Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI63G0161 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 1.7e-122 442.6 213 100.0
TWI15G0816 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 6.6e-114 414.1 213 92.5
Atru.chr12.1046 Acer truncatum HOM05D005215 ORTHO05D006382 1.1e-105 386.7 208 85.6
Cc02_g09580 Coffea canephora HOM05D005215 ORTHO05D006382 7.3e-105 384.0 209 84.2
Dinv11822 Davidia involucrata HOM05D005215 ORTHO05D006382 9.6e-105 383.6 208 85.6
PGR044G2198 Punica granatum HOM05D005215 ORTHO05D006382 9.6e-105 383.6 208 86.1
Ciclev10016681m.g Citrus clementina HOM05D005215 ORTHO05D006382 1.3e-104 383.3 213 84.5
Thecc.10G114600 Theobroma cacao HOM05D005215 ORTHO05D006382 3.6e-104 381.7 213 85.0
SalBow3G3150 Salvia bowleyana HOM05D005215 ORTHO05D006382 1.8e-103 379.4 208 83.2
SGA_v2.0_scaffold329G48861 Striga asiatica HOM05D005215 ORTHO05D006382 1.8e-103 379.4 213 81.2
CiPaw.13G040900 Carya illinoinensis HOM05D005215 ORTHO05D006382 1.2e-102 376.7 208 84.6
QL04p046761 Quercus lobata HOM05D005215 ORTHO05D006382 1.2e-102 376.7 212 81.1
Hma1.2p1_0756F.1_g213190 Hydrangea macrophylla HOM05D005215 ORTHO05D006382 1.5e-102 376.3 213 81.7
MBI01_g04055_MAGBIO Magnolia biondii HOM05D005215 ORTHO05D006382 2.6e-102 375.6 208 82.7
Manes.18G138580 Manihot esculenta HOM05D005215 ORTHO05D006382 2.6e-102 375.6 213 82.6
ClCG08G008310 Citrullus lanatus HOM05D005215 ORTHO05D006382 3.4e-102 375.2 208 83.2
CAN.G1417.3 Capsicum annuum HOM05D005215 ORTHO05D006382 9.9e-102 373.6 208 82.2
Potri.010G240000 Populus trichocarpa HOM05D005215 ORTHO05D006382 9.9e-102 373.6 208 83.7
arahy.Tifrunner.gnm1.ann1.E5H8ET Arachis hypogaea HOM05D005215 ORTHO05D006382 2.2e-101 372.5 208 82.7
Migut.F00868 Erythranthe guttata HOM05D005215 ORTHO05D006382 6.4e-101 370.9 213 80.3
Nn6g34863 Nelumbo nucifera HOM05D005215 ORTHO05D006382 6.4e-101 370.9 209 82.3
Sabra08G0012600 Salix brachista HOM05D005215 ORTHO05D006382 6.4e-101 370.9 213 81.2
Migut.C00229 Erythranthe guttata HOM05D005215 ORTHO05D006382 1.4e-100 369.8 213 79.8
Solyc11g006770.3 Solanum lycopersicum HOM05D005215 ORTHO05D006382 1.4e-100 369.8 208 80.8
Sopen11g002700 Solanum pennellii HOM05D005215 ORTHO05D006382 1.4e-100 369.8 208 80.8
PGSC0003DMG400023967 Solanum tuberosum HOM05D005215 ORTHO05D006382 1.4e-100 369.8 208 80.8
CiPaw.14G033600 Carya illinoinensis HOM05D005215 ORTHO05D006382 1.9e-100 369.4 208 83.7
Duzib114G0243 Durio zibethinus HOM05D005215 ORTHO05D006382 1.9e-100 369.4 213 82.2
Gorai.009G303500 Gossypium raimondii HOM05D005215 ORTHO05D006382 2.4e-100 369.0 208 84.6
Potri.008G019200 Populus trichocarpa HOM05D005215 ORTHO05D006382 3.2e-100 368.6 213 79.3
Sed0008445 Sechium edule HOM05D005215 ORTHO05D006382 4.2e-100 368.2 208 82.2
AUR62042083 Chenopodium quinoa HOM05D005215 ORTHO05D006382 5.4e-100 367.9 213 79.3
GSVIVG01010684001 Vitis vinifera HOM05D005215 ORTHO05D006382 5.4e-100 367.9 201 84.6
Aqoxy4G02757 Aquilegia oxysepala HOM05D005215 ORTHO05D006382 7.1e-100 367.5 208 81.7
EL10Ac4g07754 Beta vulgaris HOM05D005215 ORTHO05D006382 7.1e-100 367.5 208 81.2
Gohir.A05G287300 Gossypium hirsutum HOM05D005215 ORTHO05D006382 9.3e-100 367.1 208 84.6
Gohir.D05G288400 Gossypium hirsutum HOM05D005215 ORTHO05D006382 9.3e-100 367.1 208 84.1
Lsat_1_v5_gn_2_104201 Lactuca sativa HOM05D005215 ORTHO05D006382 9.3e-100 367.1 209 79.4
Actinidia18624 Actinidia chinensis HOM05D005215 ORTHO05D006382 1.2e-99 366.7 198 84.3
CSS0044679 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 2.1e-99 365.9 198 84.3
TAR623G0377 Trochodendron aralioides HOM05D005215 ORTHO05D006382 2.7e-99 365.5 213 80.3
Migut.B01734 Erythranthe guttata HOM05D005215 ORTHO05D006382 3.5e-99 365.2 213 78.4
vmacro07260 Vaccinium macrocarpon HOM05D005215 ORTHO05D006382 3.5e-99 365.2 206 81.6
CDE06G1220 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 4.6e-99 364.8 208 78.4
Lj5g0024589 Lotus japonicus HOM05D005215 ORTHO05D006382 4.6e-99 364.8 208 80.8
Hund06789 Selenicereus undatus HOM05D005215 ORTHO05D006382 4.6e-99 364.8 213 80.3
Eucgr.J00268 Eucalyptus grandis HOM05D005215 ORTHO05D006382 7.9e-99 364.0 213 79.3
CDE08G0922 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 1.0e-98 363.6 208 77.9
Actinidia34727 Actinidia chinensis HOM05D005215 ORTHO05D006382 1.3e-98 363.2 208 80.3
MSTRG.27562 Avicennia marina HOM05D005215 ORTHO05D006382 1.3e-98 363.2 213 77.5
Peaxi162Scf00125g00233 Petunia axillaris HOM05D005215 ORTHO05D006382 1.3e-98 363.2 208 78.8
Sc06g0002380 Simmondsia chinensis HOM05D005215 ORTHO05D006382 1.3e-98 363.2 208 79.8
TAR369G1081 Trochodendron aralioides HOM05D005215 ORTHO05D006382 1.3e-98 363.2 213 79.8
Nitab4.5_0009484g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 1.7e-98 362.8 208 78.4
Cpa.g.sc704.2 Carica papaya HOM05D005215 ORTHO05D006382 3.0e-98 362.1 193 87.0
Nitab4.5_0002586g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 5.1e-98 361.3 208 78.4
THA.LOC104801304 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 6.6e-98 360.9 213 80.8
CSS0033765 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 8.7e-98 360.5 208 79.8
arahy.Tifrunner.gnm1.ann1.KL5LPC Arachis hypogaea HOM05D005215 ORTHO05D006382 3.3e-97 358.6 231 74.0
MD02G1262000 Malus domestica HOM05D005215 ORTHO05D006382 1.3e-96 356.7 209 76.1
Prupe.2G069900 Prunus persica HOM05D005215 ORTHO05D006382 1.3e-96 356.7 213 77.9
AL4G36010 Arabidopsis lyrata HOM05D005215 ORTHO05D006382 2.8e-96 355.5 212 77.4
CARHR133400 Cardamine hirsuta HOM05D005215 ORTHO05D006382 2.8e-96 355.5 199 81.9
HanXRQChr11g0321671 Helianthus annuus HOM05D005215 ORTHO05D006382 4.8e-96 354.8 208 77.4
THA.LOC104811337 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 4.8e-96 354.8 208 79.3
TPR.G2443 Trifolium pratense HOM05D005215 ORTHO05D006382 4.8e-96 354.8 208 77.4
Medtr1g111860 Medicago truncatula HOM05D005215 ORTHO05D006382 6.2e-96 354.4 208 78.8
HanXRQChr07g0194041 Helianthus annuus HOM05D005215 ORTHO05D006382 1.1e-95 353.6 209 76.6
ATR0776G030 Amborella trichopoda HOM05D005215 ORTHO05D006382 1.4e-95 353.2 210 78.1
CANSAT56G3442 Cannabis sativa HOM05D005215 ORTHO05D006382 1.4e-95 353.2 208 78.8
PSO339G4522 Papaver somniferum HOM05D005215 ORTHO05D006382 1.4e-95 353.2 209 76.1
Sp4g21070 Schrenkiella parvula HOM05D005215 ORTHO05D006382 1.4e-95 353.2 207 78.7
Sed0014754 Sechium edule HOM05D005215 ORTHO05D006382 1.4e-95 353.2 208 77.4
AT2G38710 Arabidopsis thaliana HOM05D005215 ORTHO05D006382 1.8e-95 352.8 199 80.9
RcHm_v2.0_Chr7g0197741 Rosa chinensis HOM05D005215 ORTHO05D006382 1.8e-95 352.8 203 78.3
HPP92_020962 Vanilla planifolia HOM05D005215 ORTHO05D006382 3.1e-95 352.1 208 75.0
Carub.0004s2071 Capsella rubella HOM05D005215 ORTHO05D006382 5.3e-95 351.3 207 77.8
Lsat_1_v5_gn_0_8140 Lactuca sativa HOM05D005215 ORTHO05D006382 5.3e-95 351.3 208 77.4
Aa31LG5G21000 Aethionema arabicum HOM05D005215 ORTHO05D006382 6.9e-95 350.9 211 76.3
BcaC02g07452 Brassica carinata HOM05D005215 ORTHO05D006382 6.9e-95 350.9 207 77.3
Psat0s1904g0160 Pisum sativum HOM05D005215 ORTHO05D006382 1.2e-94 350.1 208 76.9
BolC3t14941H Brassica oleracea HOM05D005215 ORTHO05D006382 3.4e-94 348.6 205 79.5
ECA232G3141 Erigeron canadensis HOM05D005215 ORTHO05D006382 3.4e-94 348.6 208 76.0
A03p21550 Brassica napus HOM05D005215 ORTHO05D006382 4.5e-94 348.2 205 79.0
Thhalv10017213m.g Eutrema salsugineum HOM05D005215 ORTHO05D006382 4.5e-94 348.2 207 77.3
FAN13G0513 Fragaria x ananassa HOM05D005215 ORTHO05D006382 4.5e-94 348.2 203 77.3
BraA03t11391Z Brassica rapa HOM05D005215 ORTHO05D006382 5.8e-94 347.8 205 78.5
BraA04t18418Z Brassica rapa HOM05D005215 ORTHO05D006382 7.6e-94 347.4 207 76.3
Oeu030225.2 Olea europaea HOM05D005215 ORTHO05D006382 7.6e-94 347.4 217 76.5
C03p25540 Brassica napus HOM05D005215 ORTHO05D006382 9.9e-94 347.1 205 79.0
C04p66830 Brassica napus HOM05D005215 ORTHO05D006382 9.9e-94 347.1 207 76.3
FAN04G2904 Fragaria x ananassa HOM05D005215 ORTHO05D006382 9.9e-94 347.1 203 77.3
BolC4t28184H Brassica oleracea HOM05D005215 ORTHO05D006382 1.3e-93 346.7 207 76.3
PSO384G1677 Papaver somniferum HOM05D005215 ORTHO05D006382 2.2e-93 345.9 211 74.4
MD07G1058400 Malus domestica HOM05D005215 ORTHO05D006382 4.9e-93 344.7 206 75.2
FvH4_5g02370 Fragaria vesca HOM05D005215 ORTHO05D006382 1.1e-92 343.6 203 76.4
AUR62041518 Chenopodium quinoa HOM05D005215 ORTHO05D006382 1.9e-92 342.8 233 70.4
DCAR_006336 Daucus carota HOM05D005215 ORTHO05D006382 2.4e-92 342.4 201 78.1
FAN18G1091 Fragaria x ananassa HOM05D005215 ORTHO05D006382 3.2e-92 342.0 203 75.9
Glyma.20G074500 Glycine max HOM05D005215 ORTHO05D006382 4.2e-92 341.7 201 78.6
Phvul.007G235600 Phaseolus vulgaris HOM05D005215 ORTHO05D006382 5.4e-92 341.3 209 74.6
Glyma.10G123100 Glycine max HOM05D005215 ORTHO05D006382 1.6e-91 339.7 201 77.6
VMungo0720G2906 Vigna mungo HOM05D005215 ORTHO05D006382 1.6e-91 339.7 201 76.6
SEGI_01358 Sequoiadendron giganteum HOM05D005215 ORTHO05D006382 3.5e-91 338.6 209 75.6
Os10g0573100 Oryza sativa ssp. japonica HOM05D005215 ORTHO05D006382 1.8e-90 336.3 211 71.6
PSO339G6572 Papaver somniferum HOM05D005215 ORTHO05D006382 1.8e-90 336.3 210 74.8
PSO801G0072 Papaver somniferum HOM05D005215 ORTHO05D006382 7.4e-89 330.9 210 73.3
Oeu026607.3 Olea europaea HOM05D005215 ORTHO05D006382 2.1e-88 329.3 294 57.1
SMO331G0011 Selaginella moellendorffii HOM05D005215 ORTHO05D006382 3.7e-88 328.6 199 74.4
Haze_03299 Corylus avellana HOM05D005215 ORTHO05D006382 4.0e-87 325.1 248 65.7
Mapoly0059s0056 Marchantia polymorpha HOM05D005215 ORTHO05D006382 1.2e-86 323.6 199 72.9
Zm00001eb390460 Zea mays HOM05D005215 ORTHO05D006382 5.8e-86 321.2 210 68.6
Dinv10934 Davidia involucrata HOM05D005215 ORTHO05D006382 1.7e-85 319.7 166 87.3
Pp3c3_21710 Physcomitrium patens HOM05D005215 ORTHO05D006382 3.8e-85 318.5 199 72.4
Ah.11g047220 Amaranthus hybridus HOM05D005215 ORTHO05D006382 1.1e-84 317.0 209 72.7
AagrBONN_evm.TU.Sc2ySwM_117.3510 Anthoceros agrestis HOM05D005215 ORTHO05D006382 2.7e-83 312.4 198 70.7
Lj3A925G70 Lonicera japonica HOM05D005215 ORTHO05D006382 1.5e-81 306.6 178 80.9
FAN08G2650 Fragaria x ananassa HOM05D005215 ORTHO05D006382 5.7e-81 304.7 204 69.1
MELO3C019899.2 Cucumis melo HOM05D005215 ORTHO05D006382 2.1e-80 302.8 169 83.4
COL.COLO4_05151 Corchorus olitorius HOM05D005215 ORTHO05D006382 7.9e-75 284.3 424 43.2
Lalb_Chr06g0166341 Lupinus albus HOM05D005215 ORTHO05D006382 5.9e-70 268.1 145 83.4
Lalb_Chr02g0146211 Lupinus albus HOM05D005215 ORTHO05D006382 7.7e-70 267.7 145 82.8
Nn2g14190 Nelumbo nucifera HOM05D005215 ORTHO05D006382 1.2e-67 260.4 208 63.5
A04p29510 Brassica napus HOM05D005215 ORTHO05D006382 2.3e-66 256.1 145 78.6
Pp3c4_19060 Physcomitrium patens HOM05D005215 ORTHO05D006382 7.4e-65 251.1 171 69.6
CsaV3_6G004280 Cucumis sativus L. HOM05D005215 ORTHO05D006382 9.1e-55 217.6 113 86.7
CBR_g39962 Chara braunii HOM05D005215 ORTHO05D006382 3.5e-54 215.7 140 70.0
Haze_26289 Corylus avellana HOM05D005215 ORTHO05D006382 4.8e-48 195.3 197 50.8
Cre03.g146687 Chlamydomonas reinhardtii HOM05D005215 ORTHO05D006382 1.8e-47 193.4 195 48.7
Ca_25655_v3 Cicer arietinum L. HOM05D000113 ORTHO05D001798 7.0e-47 191.4 125 72.0
Potri.008G019325 Populus trichocarpa HOM05D005215 ORTHO05D006382 7.0e-47 191.4 109 82.6
MCO01G395 Micromonas commoda HOM05D005215 ORTHO05D006382 7.0e-39 164.9 195 42.6
unitig_88.g27810 Utricularia gibba HOM05D005215 ORTHO05D006382 7.0e-39 164.9 88 81.8
Sc06g0000010 Simmondsia chinensis HOM05D005215 ORTHO05D006382 1.9e-36 156.8 96 75.0
PRCOL_00005793 Prasinoderma coloniale HOM05D005215 ORTHO05D006382 1.2e-35 154.1 184 46.7
Dinv02216 Davidia involucrata HOM05D005215 ORTHO05D006382 1.0e-34 151.0 74 90.5
BcaNung04832 Brassica carinata HOM05D005215 ORTHO05D006382 4.9e-32 142.1 96 70.8
Cfa010328 Carpinus fangiana HOM05D005215 ORTHO05D006382 4.9e-32 142.1 79 83.5
Lalb_Chr06g0166351 Lupinus albus HOM05D005215 ORTHO05D006382 5.6e-20 102.1 74 64.9
Sabra16G0322800 Salix brachista HOM05D005215 ORTHO05D006382 7.3e-20 101.7 59 79.7
unitig_88.g27811 Utricularia gibba HOM05D005215 ORTHO05D006382 2.1e-19 100.1 69 68.1
Lalb_Chr02g0146221 Lupinus albus HOM05D005215 ORTHO05D006382 9.8e-17 91.3 63 66.7
Actinidia27053 Actinidia chinensis HOM05D005215 ORTHO05D006382 3.5e-14 82.8 55 72.7
Peaxi162Scf00959g00416 Petunia axillaris HOM05D005215 ORTHO05D006382 8.1e-11 71.6 40 87.5
GSVIVG01037606001 Vitis vinifera HOM05D005215 ORTHO05D014194 4.0e-10 69.3 35 82.9
Migut.F00867 Erythranthe guttata HOM05D012249 ORTHO05D014194 5.2e-10 68.9 35 85.7
THA.LOC104824416 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 3.7e-08 62.8 32 87.5
Peaxi162Scf00959g00417 Petunia axillaris HOM05D005215 ORTHO05D306904 8.3e-08 61.6 59 57.6


User provided reference genes

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