Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI63G0908 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 2.0e-80 302.8 200 100.0
TAR636G2398 Trochodendron aralioides HOM05D004131 ORTHO05D004778 3.5e-56 222.2 200 74.5
TWI38G2196 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 1.1e-54 217.2 200 80.0
Atru.chr4.1513 Acer truncatum HOM05D004131 ORTHO05D004778 2.5e-54 216.1 211 75.4
Potri.017G010100 Populus trichocarpa HOM05D004131 ORTHO05D004778 3.2e-54 215.7 200 78.0
Ciclev10022332m.g Citrus clementina HOM05D004131 ORTHO05D004778 2.3e-52 209.5 200 77.0
Migut.G00833 Erythranthe guttata HOM05D004131 ORTHO05D004778 5.2e-52 208.4 201 77.1
GSVIVG01038193001 Vitis vinifera HOM05D004131 ORTHO05D004778 5.2e-52 208.4 114 92.1
Duzib268G1863 Durio zibethinus HOM05D004131 ORTHO05D004778 1.2e-51 207.2 123 85.4
Dinv33225 Davidia involucrata HOM05D004131 ORTHO05D004778 3.4e-51 205.7 124 83.9
Nn7g37517 Nelumbo nucifera HOM05D004131 ORTHO05D004778 4.4e-51 205.3 202 76.2
Manes.01G017500 Manihot esculenta HOM05D004131 ORTHO05D004778 5.7e-51 204.9 200 78.0
Sabra07G0117600 Salix brachista HOM05D004131 ORTHO05D004778 7.5e-51 204.5 200 73.5
Cfa021469 Carpinus fangiana HOM05D004131 ORTHO05D004778 2.2e-50 203.0 200 75.5
Migut.N03052 Erythranthe guttata HOM05D004131 ORTHO05D004778 2.8e-50 202.6 200 68.5
Gorai.011G132700 Gossypium raimondii HOM05D004131 ORTHO05D004778 2.8e-50 202.6 113 92.0
Sabra07G0113200 Salix brachista HOM05D004131 ORTHO05D004778 2.8e-50 202.6 200 72.5
Potri.007G139900 Populus trichocarpa HOM05D004131 ORTHO05D004778 3.7e-50 202.2 200 73.5
Dinv18309 Davidia involucrata HOM05D004131 ORTHO05D004778 4.8e-50 201.8 114 91.2
Gohir.A10G146200 Gossypium hirsutum HOM05D004131 ORTHO05D004778 6.3e-50 201.4 113 91.2
Gohir.D10G120800 Gossypium hirsutum HOM05D004131 ORTHO05D004778 6.3e-50 201.4 113 91.2
Lalb_Chr16g0384341 Lupinus albus HOM05D004131 ORTHO05D004778 2.4e-49 199.5 200 75.0
Lj4g0014155 Lotus japonicus HOM05D004131 ORTHO05D004778 7.0e-49 198.0 199 73.9
Ca_18622_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 1.2e-48 197.2 198 73.7
Ca_18628_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 1.2e-48 197.2 198 73.7
Aqoxy2G04165 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 3.5e-48 195.7 200 72.0
CSS0004184 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 3.5e-48 195.7 200 74.5
MSTRG.24561 Avicennia marina HOM05D004131 ORTHO05D004778 5.9e-48 194.9 200 72.0
ECA130G0002 Erigeron canadensis HOM05D004131 ORTHO05D004778 5.9e-48 194.9 124 77.4
Sabra17G0009400 Salix brachista HOM05D004131 ORTHO05D004778 7.7e-48 194.5 148 73.0
unitig_8.g3637 Utricularia gibba HOM05D004131 ORTHO05D004778 7.7e-48 194.5 111 88.3
FvH4_1g00470 Fragaria vesca HOM05D004131 ORTHO05D004778 1.0e-47 194.1 111 87.4
PSO675G2278 Papaver somniferum HOM05D004131 ORTHO05D004778 1.0e-47 194.1 114 86.0
CSS0028329 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 1.3e-47 193.7 200 74.0
FAN28G1052 Fragaria x ananassa HOM05D004131 ORTHO05D004778 2.9e-47 192.6 111 86.5
MD02G1003900 Malus domestica HOM05D004131 ORTHO05D004778 2.9e-47 192.6 201 73.6
Actinidia18408 Actinidia chinensis HOM05D004131 ORTHO05D004778 3.8e-47 192.2 200 70.5
Lj6C265T11 Lonicera japonica HOM05D004131 ORTHO05D004778 3.8e-47 192.2 201 69.7
Haze_11173 Corylus avellana HOM05D004131 ORTHO05D004778 6.5e-47 191.4 202 73.3
Haze_11178 Corylus avellana HOM05D004131 ORTHO05D004778 6.5e-47 191.4 202 73.3
COL.COLO4_04655 Corchorus olitorius HOM05D004131 ORTHO05D004778 8.6e-47 191.0 111 89.2
MELO3C022231.2 Cucumis melo HOM05D004131 ORTHO05D004778 8.6e-47 191.0 125 78.4
Duzib212G0438 Durio zibethinus HOM05D004131 ORTHO05D004778 8.6e-47 191.0 200 74.0
CsaV3_5G040580 Cucumis sativus L. HOM05D004131 ORTHO05D004778 1.1e-46 190.7 202 70.3
PSO017G4173 Papaver somniferum HOM05D004131 ORTHO05D004778 1.5e-46 190.3 225 65.3
FAN26G1335 Fragaria x ananassa HOM05D004131 ORTHO05D004778 4.2e-46 188.7 109 87.2
RcHm_v2.0_Chr2g0084981 Rosa chinensis HOM05D004131 ORTHO05D004778 5.5e-46 188.3 107 87.9
FAN23G0024 Fragaria x ananassa HOM05D004131 ORTHO05D004778 9.5e-46 187.6 107 87.9
MD15G1147200 Malus domestica HOM05D004131 ORTHO05D004778 9.5e-46 187.6 107 87.9
HanXRQChr02g0059071 Helianthus annuus HOM05D004131 ORTHO05D004778 1.2e-45 187.2 104 89.4
Solyc12g019470.2 Solanum lycopersicum HOM05D004131 ORTHO05D004778 2.1e-45 186.4 201 71.1
TPR.G23549 Trifolium pratense HOM05D004131 ORTHO05D004778 2.1e-45 186.4 108 85.2
TAR362G1052 Trochodendron aralioides HOM05D004131 ORTHO05D004778 2.1e-45 186.4 111 84.7
Ah.13g073340 Amaranthus hybridus HOM05D004131 ORTHO05D004778 2.8e-45 186.0 111 83.8
Glyma.02G138900 Glycine max HOM05D004131 ORTHO05D004778 2.8e-45 186.0 115 79.1
Glyma.07G206100 Glycine max HOM05D004131 ORTHO05D004778 2.8e-45 186.0 111 82.9
Phvul.003G059400 Phaseolus vulgaris HOM05D004131 ORTHO05D004778 2.8e-45 186.0 108 86.1
ATR0743G176 Amborella trichopoda HOM05D004131 ORTHO05D004778 4.7e-45 185.3 110 84.5
Prupe.7G267400 Prunus persica HOM05D004131 ORTHO05D004778 4.7e-45 185.3 207 70.5
Nitab4.5_0000064g0030 Nicotiana tabacum HOM05D004131 ORTHO05D004778 1.0e-44 184.1 105 87.6
Nitab4.5_0005089g0010 Nicotiana tabacum HOM05D004131 ORTHO05D004778 1.0e-44 184.1 105 87.6
Psat7g119160 Pisum sativum HOM05D004131 ORTHO05D004778 1.0e-44 184.1 106 85.8
CAN.G448.4 Capsicum annuum HOM05D004131 ORTHO05D004778 1.8e-44 183.3 104 87.5
Sopen12g009750 Solanum pennellii HOM05D004131 ORTHO05D004778 1.8e-44 183.3 200 70.0
Lsat_1_v5_gn_7_67880 Lactuca sativa HOM05D004131 ORTHO05D004778 2.3e-44 183.0 206 66.5
CDE08G0022 Ceratophyllum demersum HOM05D004131 ORTHO05D004778 4.0e-44 182.2 210 61.9
Lalb_Chr05g0218801 Lupinus albus HOM05D004131 ORTHO05D004778 4.0e-44 182.2 200 70.5
Peaxi162Scf00483g00111 Petunia axillaris HOM05D004131 ORTHO05D004778 4.0e-44 182.2 104 87.5
Actinidia28972 Actinidia chinensis HOM05D004131 ORTHO05D004778 5.2e-44 181.8 103 91.3
HPP92_023727 Vanilla planifolia HOM05D004131 ORTHO05D004778 6.8e-44 181.4 123 75.6
ECA233G3286 Erigeron canadensis HOM05D004131 ORTHO05D004778 8.9e-44 181.0 105 85.7
THA.LOC104804159 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 8.9e-44 181.0 106 86.8
C04p32910 Brassica napus HOM05D004131 ORTHO05D004778 1.2e-43 180.6 200 66.0
A04p02020 Brassica napus HOM05D004131 ORTHO05D004778 2.6e-43 179.5 200 66.0
Thhalv10006256m.g Eutrema salsugineum HOM05D004131 ORTHO05D004778 3.4e-43 179.1 113 82.3
SalBow3G2571 Salvia bowleyana HOM05D004131 ORTHO05D004778 3.4e-43 179.1 103 85.4
SalBow6G7192 Salvia bowleyana HOM05D004131 ORTHO05D004778 3.4e-43 179.1 200 71.0
CiPaw.01G198800 Carya illinoinensis HOM05D004131 ORTHO05D004778 4.4e-43 178.7 202 72.3
Cc03_g14990 Coffea canephora HOM05D004131 ORTHO05D004778 4.4e-43 178.7 111 82.0
Medtr4g087630 Medicago truncatula HOM05D004131 ORTHO05D004778 4.4e-43 178.7 198 69.2
CiPaw.02G123300 Carya illinoinensis HOM05D004131 ORTHO05D004778 5.7e-43 178.3 200 71.0
BcaC02g10087 Brassica carinata HOM05D004131 ORTHO05D004778 7.5e-43 177.9 200 66.5
BraA04t15927Z Brassica rapa HOM05D004131 ORTHO05D004778 9.8e-43 177.6 203 66.5
CANSAT56G2001 Cannabis sativa HOM05D004131 ORTHO05D004778 1.3e-42 177.2 206 68.4
THA.LOC104805841 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 1.3e-42 177.2 106 84.9
PGSC0003DMG400005367 Solanum tuberosum HOM05D004131 ORTHO05D004778 1.7e-42 176.8 200 68.5
BcaB02g08209 Brassica carinata HOM05D004131 ORTHO05D004778 2.8e-42 176.0 200 69.5
CSS0000211 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 2.8e-42 176.0 103 86.4
CSS0046112 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 2.8e-42 176.0 103 86.4
Sp5g03340 Schrenkiella parvula HOM05D004131 ORTHO05D004778 2.8e-42 176.0 200 70.5
MBI07_g36705_MAGBIO Magnolia biondii HOM05D004131 ORTHO05D004778 3.7e-42 175.6 203 70.0
AL5G41850 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 4.9e-42 175.3 113 79.6
Sc13g0007290 Simmondsia chinensis HOM05D004131 ORTHO05D004778 6.3e-42 174.9 101 86.1
Carub.0004s2633 Capsella rubella HOM05D004131 ORTHO05D004778 8.3e-42 174.5 106 82.1
Aa31LG10G14050 Aethionema arabicum HOM05D004131 ORTHO05D004778 2.4e-41 172.9 200 68.0
AT3G59800 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 3.1e-41 172.6 200 69.5
BolC4t24854H Brassica oleracea HOM05D004131 ORTHO05D004778 3.1e-41 172.6 107 80.4
Eucgr.G01598 Eucalyptus grandis HOM05D004131 ORTHO05D004778 3.1e-41 172.6 101 84.2
Eucgr.L00027 Eucalyptus grandis HOM05D004131 ORTHO05D004778 3.1e-41 172.6 101 84.2
THA.LOC104802336 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 3.1e-41 172.6 105 82.9
EL10Ac3g06119 Beta vulgaris HOM05D004131 ORTHO05D004778 5.4e-41 171.8 104 83.7
Hund12374 Selenicereus undatus HOM05D004131 ORTHO05D004778 7.0e-41 171.4 103 81.6
Sp4g25870 Schrenkiella parvula HOM05D004131 ORTHO05D004778 3.5e-40 169.1 202 67.3
CARHR138980 Cardamine hirsuta HOM05D004131 ORTHO05D004778 1.7e-39 166.8 205 64.9
BcaB02g08900 Brassica carinata HOM05D004131 ORTHO05D004778 2.9e-39 166.0 108 77.8
BcaC02g12362 Brassica carinata HOM05D004131 ORTHO05D004778 2.9e-39 166.0 108 77.8
C04p04750 Brassica napus HOM05D004131 ORTHO05D004778 2.9e-39 166.0 108 77.8
Zm00001eb425720 Zea mays HOM05D004131 ORTHO05D004778 2.9e-39 166.0 105 81.9
Ah.07g202990 Amaranthus hybridus HOM05D004131 ORTHO05D004778 3.8e-39 165.6 102 80.4
BolC4t22105H Brassica oleracea HOM05D004131 ORTHO05D004778 5.0e-39 165.2 112 75.9
arahy.Tifrunner.gnm1.ann1.GY80IK Arachis hypogaea HOM05D004131 ORTHO05D004778 6.6e-39 164.9 135 68.9
AUR62002422 Chenopodium quinoa HOM05D004131 ORTHO05D004778 1.9e-38 163.3 115 73.9
AUR62023766 Chenopodium quinoa HOM05D004131 ORTHO05D004778 2.5e-38 162.9 117 73.5
A05p04000 Brassica napus HOM05D004131 ORTHO05D004778 4.3e-38 162.2 106 77.4
BraA05t19388Z Brassica rapa HOM05D004131 ORTHO05D004778 4.3e-38 162.2 106 77.4
Mapoly0055s0100 Marchantia polymorpha HOM05D004131 ORTHO05D004778 3.4e-35 152.5 113 69.0
Lju470A13T20 Lonicera japonica HOM05D004131 ORTHO05D004778 7.5e-35 151.4 188 49.5
VMungo0251G3663 Vigna mungo HOM05D004131 ORTHO05D004778 7.5e-35 151.4 171 73.7
AagrBONN_evm.TU.Sc2ySwM_344.2765 Anthoceros agrestis HOM05D004131 ORTHO05D004778 1.3e-34 150.6 120 65.8
vmacro15701 Vaccinium macrocarpon HOM05D004131 ORTHO05D004778 6.4e-34 148.3 165 53.9
Pp3c3_18840 Physcomitrium patens HOM05D004131 ORTHO05D004778 2.4e-33 146.4 118 67.8
PGR042G3815 Punica granatum HOM05D004131 ORTHO05D004778 3.0e-31 139.4 80 88.8
SMO364G0381 Selaginella moellendorffii HOM05D004131 ORTHO05D004778 3.9e-31 139.0 116 62.9
Lju470A13G17 Lonicera japonica HOM05D004131 ORTHO05D004778 1.9e-30 136.7 80 85.0
Aqoxy604s001 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 4.3e-30 135.6 124 62.1
Rhsim02G0086100 Rhododendron simsii HOM05D004131 ORTHO05D004778 4.3e-30 135.6 191 45.5
Sed0002263 Sechium edule HOM05D004131 ORTHO05D004778 5.6e-30 135.2 84 81.0
Actinidia11437 Actinidia chinensis HOM05D004131 ORTHO05D004778 2.3e-28 129.8 71 88.7
AT2G43795 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 4.4e-27 125.6 88 73.9
AL4G42670 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 1.3e-26 124.0 88 72.7
RhsimUnG0015600 Rhododendron simsii HOM05D004131 ORTHO05D004778 3.7e-26 122.5 225 38.7
QL10p058548 Quercus lobata HOM05D004131 ORTHO05D004778 7.0e-25 118.2 65 87.7
QL10p059325 Quercus lobata HOM05D004131 ORTHO05D004778 7.0e-25 118.2 65 87.7
SEGI_19170 Sequoiadendron giganteum HOM05D004131 ORTHO05D004778 1.2e-24 117.5 95 65.3
CARHR170140 Cardamine hirsuta HOM05D004131 ORTHO05D004778 1.5e-22 110.5 161 66.5
Lj6C255T9 Lonicera japonica HOM05D004131 ORTHO05D004778 3.6e-21 105.9 165 61.2
BcaC07g40454 Brassica carinata HOM05D004131 ORTHO05D004778 6.8e-20 101.7 81 67.9
Oeu050314.3 Olea europaea HOM05D004131 ORTHO05D004778 1.5e-19 100.5 231 50.6
ClCG08G000030 Citrullus lanatus HOM05D004131 ORTHO05D004778 3.4e-19 99.4 111 56.8
CBR_g6538 Chara braunii HOM05D004131 ORTHO05D004778 1.3e-18 97.4 72 65.3
BraA09t40640Z Brassica rapa HOM05D004131 ORTHO05D004778 4.9e-18 95.5 82 62.2
Cre16.g660850 Chlamydomonas reinhardtii HOM05D004131 ORTHO05D004778 8.3e-18 94.7 114 50.0
BcaB02g08224 Brassica carinata HOM05D004131 ORTHO05D004778 3.2e-17 92.8 155 49.7
QL10p058544 Quercus lobata HOM05D004131 ORTHO05D004778 6.0e-16 88.6 61 75.4
SGA_v2.0_scaffold37G14924 Striga asiatica HOM05D004131 ORTHO05D004778 7.8e-16 88.2 252 45.6
C08p34760 Brassica napus HOM05D004131 ORTHO05D004778 1.3e-15 87.4 171 39.2
BolC8t51078H Brassica oleracea HOM05D004131 ORTHO05D004778 1.3e-15 87.4 171 39.2
MSTRG.9725 Avicennia marina HOM05D005043 ORTHO05D000110 1.9e-14 83.6 106 52.8
Thecc.04G162100 Theobroma cacao HOM05D004131 ORTHO05D004778 5.6e-14 82.0 140 68.6
BcaC07g40508 Brassica carinata HOM05D004131 ORTHO05D004778 9.5e-14 81.3 77 58.4
QL10p059329 Quercus lobata HOM05D004131 ORTHO05D004778 3.4e-11 72.8 137 65.7
Lju470A13T22 Lonicera japonica HOM05D004131 ORTHO05D004778 7.6e-11 71.6 51 74.5
Sed0017538 Sechium edule HOM05D004131 ORTHO05D004778 2.9e-10 69.7 34 88.2
BcaC07g40452 Brassica carinata HOM05D004131 ORTHO05D004778 4.6e-08 62.4 45 75.6
BcaB02g07200 Brassica carinata HOM05D004131 ORTHO05D004778 1.3e-07 60.8 137 54.7
Carub.0005s2652 Capsella rubella HOM05D004131 ORTHO05D004778 3.9e-07 59.3 40 80.0
Lalb_Chr23g0275001 Lupinus albus HOM05D004131 ORTHO05D004778 6.6e-07 58.5 133 42.1
Zm00001eb027620 Zea mays HOM05D002020 ORTHO05D002046 4.3e-06 55.8 39 74.4


User provided reference genes

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