Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI63G0695 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 9.9e-56 219.9 115 100.0
TWI38G0392 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 6.2e-34 147.5 113 77.9
Manes.07G093500 Manihot esculenta HOM05D005304 ORTHO05D004438 1.5e-19 99.8 120 55.0
Manes.10G053300 Manihot esculenta HOM05D005304 ORTHO05D004438 1.1e-17 93.6 105 53.3
MELO3C019852.2 Cucumis melo HOM05D005304 ORTHO05D004438 4.1e-17 91.7 109 54.1
CsaV3_2G032750 Cucumis sativus L. HOM05D005304 ORTHO05D004438 4.1e-17 91.7 109 54.1
Manes.10G053200 Manihot esculenta HOM05D005304 ORTHO05D004438 1.5e-16 89.7 109 54.1
Potri.008G029600 Populus trichocarpa HOM05D005304 ORTHO05D004438 1.5e-16 89.7 117 51.3
Duzib128G0830 Durio zibethinus HOM05D005304 ORTHO05D004438 2.6e-16 89.0 114 48.2
Potri.010G231600 Populus trichocarpa HOM05D005304 ORTHO05D004438 2.6e-16 89.0 117 51.3
Duzib128G0918 Durio zibethinus HOM05D005304 ORTHO05D004438 3.4e-16 88.6 114 48.2
ClCG08G007940 Citrullus lanatus HOM05D005304 ORTHO05D004438 4.5e-16 88.2 111 51.4
Sabra08G0019800 Salix brachista HOM05D005304 ORTHO05D004438 4.5e-16 88.2 117 49.6
Rhsim03G0110900 Rhododendron simsii HOM05D005304 ORTHO05D004438 7.7e-16 87.4 103 53.4
Sed0018085 Sechium edule HOM05D005304 ORTHO05D004438 1.7e-15 86.3 111 49.5
Sed0010031 Sechium edule HOM05D005304 ORTHO05D004438 3.8e-15 85.1 109 49.5
Nn6g35176 Nelumbo nucifera HOM05D005304 ORTHO05D004438 8.5e-15 84.0 114 49.1
CSS0003867 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 1.4e-14 83.2 108 48.1
Duzib114G0655 Durio zibethinus HOM05D005304 ORTHO05D004438 1.4e-14 83.2 114 45.6
COL.COLO4_32872 Corchorus olitorius HOM05D005304 ORTHO05D004438 2.5e-14 82.4 131 43.5
Gohir.A05G290700 Gossypium hirsutum HOM05D005304 ORTHO05D004438 4.2e-14 81.6 116 50.9
TAR623G1332 Trochodendron aralioides HOM05D005304 ORTHO05D004438 5.5e-14 81.3 111 46.8
Gohir.D05G291900 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.2e-13 80.1 120 49.2
CiPaw.02G169800 Carya illinoinensis HOM05D005304 ORTHO05D004438 2.1e-13 79.3 111 46.8
Thecc.10G090600 Theobroma cacao HOM05D005304 ORTHO05D004438 2.1e-13 79.3 115 47.8
Cc02_g10500 Coffea canephora HOM05D005304 ORTHO05D004438 3.6e-13 78.6 109 48.6
Manes.11G153500 Manihot esculenta HOM05D005304 ORTHO05D004438 3.6e-13 78.6 102 48.0
Prupe.2G095100 Prunus persica HOM05D005304 ORTHO05D004438 3.6e-13 78.6 114 45.6
Gorai.009G307700 Gossypium raimondii HOM05D005304 ORTHO05D004438 4.6e-13 78.2 117 49.6
CiPaw.01G264700 Carya illinoinensis HOM05D005304 ORTHO05D004438 7.9e-13 77.4 113 48.7
Atru.chr12.921 Acer truncatum HOM05D005304 ORTHO05D004438 1.8e-12 76.3 115 44.3
Oeu059829.1 Olea europaea HOM05D005304 ORTHO05D004438 2.3e-12 75.9 105 49.5
TAR633G0523 Trochodendron aralioides HOM05D005304 ORTHO05D004438 2.3e-12 75.9 108 49.1
Cpa.g.sc128.74 Carica papaya HOM05D005304 ORTHO05D004438 3.0e-12 75.5 103 44.7
Gohir.D01G118400 Gossypium hirsutum HOM05D005304 ORTHO05D004438 3.0e-12 75.5 104 42.3
Gorai.002G144400 Gossypium raimondii HOM05D005304 ORTHO05D004438 3.0e-12 75.5 104 42.3
QL03p021677 Quercus lobata HOM05D005304 ORTHO05D004438 3.0e-12 75.5 115 46.1
TAR636G3524 Trochodendron aralioides HOM05D005304 ORTHO05D004438 3.0e-12 75.5 108 49.1
ClCG05G021460 Citrullus lanatus HOM05D005304 ORTHO05D004438 3.9e-12 75.1 113 44.2
Ciclev10033091m.g Citrus clementina HOM05D005304 ORTHO05D004438 3.9e-12 75.1 115 43.5
Gohir.A01G128800 Gossypium hirsutum HOM05D005304 ORTHO05D004438 3.9e-12 75.1 104 42.3
Sabra10G0179600 Salix brachista HOM05D005304 ORTHO05D004438 8.8e-12 73.9 110 48.2
Lalb_Chr02g0151151 Lupinus albus HOM05D005304 ORTHO05D004438 2.0e-11 72.8 121 40.5
TAR369G0323 Trochodendron aralioides HOM05D001401 ORTHO05D002222 2.5e-11 72.4 114 45.6
PGR044G1405 Punica granatum HOM05D005304 ORTHO05D004438 3.3e-11 72.0 111 45.0
QL08p052941 Quercus lobata HOM05D005304 ORTHO05D004438 3.3e-11 72.0 58 63.8
RcHm_v2.0_Chr5g0056381 Rosa chinensis HOM05D025255 ORTHO05D004438 3.3e-11 72.0 80 53.8
Cfa001771 Carpinus fangiana HOM05D005304 ORTHO05D004438 4.3e-11 71.6 59 66.1
Haze_16785 Corylus avellana HOM05D005304 ORTHO05D004438 4.3e-11 71.6 115 46.1
Oeu032435.1 Olea europaea HOM05D005304 ORTHO05D004438 4.3e-11 71.6 104 47.1
Lsat_1_v5_gn_8_22700 Lactuca sativa HOM05D005304 ORTHO05D004438 5.7e-11 71.2 109 42.2
QL03p011649 Quercus lobata HOM05D005304 ORTHO05D004438 5.7e-11 71.2 115 45.2
Sabra08G0019700 Salix brachista HOM05D005304 ORTHO05D004438 1.3e-10 70.1 82 51.2
Gohir.D05G087300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.2e-10 69.3 84 46.4
PGR044G0041 Punica granatum HOM05D005304 ORTHO05D004438 2.2e-10 69.3 85 49.4
Nn2g13894 Nelumbo nucifera HOM05D005304 ORTHO05D004438 2.8e-10 68.9 111 44.1
DCAR_019059 Daucus carota HOM05D005304 ORTHO05D004438 3.7e-10 68.6 102 46.1
Glyma.20G190800 Glycine max HOM05D005304 ORTHO05D004438 3.7e-10 68.6 128 38.3
Gohir.A05G084500 Gossypium hirsutum HOM05D005304 ORTHO05D004438 6.3e-10 67.8 61 59.0
Nitab4.5_0000107g0230 Nicotiana tabacum HOM05D005304 ORTHO05D004438 8.2e-10 67.4 106 44.3
Potri.010G231700 Populus trichocarpa HOM05D005304 ORTHO05D004438 8.2e-10 67.4 106 45.3
Sed0006013 Sechium edule HOM05D005304 ORTHO05D004438 8.2e-10 67.4 113 40.7
Lj5g0009089 Lotus japonicus HOM05D005304 ORTHO05D004438 1.4e-09 66.6 129 38.8
Lalb_Chr06g0170051 Lupinus albus HOM05D005304 ORTHO05D004438 1.4e-09 66.6 96 41.7
Prupe.6G114400 Prunus persica HOM05D005304 ORTHO05D004438 1.4e-09 66.6 94 45.7
Gohir.A05G393600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.8e-09 66.2 76 43.4
Gorai.012G025400 Gossypium raimondii HOM05D005304 ORTHO05D004438 1.8e-09 66.2 76 43.4
Solyc11g007860.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 1.8e-09 66.2 101 42.6
Gohir.D04G021300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.4e-09 65.9 76 43.4
Migut.F01894 Erythranthe guttata HOM05D005304 ORTHO05D004438 3.1e-09 65.5 118 41.5
VMungo0720G0262 Vigna mungo HOM05D005304 ORTHO05D004438 3.1e-09 65.5 137 35.0
Phvul.007G141600 Phaseolus vulgaris HOM05D005304 ORTHO05D004438 4.1e-09 65.1 129 37.2
Aqoxy2G01602 Aquilegia oxysepala HOM05D005304 ORTHO05D004438 5.3e-09 64.7 98 41.8
Eucgr.J01032 Eucalyptus grandis HOM05D005304 ORTHO05D004438 5.3e-09 64.7 114 42.1
Gorai.009G089100 Gossypium raimondii HOM05D005304 ORTHO05D004438 5.3e-09 64.7 84 46.4
Manes.04G012000 Manihot esculenta HOM05D005304 ORTHO05D004438 5.3e-09 64.7 80 47.5
Sopen11g003720 Solanum pennellii HOM05D005304 ORTHO05D004438 5.3e-09 64.7 101 41.6
Duzib150G0717 Durio zibethinus HOM05D005304 ORTHO05D004438 6.9e-09 64.3 63 57.1
FAN11G2118 Fragaria x ananassa HOM05D025255 ORTHO05D004438 6.9e-09 64.3 89 50.6
Lalb_Chr03g0036331 Lupinus albus HOM05D005304 ORTHO05D004438 6.9e-09 64.3 118 39.0
CANSAT56G0274 Cannabis sativa HOM05D005304 ORTHO05D004438 9.1e-09 63.9 75 45.3
Ca_10460_v3 Cicer arietinum L. HOM05D005304 ORTHO05D004438 9.1e-09 63.9 71 47.9
Ciclev10029845m.g Citrus clementina HOM05D005304 ORTHO05D004438 9.1e-09 63.9 124 41.1
Medtr1g090837 Medicago truncatula HOM05D005304 ORTHO05D004438 9.1e-09 63.9 135 39.3
SHI54636 Sapria himalayana HOM05D005304 ORTHO05D004438 9.1e-09 63.9 69 49.3
FvH4_7g06790 Fragaria vesca HOM05D005304 ORTHO05D004438 1.2e-08 63.5 73 49.3
FAN03G1417 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.2e-08 63.5 73 49.3
FAN06G1004 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.2e-08 63.5 73 49.3
FAN10G3090 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.2e-08 63.5 73 49.3
Psat6g173960 Pisum sativum HOM05D005304 ORTHO05D004438 1.2e-08 63.5 117 33.3
CiPaw.13G144100 Carya illinoinensis HOM05D005304 ORTHO05D004438 1.5e-08 63.2 68 54.4
FvH4_3g30440 Fragaria vesca HOM05D025255 ORTHO05D004438 1.5e-08 63.2 81 50.6
FAN21G1648 Fragaria x ananassa HOM05D025255 ORTHO05D004438 1.5e-08 63.2 64 54.7
PGSC0003DMG400027330 Solanum tuberosum HOM05D005304 ORTHO05D004438 1.5e-08 63.2 101 42.6
Actinidia06715 Actinidia chinensis HOM05D005304 ORTHO05D004438 2.0e-08 62.8 90 44.4
CsaV3_5G035790 Cucumis sativus L. HOM05D005304 ORTHO05D004438 2.0e-08 62.8 120 38.3
Eucgr.B03916 Eucalyptus grandis HOM05D005304 ORTHO05D004438 2.0e-08 62.8 103 39.8
FAN16G1536 Fragaria x ananassa HOM05D025255 ORTHO05D004438 2.0e-08 62.8 72 54.2
SalBow6G1975 Salvia bowleyana HOM05D005304 ORTHO05D004438 2.0e-08 62.8 110 44.5
MELO3C012381.2 Cucumis melo HOM05D005304 ORTHO05D004438 2.6e-08 62.4 119 39.5
RcHm_v2.0_Chr1g0336411 Rosa chinensis HOM05D005304 ORTHO05D004438 2.6e-08 62.4 98 42.9
PGSC0003DMG400023483 Solanum tuberosum HOM05D005304 ORTHO05D004438 2.6e-08 62.4 118 41.5
TPR.G37843 Trifolium pratense HOM05D005304 ORTHO05D004438 2.6e-08 62.4 91 41.8
Potri.009G003400 Populus trichocarpa HOM05D005304 ORTHO05D004438 3.4e-08 62.0 65 55.4
Eucgr.G02732 Eucalyptus grandis HOM05D005304 ORTHO05D004438 4.5e-08 61.6 65 53.8
FAN10G0320 Fragaria x ananassa HOM05D005304 ORTHO05D004438 4.5e-08 61.6 62 53.2
Glyma.10G199500 Glycine max HOM05D005304 ORTHO05D004438 4.5e-08 61.6 138 37.0
CSS0028161 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 5.9e-08 61.2 71 50.7
SalBow4G2705 Salvia bowleyana HOM05D005304 ORTHO05D004438 5.9e-08 61.2 104 43.3
QL01p014739 Quercus lobata HOM05D005304 ORTHO05D004438 7.7e-08 60.8 66 51.5
CAN.G612.11 Capsicum annuum HOM05D005304 ORTHO05D004438 1.3e-07 60.1 117 40.2
FAN02G4580 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.3e-07 60.1 72 48.6
Lsat_1_v5_gn_9_70641 Lactuca sativa HOM05D005304 ORTHO05D004438 1.3e-07 60.1 113 38.1
FAN01G2164 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.7e-07 59.7 73 47.9
FAN12G4274 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.7e-07 59.7 97 43.3
Duzib168G0406 Durio zibethinus HOM05D005304 ORTHO05D004438 2.2e-07 59.3 59 52.5
MSTRG.27507 Avicennia marina HOM05D005304 ORTHO05D004438 3.8e-07 58.5 112 37.5
Lalb_Chr19g0129331 Lupinus albus HOM05D005304 ORTHO05D004438 3.8e-07 58.5 61 49.2
Nitab4.5_0000593g0370 Nicotiana tabacum HOM05D005304 ORTHO05D004438 3.8e-07 58.5 119 37.0
Eucgr.J01033 Eucalyptus grandis HOM05D005304 ORTHO05D004438 5.0e-07 58.2 104 37.5
Lj3g0014047 Lotus japonicus HOM05D005967 ORTHO05D005174 5.0e-07 58.2 68 47.1
Nitab4.5_0001163g0010 Nicotiana tabacum HOM05D005304 ORTHO05D004438 5.0e-07 58.2 68 52.9
PGSC0003DMG400016914 Solanum tuberosum HOM05D005304 ORTHO05D004438 8.5e-07 57.4 117 40.2
Gohir.D07G109600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.1e-06 57.0 79 43.0
PGR102G2181 Punica granatum HOM05D005304 ORTHO05D004438 1.4e-06 56.6 63 47.6
Sopen05g033870 Solanum pennellii HOM05D005304 ORTHO05D004438 1.9e-06 56.2 118 37.3
MBI05_g30241_MAGBIO Magnolia biondii HOM05D005967 ORTHO05D005174 2.5e-06 55.8 60 53.3
Thecc.09G296200 Theobroma cacao HOM05D005304 ORTHO05D004438 2.5e-06 55.8 71 49.3
Migut.F01597 Erythranthe guttata HOM05D005304 ORTHO05D004438 3.2e-06 55.5 109 39.4
Sed0009329 Sechium edule HOM05D005304 ORTHO05D004438 3.2e-06 55.5 128 36.7
TWI79G0532 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 3.2e-06 55.5 83 39.8
Gohir.A07G105600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 4.2e-06 55.1 77 42.9
Gorai.001G117700 Gossypium raimondii HOM05D005304 ORTHO05D004438 4.2e-06 55.1 79 41.8
Sc25g0001350 Simmondsia chinensis HOM05D005304 ORTHO05D004438 4.2e-06 55.1 84 42.9
Eucgr.J00398 Eucalyptus grandis HOM05D005304 ORTHO05D004438 5.5e-06 54.7 71 47.9
Atru.chr3.3495 Acer truncatum HOM05D005304 ORTHO05D004438 9.4e-06 53.9 88 40.9


User provided reference genes

Program Settings