Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 5.7e-80 300.8 150 100.0
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 1.5e-67 259.6 150 83.3
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 3.1e-65 251.9 148 79.7
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 6.8e-65 250.8 150 78.7
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 1.5e-64 249.6 148 79.7
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 2.6e-64 248.8 147 78.2
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 4.4e-64 248.1 147 79.6
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 4.4e-64 248.1 147 79.6
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 4.4e-64 248.1 147 79.6
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 7.5e-64 247.3 147 78.9
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 2.9e-63 245.4 150 78.7
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 6.4e-63 244.2 150 76.0
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 9.2e-62 240.4 150 74.7
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 6.0e-61 237.7 150 74.0
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 7.8e-61 237.3 150 75.3
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.3e-60 236.5 150 74.0
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 3.0e-60 235.3 150 73.3
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 3.9e-60 235.0 150 72.7
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 8.6e-60 233.8 150 72.0
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 8.6e-60 233.8 150 72.0
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.1e-59 233.4 150 71.3
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 1.1e-59 233.4 150 72.0
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 4.3e-59 231.5 150 71.3
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 4.3e-59 231.5 150 72.7
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 5.6e-59 231.1 150 72.7
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 5.6e-59 231.1 150 72.7
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 1.2e-58 229.9 150 73.3
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 1.2e-58 229.9 150 72.7
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 2.8e-58 228.8 150 72.7
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 3.6e-58 228.4 150 71.3
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 3.6e-58 228.4 150 70.7
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 3.6e-58 228.4 149 70.5
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 8.1e-58 227.3 149 69.1
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 1.1e-57 226.9 149 71.1
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 1.1e-57 226.9 150 73.3
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 1.8e-57 226.1 150 72.7
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 4.0e-57 224.9 150 68.0
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 5.2e-57 224.6 162 66.7
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 8.9e-57 223.8 181 63.5
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 1.2e-56 223.4 151 72.2
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 1.5e-56 223.0 150 68.0
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 3.4e-56 221.9 150 72.0
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 3.4e-56 221.9 150 69.3
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 3.4e-56 221.9 151 71.5
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 3.4e-56 221.9 150 68.7
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 3.4e-56 221.9 150 68.7
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 3.4e-56 221.9 149 69.1
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 4.4e-56 221.5 150 71.3
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 5.8e-56 221.1 151 70.9
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 5.8e-56 221.1 150 68.0
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 7.6e-56 220.7 150 68.7
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 6.4e-55 217.6 150 67.3
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 1.1e-54 216.9 150 68.7
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 1.4e-54 216.5 149 68.5
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 2.4e-54 215.7 150 68.0
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 3.2e-54 215.3 147 68.7
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 3.2e-54 215.3 150 68.0
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 3.2e-54 215.3 150 68.0
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 5.4e-54 214.5 149 68.5
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 9.2e-54 213.8 157 65.6
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 9.2e-54 213.8 135 75.6
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 1.2e-53 213.4 150 66.7
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 2.7e-53 212.2 150 68.0
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 2.7e-53 212.2 146 67.1
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 2.7e-53 212.2 150 68.7
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 4.6e-53 211.5 148 66.9
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 6.0e-53 211.1 160 63.8
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 6.0e-53 211.1 150 66.0
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 6.0e-53 211.1 148 64.9
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.0e-52 210.3 150 66.7
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 1.0e-52 210.3 149 67.1
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 1.0e-52 210.3 148 66.9
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 1.0e-52 210.3 147 66.7
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 1.0e-52 210.3 150 67.3
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 1.3e-52 209.9 150 66.0
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 1.7e-52 209.5 149 67.8
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 2.3e-52 209.1 150 66.0
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 3.0e-52 208.8 150 67.3
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 8.6e-52 207.2 161 63.4
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 1.1e-51 206.8 150 64.0
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 1.9e-51 206.1 149 63.8
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 1.9e-51 206.1 143 66.4
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 2.5e-51 205.7 149 66.4
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 2.5e-51 205.7 144 68.1
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.5e-51 205.7 145 67.6
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.5e-51 205.7 145 67.6
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.5e-51 205.7 144 68.1
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.5e-51 205.7 144 68.1
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 2.5e-51 205.7 148 68.9
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 3.3e-51 205.3 151 62.9
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 5.6e-51 204.5 144 67.4
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 5.6e-51 204.5 147 66.7
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 7.3e-51 204.1 144 67.4
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 7.3e-51 204.1 150 66.7
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 9.6e-51 203.8 149 65.1
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 9.6e-51 203.8 149 65.1
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 1.6e-50 203.0 149 62.4
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 1.6e-50 203.0 148 64.9
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 2.1e-50 202.6 149 63.8
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 2.8e-50 202.2 149 64.4
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 2.8e-50 202.2 149 65.8
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 3.6e-50 201.8 149 65.1
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 3.6e-50 201.8 150 64.7
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 1.1e-49 200.3 150 62.0
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.8e-49 199.5 150 63.3
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 1.8e-49 199.5 147 64.6
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 1.8e-49 199.5 149 63.8
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 3.1e-49 198.7 147 61.2
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 3.1e-49 198.7 147 60.5
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 6.9e-49 197.6 150 60.7
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 6.9e-49 197.6 150 60.7
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 6.9e-49 197.6 152 61.8
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 9.0e-49 197.2 148 62.2
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.5e-48 196.4 150 60.7
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 2.0e-48 196.1 170 61.2
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 2.6e-48 195.7 161 58.4
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 7.6e-48 194.1 150 59.3
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 9.9e-48 193.7 150 62.0
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 2.2e-47 192.6 222 47.7
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 2.9e-47 192.2 151 59.6
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 4.9e-47 191.4 150 60.0
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 4.9e-47 191.4 148 59.5
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 6.4e-47 191.0 143 60.8
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 8.4e-47 190.7 149 60.4
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 1.1e-46 190.3 143 60.1
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 1.1e-46 190.3 143 60.1
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 1.2e-45 186.8 193 50.8
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 2.1e-45 186.0 149 59.1
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 2.7e-45 185.7 140 62.1
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 3.5e-45 185.3 147 62.6
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 6.0e-45 184.5 144 62.5
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 1.3e-44 183.3 148 62.2
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 1.5e-43 179.9 140 56.4
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 3.3e-43 178.7 148 56.8
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 9.6e-43 177.2 140 58.6
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 7.6e-40 167.5 107 71.0
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 5.4e-38 161.4 149 52.3
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 7.1e-38 161.0 142 57.0
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 9.3e-38 160.6 151 57.6
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 1.8e-36 156.4 108 66.7
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 1.8e-36 156.4 108 66.7
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 8.7e-36 154.1 149 52.3
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 8.7e-36 154.1 151 53.0
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 7.4e-35 151.0 105 66.7
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 2.4e-33 146.0 129 58.1
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 2.4e-33 146.0 129 58.1
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 3.4e-32 142.1 133 55.6
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 2.9e-31 139.0 89 68.5
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 8.4e-31 137.5 151 49.7
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 1.6e-29 133.3 89 69.7
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 2.1e-29 132.9 99 62.6
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 7.9e-29 131.0 89 69.7
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 1.5e-27 126.7 103 59.2
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 1.5e-27 126.7 149 45.6
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 1.1e-25 120.6 149 44.3
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 1.2e-24 117.1 82 63.4
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 2.9e-23 112.5 86 58.1
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 4.2e-22 108.6 140 41.4
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 9.3e-22 107.5 91 51.6
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.8e-20 103.2 103 45.6
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 1.1e-19 100.5 138 33.3
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 2.4e-17 92.8 76 61.8
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 2.4e-17 92.8 138 30.4
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 4.1e-17 92.0 149 37.6
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 6.5e-15 84.7 149 28.9
Lsat_1_v5_gn_3_36701 Lactuca sativa HOM05D003922 ORTHO05D004492 8.5e-15 84.3 102 42.2
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 7.2e-14 81.3 52 67.3
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 9.3e-14 80.9 107 31.8
CiPaw.16G066500 Carya illinoinensis HOM05D003922 ORTHO05D004492 2.7e-13 79.3 85 52.9
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 3.6e-13 79.0 87 46.0
Mapoly0006s0297 Marchantia polymorpha HOM05D003922 ORTHO05D004492 7.4e-11 71.2 137 29.2
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 9.7e-11 70.9 44 65.9
AUR62023777 Chenopodium quinoa HOM05D003922 ORTHO05D004492 6.5e-07 58.2 46 54.3
AL1G15650 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 4.2e-06 55.5 82 39.0
BcaC02g08825 Brassica carinata HOM05D003922 ORTHO05D031941 4.2e-06 55.5 54 55.6
BolC4t26594H Brassica oleracea HOM05D003922 ORTHO05D031941 9.4e-06 54.3 54 53.7


User provided reference genes

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