Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 0.0e+00 1170.6 623 100.0
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 1.1e-305 1052.7 674 84.0
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 1.7e-239 832.8 656 66.2
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 1.9e-233 812.8 689 63.3
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 2.1e-232 809.3 689 63.1
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 4.6e-232 808.1 653 65.7
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 9.6e-230 800.4 654 65.3
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 4.0e-228 795.0 651 65.4
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 9.0e-228 793.9 662 63.1
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 1.3e-226 790.0 660 64.1
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 1.7e-226 789.6 692 62.4
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 3.2e-225 785.4 675 63.6
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 1.6e-224 783.1 662 64.4
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 1.8e-223 779.6 653 64.9
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 3.9e-223 778.5 652 64.6
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 6.7e-223 777.7 652 64.6
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 8.7e-223 777.3 674 61.4
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 1.9e-222 776.2 664 63.0
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 1.3e-221 773.5 644 63.7
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 4.8e-221 771.5 653 63.1
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 1.2e-219 766.9 656 62.7
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 1.2e-219 766.9 675 61.3
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.8e-218 761.9 653 62.5
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 4.9e-218 761.5 634 64.4
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 8.4e-218 760.8 654 60.9
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 5.5e-217 758.1 662 61.9
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 9.3e-217 757.3 656 61.6
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 1.6e-216 756.5 654 60.9
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 1.6e-216 756.5 671 60.8
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.6e-216 755.0 638 63.0
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 4.6e-216 755.0 666 61.0
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 7.9e-216 754.2 680 59.6
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 1.0e-215 753.8 646 61.0
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 5.1e-215 751.5 652 62.6
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 1.9e-214 749.6 658 60.5
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 1.9e-214 749.6 658 60.0
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 9.6e-214 747.3 652 61.7
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 9.6e-214 747.3 633 62.6
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 4.1e-212 741.9 658 59.1
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 1.2e-211 740.3 657 59.7
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 1.5e-211 740.0 654 60.1
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 2.0e-211 739.6 658 59.1
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 1.9e-209 733.0 630 60.6
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.2e-209 732.3 658 61.9
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 1.2e-208 730.3 652 59.7
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 2.1e-208 729.6 654 58.3
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 2.7e-208 729.2 672 59.5
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 1.8e-207 726.5 654 58.6
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 2.3e-207 726.1 656 58.1
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 5.7e-206 721.5 673 58.2
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 9.7e-206 720.7 674 58.2
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 1.6e-205 719.9 652 59.0
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 8.2e-205 717.6 653 58.7
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 8.2e-205 717.6 684 56.4
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 1.1e-204 717.2 675 57.8
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 1.1e-204 717.2 675 57.8
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 1.3e-202 710.3 674 57.3
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 1.3e-202 710.3 674 57.7
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 1.3e-202 710.3 672 56.7
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 6.5e-202 708.0 656 57.9
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 1.4e-201 706.8 658 57.3
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 1.9e-201 706.4 658 57.6
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 2.5e-201 706.1 658 57.4
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 3.2e-201 705.7 655 58.0
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 2.1e-200 703.0 655 57.7
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 1.4e-199 700.3 652 58.9
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 3.9e-199 698.7 653 56.8
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 3.9e-199 698.7 656 57.3
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 5.1e-199 698.4 656 57.0
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 1.5e-198 696.8 652 56.9
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 2.0e-198 696.4 642 57.5
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 2.0e-198 696.4 675 55.1
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 7.4e-198 694.5 665 57.1
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 9.7e-198 694.1 652 56.3
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 2.8e-197 692.6 657 56.9
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 2.6e-195 686.0 587 60.5
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.2e-194 682.9 666 58.0
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 1.9e-193 679.9 665 54.6
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 4.2e-193 678.7 676 54.7
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 1.0e-191 674.1 636 56.8
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 1.8e-191 673.3 620 57.6
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 2.3e-191 672.9 659 54.2
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 8.8e-191 671.0 665 54.3
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 3.3e-190 669.1 674 52.2
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 4.1e-188 662.1 674 53.3
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 9.1e-188 661.0 565 63.7
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 2.5e-185 652.9 669 54.6
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 2.3e-183 646.4 541 63.6
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 3.0e-183 646.0 673 52.6
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 6.7e-183 644.8 659 53.0
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 2.6e-182 642.9 708 51.6
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 3.5e-179 632.5 660 52.9
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 5.0e-178 628.6 658 52.0
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 6.8e-175 618.2 612 55.7
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 6.8e-175 618.2 536 60.8
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 3.1e-172 609.4 653 52.4
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 7.0e-172 608.2 661 50.2
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 3.2e-169 599.4 614 56.0
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 2.7e-168 596.3 674 49.6
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 4.7e-168 595.5 674 49.9
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 3.4e-158 562.8 570 55.6
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 5.7e-158 562.0 638 50.0
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 5.7e-158 562.0 532 57.1
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 1.0e-154 551.2 549 55.0
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 1.5e-153 547.4 539 54.4
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 1.9e-153 547.0 513 55.8
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 3.9e-146 522.7 662 45.3
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 5.6e-145 518.8 673 44.9
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 1.6e-144 517.3 598 48.5
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 4.7e-144 515.8 658 45.6
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 4.7e-136 489.2 652 41.9
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 1.7e-133 480.7 356 69.7
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 5.6e-121 439.1 648 38.6
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 8.4e-117 425.2 617 41.0
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 1.1e-113 414.8 645 38.3
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 1.5e-113 414.5 645 38.4
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 4.8e-112 409.5 653 36.3
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 6.2e-112 409.1 433 53.1
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 2.0e-110 404.1 389 56.0
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 1.1e-100 371.7 399 53.9
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 8.7e-98 362.1 574 40.8
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 2.7e-91 340.5 248 69.8
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 2.9e-85 320.5 252 64.3
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 9.7e-81 305.4 404 46.0
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 1.6e-70 271.6 210 64.8
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 2.7e-67 260.8 572 33.9
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 1.8e-66 258.1 214 63.1
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 2.3e-58 231.1 204 63.2
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 1.5e-52 211.8 325 43.7
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 9.5e-52 209.1 308 42.9
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 1.5e-49 201.8 445 32.8
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.1e-44 185.7 133 71.4
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 7.3e-44 183.0 256 43.8
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 5.2e-42 176.8 175 49.1
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 7.3e-36 156.4 173 51.4
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 4.7e-35 153.7 249 44.2
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 1.2e-30 139.0 96 72.9
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 3.5e-30 137.5 619 25.2
Haze_23136 Corylus avellana HOM05D004114 ORTHO05D004667 3.0e-29 134.4 98 64.3
Oeu054838.1 Olea europaea HOM05D004114 ORTHO05D004667 3.0e-29 134.4 109 60.6
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 5.6e-28 130.2 251 36.7
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 4.7e-27 127.1 170 44.7
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 8.9e-26 122.9 212 41.5
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 5.8e-25 120.2 139 52.5
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.2e-24 118.2 132 52.3
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.9e-24 117.1 132 53.8
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 1.9e-23 115.2 80 72.5
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 1.9e-23 115.2 88 67.0
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 2.4e-23 114.8 88 68.2
Actinidia06340 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.9e-20 105.1 120 49.2
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 9.5e-20 102.8 69 73.9
Sabra16G0157900 Salix brachista HOM05D004114 ORTHO05D004667 3.6e-19 100.9 76 65.8
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.1e-18 99.4 67 74.6
arahy.Tifrunner.gnm1.ann1.LY7CXU Arachis hypogaea HOM05D004114 ORTHO05D004667 5.1e-13 80.5 68 57.4
C03p89890 Brassica napus HOM05D004114 ORTHO05D004667 5.1e-13 80.5 71 53.5
A08p02990 Brassica napus HOM05D004114 ORTHO05D004667 6.6e-13 80.1 74 58.1
Psat1g158360 Pisum sativum HOM05D000344 ORTHO05D025701 1.4e-10 72.4 64 56.2
arahy.Tifrunner.gnm1.ann1.KKW1YJ Arachis hypogaea HOM05D004114 ORTHO05D004667 2.4e-10 71.6 67 56.7
arahy.Tifrunner.gnm1.ann1.WKB59G Arachis hypogaea HOM05D004114 ORTHO05D004667 4.0e-10 70.9 68 51.5
Dinv18208 Davidia involucrata HOM05D000103 ORTHO05D000049 1.3e-08 65.9 51 68.6
EL10Ac3g06409 Beta vulgaris HOM05D004114 ORTHO05D004667 2.9e-08 64.7 59 50.8
arahy.Tifrunner.gnm1.ann1.JG00WY Arachis hypogaea HOM05D004114 ORTHO05D004667 3.2e-07 61.2 48 60.4
Cfa026112 Carpinus fangiana HOM05D004114 ORTHO05D125150 7.1e-07 60.1 119 31.1
arahy.Tifrunner.gnm1.ann1.FW0N61 Arachis hypogaea HOM05D000716 ORTHO05D009512 1.6e-06 58.9 335 23.3
C03p89870 Brassica napus HOM05D004114 ORTHO05D004667 1.6e-06 58.9 49 59.2
C05p12260 Brassica napus HOM05D004114 ORTHO05D024134 4.6e-06 57.4 67 47.8
BolC2t10474H Brassica oleracea HOM05D004114 ORTHO05D024134 4.6e-06 57.4 65 47.7
BolC2t10479H Brassica oleracea HOM05D004114 ORTHO05D024134 4.6e-06 57.4 65 47.7
Zm00001eb110990 Zea mays HOM05D000534 ORTHO05D000389 4.6e-06 57.4 100 38.0
CAN.G749.27 Capsicum annuum HOM05D000716 ORTHO05D009512 7.8e-06 56.6 259 26.6
Cfa021076 Carpinus fangiana HOM05D029012 ORTHO05D034191 7.8e-06 56.6 201 22.9


User provided reference genes

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