Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 3.1e-173 611.7 304 100.0
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 1.5e-156 556.2 305 91.5
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 7.9e-153 543.9 305 86.6
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 1.9e-151 539.3 305 87.2
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 1.4e-149 533.1 305 84.6
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 4.1e-149 531.6 305 83.9
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 9.0e-149 530.4 305 84.9
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 1.2e-148 530.0 305 83.6
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 1.5e-148 529.6 305 84.3
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 4.5e-148 528.1 305 84.9
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 7.7e-148 527.3 304 83.6
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 7.7e-148 527.3 305 84.3
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 7.7e-148 527.3 305 84.3
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 1.3e-147 526.6 304 83.6
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 1.3e-147 526.6 305 84.3
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 2.9e-147 525.4 305 85.2
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 3.8e-147 525.0 305 84.9
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 6.5e-147 524.2 305 84.3
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 6.5e-147 524.2 305 83.9
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 8.5e-147 523.9 305 83.9
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 1.4e-146 523.1 305 84.3
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 1.9e-146 522.7 305 83.9
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 2.5e-146 522.3 305 84.3
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 5.5e-146 521.2 305 83.6
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 7.2e-146 520.8 305 83.0
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 1.2e-145 520.0 305 83.3
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 1.6e-145 519.6 307 82.4
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 2.1e-145 519.2 305 83.0
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 2.7e-145 518.8 305 82.3
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 4.6e-145 518.1 304 82.2
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 6.1e-145 517.7 305 83.0
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 6.1e-145 517.7 305 83.0
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 7.9e-145 517.3 305 82.6
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 7.9e-145 517.3 305 83.6
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 1.0e-144 516.9 305 83.0
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 3.0e-144 515.4 305 83.0
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 3.0e-144 515.4 305 82.3
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 5.1e-144 514.6 305 82.6
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 5.1e-144 514.6 305 82.0
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 6.7e-144 514.2 305 82.3
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 6.7e-144 514.2 305 82.3
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 6.7e-144 514.2 305 83.0
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 6.7e-144 514.2 305 82.0
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 8.8e-144 513.8 305 83.0
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 8.8e-144 513.8 305 82.6
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 8.8e-144 513.8 305 82.6
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 1.1e-143 513.5 305 81.3
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 2.0e-143 512.7 304 82.6
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 2.0e-143 512.7 305 82.3
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 2.5e-143 512.3 304 82.2
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 3.3e-143 511.9 305 82.0
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 3.3e-143 511.9 305 82.0
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 3.3e-143 511.9 300 83.0
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 3.3e-143 511.9 305 82.0
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 4.3e-143 511.5 305 81.3
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 4.3e-143 511.5 305 81.6
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 7.4e-143 510.8 305 82.3
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 7.4e-143 510.8 305 82.0
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 1.3e-142 510.0 305 81.0
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 1.7e-142 509.6 305 82.0
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 2.2e-142 509.2 305 82.3
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 2.2e-142 509.2 305 82.3
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 8.2e-142 507.3 305 81.0
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 8.2e-142 507.3 305 81.0
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 8.2e-142 507.3 304 80.9
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 8.2e-142 507.3 305 81.6
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.4e-141 506.5 305 81.0
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 1.4e-141 506.5 305 80.0
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 1.8e-141 506.1 305 80.3
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 6.9e-141 504.2 304 80.6
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 9.1e-141 503.8 308 80.8
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 1.2e-140 503.4 305 81.3
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 4.5e-140 501.5 301 81.7
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.0e-139 500.4 302 80.8
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 1.0e-139 500.4 305 80.0
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 1.7e-139 499.6 304 80.6
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 3.8e-139 498.4 305 80.7
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 6.5e-139 497.7 310 80.0
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 3.2e-138 495.4 307 79.2
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 1.2e-137 493.4 305 79.7
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.2e-137 493.4 330 74.8
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 2.1e-137 492.7 307 80.1
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 4.7e-137 491.5 372 68.8
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 4.7e-137 491.5 303 80.5
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 7.9e-137 490.7 300 80.3
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 1.8e-136 489.6 326 75.8
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 2.3e-136 489.2 305 77.0
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 1.5e-135 486.5 312 76.9
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 1.5e-135 486.5 303 77.6
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 2.0e-135 486.1 312 76.9
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 3.3e-135 485.3 312 76.6
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 1.7e-134 483.0 304 76.0
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 2.8e-134 482.3 309 78.0
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 8.2e-134 480.7 310 76.5
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 1.1e-133 480.3 305 77.4
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 4.1e-133 478.4 306 76.1
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 4.1e-133 478.4 306 76.1
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 4.1e-133 478.4 306 76.1
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 5.3e-133 478.0 312 76.0
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 7.0e-133 477.6 305 75.7
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 9.1e-133 477.2 306 76.5
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 1.5e-132 476.5 312 75.6
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 1.3e-131 473.4 305 76.1
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 5.5e-130 468.0 303 75.9
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 1.7e-126 456.4 305 74.1
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 2.8e-126 455.7 304 73.7
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 6.3e-126 454.5 304 73.4
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 6.3e-126 454.5 304 73.4
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 1.6e-124 449.9 388 61.3
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 2.0e-124 449.5 304 72.7
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 2.0e-119 433.0 306 69.3
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 2.2e-118 429.5 304 69.1
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 7.0e-117 424.5 304 67.8
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 1.6e-116 423.3 300 69.3
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 3.6e-113 412.1 302 65.9
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 4.8e-110 401.7 305 68.2
Actinidia11821 Actinidia chinensis HOM05D005121 ORTHO05D006115 3.3e-106 389.0 246 79.7
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 1.6e-105 386.7 235 81.3
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 3.6e-105 385.6 303 63.7
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 1.7e-102 376.7 225 82.2
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 1.7e-99 366.7 310 60.6
vmacro15854 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 7.5e-95 351.3 225 78.7
Ah.09g236300 Amaranthus hybridus HOM05D005121 ORTHO05D006115 8.0e-89 331.3 228 75.0
HPP92_010075 Vanilla planifolia HOM05D005121 ORTHO05D006115 8.6e-83 311.2 210 71.0
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 9.3e-69 264.6 160 81.2
Peaxi162Scf01035g00217 Petunia axillaris HOM05D005121 ORTHO05D006115 4.6e-68 262.3 181 72.9
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 6.0e-68 261.9 143 88.8
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 7.3e-66 255.0 149 81.2
BcaB04g20349 Brassica carinata HOM05D005121 ORTHO05D006115 6.9e-56 221.9 154 70.8
Zm00001eb396290 Zea mays HOM05D005121 ORTHO05D006115 6.4e-54 215.3 153 68.6
Sed0008986 Sechium edule HOM05D005121 ORTHO05D006115 1.9e-53 213.8 299 45.8
MCO09G390 Micromonas commoda HOM05D005121 ORTHO05D006115 4.5e-39 166.0 298 37.2
Cre02.g142086 Chlamydomonas reinhardtii HOM05D005121 ORTHO05D006115 5.8e-39 165.6 307 37.1
ATR1132G008 Amborella trichopoda HOM05D005121 ORTHO05D006115 1.7e-38 164.1 89 86.5
Peaxi162Scf00047g00079 Petunia axillaris HOM05D005121 ORTHO05D006115 5.0e-38 162.5 80 91.2
SHI00053 Sapria himalayana HOM05D005121 ORTHO05D006115 5.0e-38 162.5 136 58.1
Ah.09g236480 Amaranthus hybridus HOM05D005121 ORTHO05D006115 8.4e-38 161.8 79 92.4
vmacro15853 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 9.3e-37 158.3 106 75.5
BolC1t03821H Brassica oleracea HOM05D005121 ORTHO05D006115 1.2e-36 157.9 80 88.8
CARHR260990 Cardamine hirsuta HOM05D005121 ORTHO05D006115 3.9e-35 152.9 125 61.6
Ah.14g088780 Amaranthus hybridus HOM05D005121 ORTHO05D006115 1.9e-34 150.6 204 47.1
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 8.8e-27 125.2 114 60.5
Hma1.2p1_0155F.1_g068340 Hydrangea macrophylla HOM05D005121 ORTHO05D006115 6.3e-25 119.0 82 68.3
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 3.1e-24 116.7 58 89.7
PRCOL_00001084 Prasinoderma coloniale HOM05D005121 ORTHO05D006115 1.8e-19 100.9 295 30.8
Atru.chr10.2036 Acer truncatum HOM05D005121 ORTHO05D006115 2.3e-19 100.5 60 76.7
SGA_v2.0_scaffold7G03907 Striga asiatica HOM05D005121 ORTHO05D006115 3.0e-19 100.1 64 73.4
TAR626G1242 Trochodendron aralioides HOM05D005121 ORTHO05D006115 1.2e-15 88.2 74 67.6
Cfa022197 Carpinus fangiana HOM05D005121 ORTHO05D006115 8.5e-14 82.0 245 28.6


User provided reference genes

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