO05D006835 1.5e-41 172.6 98 81.6
Gohir.D07G208300 Gossypium hirsutum HOM05D005781 ORTHO05D006835 2.6e-41 171.8 98 79.6
Gohir.A07G202100 Gossypium hirsutum HOM05D005781 ORTHO05D006835 3.4e-41 171.4 98 78.6
Gohir.A08G193000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 1.7e-40 169.1 98 75.5
Gorai.001G235000 Gossypium raimondii HOM05D005781 ORTHO05D006835 1.7e-40 169.1 98 77.6
Gohir.D08G211000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 3.8e-40 167.9 98 75.5
Gorai.004G223700 Gossypium raimondii HOM05D005781 ORTHO05D006835 3.8e-40 167.9 98 75.5
THA.LOC104825391 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 3.8e-40 167.9 98 73.5
Atru.chr1.3778 Acer truncatum HOM05D005781 ORTHO05D006835 5.0e-40 167.5 98 74.5
MD04G1200700 Malus domestica HOM05D005781 ORTHO05D006835 5.0e-40 167.5 97 77.3
PGR031G1812 Punica granatum HOM05D005781 ORTHO05D006835 8.5e-40 166.8 98 77.6
Cfa015971 Carpinus fangiana HOM05D005781 ORTHO05D006835 1.9e-39 165.6 96 79.2
MD12G1213200 Malus domestica HOM05D005781 ORTHO05D006835 1.9e-39 165.6 97 75.3
Prupe.6G320800 Prunus persica HOM05D005781 ORTHO05D006835 4.2e-39 164.5 98 75.5
Eucgr.D02385 Eucalyptus grandis HOM05D005781 ORTHO05D006835 6.1e-38 160.6 99 72.7
CANSAT54G0055 Cannabis sativa HOM05D005781 ORTHO05D006835 1.4e-37 159.5 98 72.4
Cpa.g.c32851 Carica papaya HOM05D005781 ORTHO05D006835 1.3e-35 152.9 86 81.4
RcHm_v2.0_Chr3g0455721 Rosa chinensis HOM05D005781 ORTHO05D006835 1.3e-35 152.9 98 69.4
Sed0027756 Sechium edule HOM05D005781 ORTHO05D006835 2.2e-35 152.1 95 72.6
ClCG05G000700 Citrullus lanatus HOM05D005781 ORTHO05D006835 2.8e-35 151.8 95 71.6
Sed0023332 Sechium edule HOM05D005781 ORTHO05D006835 3.7e-35 151.4 95 71.6
FAN05G5419 Fragaria x ananassa HOM05D006406 ORTHO05D007883 1.1e-34 149.8 98 68.4
FAN09G0731 Fragaria x ananassa HOM05D005781 ORTHO05D006835 1.1e-34 149.8 98 68.4
FAN14G3705 Fragaria x ananassa HOM05D006406 ORTHO05D007883 2.4e-34 148.7 98 67.3
Sabra01G0058900 Salix brachista HOM05D005781 ORTHO05D006835 2.4e-34 148.7 86 79.1
Glyma.05G129800 Glycine max HOM05D005781 ORTHO05D006835 3.1e-34 148.3 98 68.4
Glyma.08G084500 Glycine max HOM05D005781 ORTHO05D006835 3.1e-34 148.3 98 68.4
Atru.chr5.698 Acer truncatum HOM05D005781 ORTHO05D006835 6.9e-34 147.1 95 69.5
Lj4g0019743 Lotus japonicus HOM05D005781 ORTHO05D006835 6.9e-34 147.1 98 68.4
Lj4g0026259 Lotus japonicus HOM05D005781 ORTHO05D006835 6.9e-34 147.1 98 67.3
Dinv12261 Davidia involucrata HOM05D005781 ORTHO05D006835 1.5e-33 146.0 98 70.4
Ca_21653_v3 Cicer arietinum L. HOM05D005781 ORTHO05D006835 2.6e-33 145.2 98 65.3
arahy.Tifrunner.gnm1.ann1.EVJW84 Arachis hypogaea HOM05D005781 ORTHO05D006835 4.5e-33 144.4 98 67.3
Cfa011814 Carpinus fangiana HOM05D005781 ORTHO05D006835 1.7e-32 142.5 98 70.4
Haze_00504 Corylus avellana HOM05D005781 ORTHO05D006835 1.7e-32 142.5 86 76.7
Medtr4g115740 Medicago truncatula HOM05D005781 ORTHO05D006835 1.7e-32 142.5 98 65.3
Rhsim06G0009100 Rhododendron simsii HOM05D005781 ORTHO05D006835 2.2e-32 142.1 99 66.7
Lj3g0001466 Lotus japonicus HOM05D005781 ORTHO05D006835 2.9e-32 141.7 98 65.3
Nn6g33491 Nelumbo nucifera HOM05D005781 ORTHO05D006835 2.9e-32 141.7 98 68.4
Rhsim13G0061400 Rhododendron simsii HOM05D005781 ORTHO05D006835 3.8e-32 141.4 99 66.7
Nn8g40131 Nelumbo nucifera HOM05D005781 ORTHO05D006835 5.0e-32 141.0 98 66.3
MELO3C006010.2 Cucumis melo HOM05D005781 ORTHO05D006835 8.5e-32 140.2 107 61.7
CsaV3_3G007920 Cucumis sativus L. HOM05D005781 ORTHO05D006835 1.1e-31 139.8 107 62.6
Hund27185 Selenicereus undatus HOM05D005781 ORTHO05D006835 1.1e-31 139.8 100 66.0
THA.LOC104825885 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 1.1e-31 139.8 86 69.8
Gorai.009G291400 Gossypium raimondii HOM05D005781 ORTHO05D006835 1.4e-31 139.4 86 72.1
MBI09_g43998_MAGBIO Magnolia biondii HOM05D005781 ORTHO05D006835 1.4e-31 139.4 97 64.9
QL04p074672 Quercus lobata HOM05D005781 ORTHO05D006835 1.4e-31 139.4 95 67.4
Sopen07g026470 Solanum pennellii HOM05D005781 ORTHO05D006835 3.2e-31 138.3 98 63.3
Ah.04g154640 Amaranthus hybridus HOM05D005781 ORTHO05D006835 4.2e-31 137.9 100 63.0
Cc05_g05310 Coffea canephora HOM05D005781 ORTHO05D006835 5.5e-31 137.5 98 63.3
Psat4g033600 Pisum sativum HOM05D005781 ORTHO05D006835 5.5e-31 137.5 98 61.2
Lalb_Chr13g0300501 Lupinus albus HOM05D005781 ORTHO05D006835 9.4e-31 136.7 98 64.3
Aqoxy5G00270 Aquilegia oxysepala HOM05D005781 ORTHO05D006835 1.2e-30 136.3 97 63.9
Gohir.D05G278050 Gossypium hirsutum HOM05D005781 ORTHO05D006835 1.2e-30 136.3 86 70.9
ECA247G2075 Erigeron canadensis HOM05D005781 ORTHO05D006835 1.6e-30 136.0 99 65.7
Oeu052918.1 Olea europaea HOM05D005781 ORTHO05D006835 2.1e-30 135.6 98 69.4
Os01g0258600 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 4.7e-30 134.4 98 61.2
Phvul.002G194100 Phaseolus vulgaris HOM05D005781 ORTHO05D006835 1.8e-29 132.5 98 61.2
PGSC0003DMG400026192 Solanum tuberosum HOM05D005781 ORTHO05D006835 1.8e-29 132.5 98 60.2
Zm00001eb109340 Zea mays HOM05D005781 ORTHO05D006835 3.9e-29 131.3 98 61.2
CDE02G0151 Ceratophyllum demersum HOM05D005781 ORTHO05D006835 6.7e-29 130.6 98 59.2
Sc01g0002510 Simmondsia chinensis HOM05D005781 ORTHO05D006835 6.7e-29 130.6 98 60.2
EL10Ac7g17336 Beta vulgaris HOM05D005781 ORTHO05D006835 8.8e-29 130.2 99 63.6
Lsat_1_v5_gn_9_14361 Lactuca sativa HOM05D005781 ORTHO05D006835 1.1e-28 129.8 99 63.6
Oeu034339.1 Olea europaea HOM05D005781 ORTHO05D006835 1.1e-28 129.8 98 64.3
Gohir.A05G276166 Gossypium hirsutum HOM05D005781 ORTHO05D006835 2.6e-28 128.6 86 67.4
Migut.H01206 Erythranthe guttata HOM05D005781 ORTHO05D006835 3.3e-28 128.3 98 64.3
vmacro02893 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 3.3e-28 128.3 97 62.9
Peaxi162Scf00007g01414 Petunia axillaris HOM05D005781 ORTHO05D006835 5.7e-28 127.5 86 64.0
RcHm_v2.0_Chr1g0322091 Rosa chinensis HOM05D005781 ORTHO05D006835 5.7e-28 127.5 84 66.7
arahy.Tifrunner.gnm1.ann1.V38LZ0 Arachis hypogaea HOM05D005781 ORTHO05D006835 1.3e-27 126.3 134 49.3
Hma1.2p1_0841F.1_g227020 Hydrangea macrophylla HOM05D005781 ORTHO05D006835 2.2e-27 125.6 87 70.1
DCAR_022248 Daucus carota HOM05D005781 ORTHO05D006835 3.7e-27 124.8 99 61.6
Dinv36923 Davidia involucrata HOM05D005781 ORTHO05D006835 3.7e-27 124.8 86 69.8
Nitab4.5_0001134g0180 Nicotiana tabacum HOM05D005781 ORTHO05D006835 3.7e-27 124.8 94 57.4
DCAR_003312 Daucus carota HOM05D005781 ORTHO05D006835 6.3e-27 124.0 99 61.6
CSS0033648 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 1.4e-26 122.9 86 67.4
Haze_11591 Corylus avellana HOM05D005781 ORTHO05D006835 2.4e-26 122.1 75 76.0
TPR.G40143 Trifolium pratense HOM05D005781 ORTHO05D006835 5.3e-26 120.9 86 62.8
CSS0000543 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 9.1e-26 120.2 86 66.3
Thhalv10015111m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 5.9e-25 117.5 100 56.0
BcaB07g31735 Brassica carinata HOM05D005781 ORTHO05D006835 7.7e-25 117.1 99 55.6
Medtr5g009535 Medicago truncatula HOM05D005781 ORTHO05D006835 7.7e-25 117.1 86 61.6
Nitab4.5_0003429g0070 Nicotiana tabacum HOM05D005781 ORTHO05D006835 7.7e-25 117.1 92 55.4
Nitab4.5_0008807g0010 Nicotiana tabacum HOM05D005781 ORTHO05D006835 1.7e-24 115.9 86 59.3
vmacro12515 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 2.9e-24 115.2 88 62.5
Atru.chr1.3777 Acer truncatum HOM05D005781 ORTHO05D006835 6.5e-24 114.0 96 60.4
Thhalv10022933m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 6.5e-24 114.0 102 56.9
Sp6g27160 Schrenkiella parvula HOM05D005781 ORTHO05D006835 1.1e-23 113.2 101 55.4
Solyc07g052913.1 Solanum lycopersicum HOM05D005781 ORTHO05D006835 1.9e-23 112.5 88 58.0
Os06g0184100 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 4.2e-23 111.3 87 59.8
A03p08090 Brassica napus HOM05D005781 ORTHO05D006835 9.4e-23 110.2 105 53.3
BolC3t13430H Brassica oleracea HOM05D005781 ORTHO05D006835 1.2e-22 109.8 105 52.4
unitig_0.g2200 Utricularia gibba HOM05D005781 ORTHO05D006835 1.2e-22 109.8 93 54.8
SalBow1G0716 Salvia bowleyana HOM05D005781 ORTHO05D006835 1.6e-22 109.4 98 52.0
AT5G16950 Arabidopsis thaliana HOM05D005781 ORTHO05D006835 2.7e-22 108.6 100 51.0
BraA03t10134Z Brassica rapa HOM05D005781 ORTHO05D006835 2.7e-22 108.6 104 52.9
BcaB01g04964 Brassica carinata HOM05D005781 ORTHO05D006835 1.0e-21 106.7 102 52.9
AL6G27950 Arabidopsis lyrata HOM05D005781 ORTHO05D006835 3.0e-21 105.1 103 50.5
CARHR196210 Cardamine hirsuta HOM05D005781 ORTHO05D006835 5.2e-21 104.4 102 52.0
BcaB01g05237 Brassica carinata HOM05D005781 ORTHO05D006835 2.0e-20 102.4 107 47.7
Aa31LG11G12650 Aethionema arabicum HOM05D005781 ORTHO05D006835 2.6e-20 102.1 105 52.4
C03p09360 Brassica napus HOM05D005781 ORTHO05D006835 3.3e-20 101.7 109 46.8
Zm00001eb374690 Zea mays HOM05D005781 ORTHO05D006835 4.4e-20 101.3 69 62.3
Carub.0006s1516 Capsella rubella HOM05D005781 ORTHO05D006835 5.7e-20 100.9 104 50.0
HanXRQChr08g0228461 Helianthus annuus HOM05D005781 ORTHO05D006835 1.1e-18 96.7 58 72.4
Rhsim06G0009300 Rhododendron simsii HOM05D005781 ORTHO05D006835 4.1e-18 94.7 75 60.0
ATR0626G090 Amborella trichopoda HOM05D005781 ORTHO05D006835 5.3e-18 94.4 83 53.0
VMungo0251G3003 Vigna mungo HOM05D005781 ORTHO05D006835 1.3e-16 89.7 75 56.0
Actinidia11611 Actinidia chinensis HOM05D005781 ORTHO05D006835 5.5e-15 84.3 60 66.7
SalBow1G0213 Salvia bowleyana HOM05D005781 ORTHO05D006835 7.2e-15 84.0 83 47.0
SGA_v2.0_scaffold57G20299 Striga asiatica HOM05D005781 ORTHO05D006835 1.6e-14 82.8 82 46.3
A09p11320 Brassica napus HOM05D005781 ORTHO05D006835 6.1e-14 80.9 91 47.3
BraA09t36770Z Brassica rapa HOM05D005781 ORTHO05D006835 6.1e-14 80.9 91 47.3
RcHm_v2.0_Chr1g0326231 Rosa chinensis HOM05D005781 ORTHO05D006835 1.5e-12 76.3 70 58.6
Zm00001eb217150 Zea mays HOM05D000360 ORTHO05D006835 5.4e-10 67.8 53 52.8
Pp3c9_710 Physcomitrium patens HOM05D005781 ORTHO05D006835 3.5e-09 65.1 53 50.9
Zm00001eb352440 Zea mays HOM05D000360 ORTHO05D006835 3.5e-09 65.1 53 50.9
C09p13330 Brassica napus HOM05D005781 ORTHO05D006835 5.9e-09 64.3 78 43.6
BolC9t54226H Brassica oleracea HOM05D005781 ORTHO05D006835 5.9e-09 64.3 78 43.6
Lalb_Chr07g0188641 Lupinus albus HOM05D005781 ORTHO05D006835 2.9e-08 62.0 51 54.9
Mapoly0010s0158 Marchantia polymorpha HOM05D005781 ORTHO05D006835 5.0e-08 61.2 62 43.5
COL.COLO4_22630 Corchorus olitorius HOM05D005781 ORTHO05D006835 1.9e-07 59.3 33 81.8
BcaC04g22979 Brassica carinata HOM05D005781 ORTHO05D006835 2.5e-07 58.9 49 49.0
BcaB01g05235 Brassica carinata HOM05D005781 ORTHO05D006835 2.1e-06 55.8 39 59.0
CBR_g25869 Chara braunii HOM05D005781 ORTHO05D006835 8.0e-06 53.9 81 37.0


User provided reference genes

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