Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI60G1311 Tripterygium wilfordii HOM05D003990 ORTHO05D004925 1.0e-196 689.9 354 100.0
Manes.11G125600 Manihot esculenta HOM05D003990 ORTHO05D004925 1.3e-135 486.9 302 80.8
Cfa011935 Carpinus fangiana HOM05D003990 ORTHO05D004925 5.1e-127 458.4 287 80.1
QL02p029212 Quercus lobata HOM05D003990 ORTHO05D004925 5.1e-127 458.4 319 73.4
Potri.003G145700 Populus trichocarpa HOM05D003990 ORTHO05D004925 6.6e-127 458.0 354 68.9
Sabra03G0105900 Salix brachista HOM05D003990 ORTHO05D004925 1.3e-125 453.8 354 68.1
FAN13G1570 Fragaria x ananassa HOM05D003990 ORTHO05D004925 6.2e-125 451.4 354 69.2
RcHm_v2.0_Chr7g0186781 Rosa chinensis HOM05D003990 ORTHO05D004925 1.4e-124 450.3 281 80.8
Lsat_1_v5_gn_3_13681 Lactuca sativa HOM05D003990 ORTHO05D004925 4.0e-124 448.7 303 75.9
Hma1.2p1_0212F.1_g090230 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 9.0e-124 447.6 289 78.9
Cpa.g.sc175.15 Carica papaya HOM05D003990 ORTHO05D004925 3.4e-123 445.7 312 73.7
CiPaw.12G078400 Carya illinoinensis HOM05D003990 ORTHO05D004925 5.8e-123 444.9 360 65.3
Ciclev10020878m.g Citrus clementina HOM05D003990 ORTHO05D004925 5.8e-123 444.9 314 72.6
ECA246G0738 Erigeron canadensis HOM05D003273 ORTHO05D004023 7.6e-123 444.5 282 77.7
Dinv38683 Davidia involucrata HOM05D003990 ORTHO05D001284 1.7e-122 443.4 295 75.3
HanXRQChr06g0166861 Helianthus annuus HOM05D003990 ORTHO05D004925 2.2e-122 443.0 319 71.8
TAR629G1984 Trochodendron aralioides HOM05D003990 ORTHO05D004925 4.9e-122 441.8 339 70.5
MD06G1117400 Malus domestica HOM05D003990 ORTHO05D004925 6.4e-122 441.4 280 79.6
CSS0021441 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 1.1e-121 440.7 316 73.4
Carub.0006s2953 Capsella rubella HOM05D003990 ORTHO05D004925 1.9e-121 439.9 356 66.9
Sc01g0010590 Simmondsia chinensis HOM05D003990 ORTHO05D004925 2.4e-121 439.5 320 70.9
CSS0010282 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 3.2e-121 439.1 318 73.0
Peaxi162Scf00102g01878 Petunia axillaris HOM05D003990 ORTHO05D000951 3.2e-121 439.1 298 73.8
CAN.G792.28 Capsicum annuum HOM05D003990 ORTHO05D004925 9.3e-121 437.6 292 75.0
Prupe.5G128500 Prunus persica HOM05D003990 ORTHO05D004925 9.3e-121 437.6 281 78.6
AT4G10750 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 1.6e-120 436.8 351 66.1
Atru.chr9.1910 Acer truncatum HOM05D003990 ORTHO05D004925 2.7e-120 436.0 359 66.6
THA.LOC104813054 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 2.7e-120 436.0 348 67.8
Aqoxy7G00029 Aquilegia oxysepala HOM05D003990 ORTHO05D004925 1.3e-119 433.7 312 73.4
Lj8A201T86 Lonicera japonica HOM05D003990 ORTHO05D004925 1.3e-119 433.7 264 80.7
Rhsim02G0251300 Rhododendron simsii HOM05D003990 ORTHO05D004925 1.3e-119 433.7 319 72.1
AL6G44800 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 2.3e-119 433.0 336 68.2
CANSAT21G0847 Cannabis sativa HOM05D003990 ORTHO05D004925 2.3e-119 433.0 342 68.1
Cc08_g16660 Coffea canephora HOM05D003990 ORTHO05D004925 5.1e-119 431.8 293 74.4
CARHR255860 Cardamine hirsuta HOM05D003990 ORTHO05D004925 6.7e-119 431.4 364 64.8
Haze_14077 Corylus avellana HOM05D003990 ORTHO05D004925 1.5e-118 430.3 347 67.4
Lalb_Chr17g0338551 Lupinus albus HOM05D003990 ORTHO05D004925 1.5e-118 430.3 292 73.6
Aa31LG9G11320 Aethionema arabicum HOM05D003990 ORTHO05D004925 2.5e-118 429.5 358 64.8
Thhalv10029450m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 2.5e-118 429.5 317 71.0
PSO384G4439 Papaver somniferum HOM05D003990 ORTHO05D004925 9.6e-118 427.6 337 65.6
Oeu022039.1 Olea europaea HOM05D003990 ORTHO05D004925 1.6e-117 426.8 358 64.8
Sp6g06750 Schrenkiella parvula HOM05D003990 ORTHO05D004925 2.1e-117 426.4 367 65.1
CsaV3_3G000920 Cucumis sativus L. HOM05D003990 ORTHO05D004925 2.8e-117 426.0 308 69.5
BcaB01g01511 Brassica carinata HOM05D003990 ORTHO05D004925 3.7e-117 425.6 326 69.3
COL.COLO4_10785 Corchorus olitorius HOM05D003990 ORTHO05D004925 3.7e-117 425.6 347 66.3
BraA09t38413Z Brassica rapa HOM05D003990 ORTHO05D004925 4.8e-117 425.2 326 69.3
Gohir.A02G097800 Gossypium hirsutum HOM05D003990 ORTHO05D004925 4.8e-117 425.2 355 64.5
Gohir.D03G086700 Gossypium hirsutum HOM05D003990 ORTHO05D004925 4.8e-117 425.2 357 64.1
MELO3C013779.2 Cucumis melo HOM05D003990 ORTHO05D004925 8.1e-117 424.5 308 69.5
Sopen08g004380 Solanum pennellii HOM05D003990 ORTHO05D004925 1.1e-116 424.1 293 71.7
Gorai.003G075400 Gossypium raimondii HOM05D003990 ORTHO05D004925 1.4e-116 423.7 357 64.1
BcaC04g21069 Brassica carinata HOM05D003990 ORTHO05D004925 3.1e-116 422.5 326 69.0
A09p28480 Brassica napus HOM05D003990 ORTHO05D004925 3.1e-116 422.5 326 69.0
C09p36050 Brassica napus HOM05D003990 ORTHO05D004925 3.1e-116 422.5 326 69.0
BolC9t56444H Brassica oleracea HOM05D003990 ORTHO05D004925 3.1e-116 422.5 326 69.0
Solyc08g008530.1 Solanum lycopersicum HOM05D003990 ORTHO05D004925 4.0e-116 422.2 317 67.8
PSO135G0880 Papaver somniferum HOM05D003990 ORTHO05D004925 5.3e-116 421.8 346 64.5
PGSC0003DMG400005851 Solanum tuberosum HOM05D003990 ORTHO05D004925 5.3e-116 421.8 354 63.0
Thecc.03G222400 Theobroma cacao HOM05D003990 ORTHO05D004925 6.9e-116 421.4 352 64.5
DCAR_009092 Daucus carota HOM05D003990 ORTHO05D004925 9.0e-116 421.0 336 66.4
Duzib205G1059 Durio zibethinus HOM05D003990 ORTHO05D004925 1.2e-115 420.6 355 64.8
Eucgr.D01688 Eucalyptus grandis HOM05D003990 ORTHO05D004925 3.4e-115 419.1 366 62.0
Nitab4.5_0000673g0130 Nicotiana tabacum HOM05D003990 ORTHO05D004925 1.2e-112 410.6 327 65.1
Medtr1g031790 Medicago truncatula HOM05D003990 ORTHO05D004925 2.1e-112 409.8 343 64.1
Nitab4.5_0001962g0040 Nicotiana tabacum HOM05D003990 ORTHO05D004925 2.1e-112 409.8 337 64.7
MBI12_g30966_MAGBIO Magnolia biondii HOM05D003990 ORTHO05D004925 1.0e-111 407.5 317 66.2
TPR.G36963 Trifolium pratense HOM05D003990 ORTHO05D004925 3.3e-110 402.5 288 70.8
Lj2g0026928 Lotus japonicus HOM05D003990 ORTHO05D004925 1.3e-109 400.6 323 66.3
Ah.12g053140 Amaranthus hybridus HOM05D003990 ORTHO05D004925 2.1e-109 399.8 310 65.8
Sed0016376 Sechium edule HOM05D003990 ORTHO05D004925 4.8e-109 398.7 362 60.5
MSTRG.13719 Avicennia marina HOM05D003990 ORTHO05D004925 6.9e-108 394.8 287 68.6
CDE04G2232 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 1.0e-106 391.0 299 65.2
FvH4_5g11021 Fragaria vesca HOM05D003990 ORTHO05D004925 1.0e-106 391.0 361 62.6
VMungo1215G2928 Vigna mungo HOM05D003990 ORTHO05D004925 2.2e-106 389.8 295 67.8
Nn1g00366 Nelumbo nucifera HOM05D003990 ORTHO05D004925 6.5e-106 388.3 346 61.3
Cfa011937 Carpinus fangiana HOM05D003990 ORTHO05D004925 2.5e-105 386.3 306 66.3
Phvul.003G021600 Phaseolus vulgaris HOM05D003990 ORTHO05D004925 6.0e-104 381.7 315 63.2
HPP92_008886 Vanilla planifolia HOM05D003990 ORTHO05D004925 2.5e-102 376.3 375 56.8
ATR0620G013 Amborella trichopoda HOM05D003990 ORTHO05D004925 1.4e-100 370.5 294 64.6
CiPaw.11G113600 Carya illinoinensis HOM05D003990 ORTHO05D004925 5.3e-100 368.6 262 69.5
Os09g0529900 Oryza sativa ssp. japonica HOM05D003990 ORTHO05D004925 1.1e-97 360.9 304 60.2
Duzib084G0313 Durio zibethinus HOM05D003990 ORTHO05D004925 2.5e-97 359.8 262 65.6
Oeu022040.1 Olea europaea HOM05D003990 ORTHO05D004925 7.2e-97 358.2 259 67.2
QL02p029171 Quercus lobata HOM05D003990 ORTHO05D004925 3.9e-95 352.4 259 68.0
COL.COLO4_10784 Corchorus olitorius HOM05D003990 ORTHO05D004925 6.7e-95 351.7 265 64.5
Zm00001eb103220 Zea mays HOM05D003990 ORTHO05D004925 8.8e-95 351.3 308 57.5
vmacro11510 Vaccinium macrocarpon HOM05D003990 ORTHO05D004925 1.1e-94 350.9 327 61.8
AUR62019907 Chenopodium quinoa HOM05D003990 ORTHO05D004925 3.1e-92 342.8 247 69.6
Ca_12579_v3 Cicer arietinum L. HOM05D003990 ORTHO05D004925 1.3e-90 337.4 242 69.4
AUR62007043 Chenopodium quinoa HOM05D003990 ORTHO05D004925 5.0e-90 335.5 248 68.5
Sc01g0010580 Simmondsia chinensis HOM05D003990 ORTHO05D004925 5.0e-90 335.5 264 63.6
QL02p029158 Quercus lobata HOM05D003990 ORTHO05D004925 3.2e-89 332.8 260 65.0
AUR62007042 Chenopodium quinoa HOM05D003990 ORTHO05D004925 9.4e-89 331.3 257 63.0
EL10Ac5g12450 Beta vulgaris HOM05D003990 ORTHO05D004925 1.6e-88 330.5 249 66.3
SEGI_30656 Sequoiadendron giganteum HOM05D003990 ORTHO05D004925 2.1e-88 330.1 300 57.3
AUR62019906 Chenopodium quinoa HOM05D003990 ORTHO05D004925 3.6e-88 329.3 257 62.3
Psat6g044760 Pisum sativum HOM05D003990 ORTHO05D004925 1.4e-87 327.4 243 68.3
EL10Ac5g12452 Beta vulgaris HOM05D003990 ORTHO05D004925 1.8e-87 327.0 296 57.4
THA.LOC104815209 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 3.0e-87 326.2 262 60.7
arahy.Tifrunner.gnm1.ann1.LQZ0GD Arachis hypogaea HOM05D003990 ORTHO05D004925 1.1e-86 324.3 255 57.6
arahy.Tifrunner.gnm1.ann1.ZCAA4H Arachis hypogaea HOM05D003990 ORTHO05D004925 1.1e-86 324.3 255 57.6
Ah.12g053130 Amaranthus hybridus HOM05D003990 ORTHO05D004925 3.3e-86 322.8 257 61.1
Aa31LG6G7280 Aethionema arabicum HOM05D003990 ORTHO05D004925 1.7e-85 320.5 272 57.7
Thhalv10026820m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.7e-85 320.5 270 57.0
A01p15340 Brassica napus HOM05D003990 ORTHO05D004925 1.1e-84 317.8 257 58.8
BolC1t01855H Brassica oleracea HOM05D003990 ORTHO05D004925 9.1e-84 314.7 257 58.4
COL.COLO4_10783 Corchorus olitorius HOM05D003990 ORTHO05D004925 1.2e-83 314.3 232 66.8
AL7G29210 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 4.5e-83 312.4 259 57.5
BraA01t01479Z Brassica rapa HOM05D003990 ORTHO05D004925 7.7e-83 311.6 268 57.1
arahy.Tifrunner.gnm1.ann1.3SR05H Arachis hypogaea HOM05D003990 ORTHO05D004925 1.0e-82 311.2 255 55.3
arahy.Tifrunner.gnm1.ann1.UPJ447 Arachis hypogaea HOM05D003990 ORTHO05D004925 1.0e-82 311.2 255 55.3
BcaNung01112 Brassica carinata HOM05D003990 ORTHO05D004925 3.8e-82 309.3 261 57.9
arahy.Tifrunner.gnm1.ann1.IT3SMZ Arachis hypogaea HOM05D003990 ORTHO05D004925 1.4e-81 307.4 265 52.8
arahy.Tifrunner.gnm1.ann1.Y0R09G Arachis hypogaea HOM05D003990 ORTHO05D004925 1.4e-81 307.4 265 52.8
BcaC09g50914 Brassica carinata HOM05D003990 ORTHO05D004925 3.2e-81 306.2 268 56.3
BolC1t01856H Brassica oleracea HOM05D003990 ORTHO05D004925 4.2e-81 305.8 289 54.0
A01p15350 Brassica napus HOM05D003990 ORTHO05D004925 5.5e-81 305.4 268 56.7
Carub.0007s1702 Capsella rubella HOM05D003990 ORTHO05D004925 9.4e-81 304.7 260 56.9
C01p19290 Brassica napus HOM05D003990 ORTHO05D004925 2.7e-80 303.1 297 53.2
C01p19300 Brassica napus HOM05D003990 ORTHO05D004925 2.7e-80 303.1 268 56.0
Migut.O00797 Erythranthe guttata HOM05D003990 ORTHO05D004925 6.1e-80 302.0 233 69.1
BraA01t01478Z Brassica rapa HOM05D003990 ORTHO05D004925 7.0e-76 288.5 257 56.0
AagrBONN_evm.TU.Sc2ySwM_117.985 Anthoceros agrestis HOM05D003990 ORTHO05D004925 1.3e-74 284.3 252 57.5
BcaC09g50915 Brassica carinata HOM05D003990 ORTHO05D004925 6.5e-74 282.0 231 58.0
Mapoly0141s0022 Marchantia polymorpha HOM05D003990 ORTHO05D004925 4.2e-73 279.3 254 57.5
CARHR006280 Cardamine hirsuta HOM05D003990 ORTHO05D004925 2.1e-72 276.9 232 56.9
Glyma.07G166800 Glycine max HOM05D003990 ORTHO05D004925 3.3e-70 269.6 177 75.1
Haze_09152 Corylus avellana HOM05D003990 ORTHO05D004925 4.4e-70 269.2 195 68.7
Pp3c17_4700 Physcomitrium patens HOM05D003990 ORTHO05D004925 5.7e-70 268.9 332 47.0
Thhalv10027122m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 4.1e-68 262.7 252 51.6
Sc16g0011220 Simmondsia chinensis HOM05D003990 ORTHO05D004925 1.7e-66 257.3 251 53.4
CARHR006270 Cardamine hirsuta HOM05D003990 ORTHO05D004925 3.8e-66 256.1 230 53.9
arahy.Tifrunner.gnm1.ann1.VJUY72 Arachis hypogaea HOM05D003990 ORTHO05D004925 7.2e-65 251.9 260 49.6
arahy.Tifrunner.gnm1.ann1.E0UK9T Arachis hypogaea HOM05D003990 ORTHO05D004925 9.4e-65 251.5 260 49.6
Thecc.03G222500 Theobroma cacao HOM05D003990 ORTHO05D004925 1.4e-63 247.7 194 65.5
arahy.Tifrunner.gnm1.ann1.UE00R2 Arachis hypogaea HOM05D003990 ORTHO05D004925 4.4e-62 242.7 264 50.8
unitig_52.g17196 Utricularia gibba HOM05D003990 ORTHO05D004925 9.8e-62 241.5 193 64.2
CDE07G1159 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 7.7e-59 231.9 277 49.1
QL02p029191 Quercus lobata HOM05D003990 ORTHO05D004925 8.6e-58 228.4 402 38.6
Zm00001eb207470 Zea mays HOM05D003990 ORTHO05D004925 3.3e-57 226.5 237 51.9
Potri.001G084900 Populus trichocarpa HOM05D003990 ORTHO05D004925 1.4e-55 221.1 184 63.6
Sp7g22040 Schrenkiella parvula HOM05D003990 ORTHO05D004925 9.2e-52 208.4 161 58.4
CARHR231480 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.6e-51 207.6 183 54.6
FAN18G2679 Fragaria x ananassa HOM05D003990 ORTHO05D004925 7.8e-51 205.3 139 75.5
arahy.Tifrunner.gnm1.ann1.QV8INP Arachis hypogaea HOM05D003990 ORTHO05D004925 5.0e-50 202.6 267 44.9
Aa31LG6G7290 Aethionema arabicum HOM05D003990 ORTHO05D004925 2.1e-48 197.2 158 58.2
AT4G24080 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 1.3e-45 188.0 167 54.5
Zm00001eb366680 Zea mays HOM05D003990 ORTHO05D004925 6.0e-43 179.1 237 47.3
Hma1.2p1_0440F.1_g153760 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 5.6e-41 172.6 200 51.0
PRCOL_00003301 Prasinoderma coloniale HOM05D003990 ORTHO05D004925 7.3e-41 172.2 237 40.9
AagrBONN_evm.TU.Sc2ySwM_228.2729 Anthoceros agrestis HOM05D003990 ORTHO05D004925 6.2e-32 142.5 215 40.0
CAN.G479.14 Capsicum annuum HOM05D003990 ORTHO05D004925 8.1e-32 142.1 134 55.2
Haze_16436 Corylus avellana HOM05D003990 ORTHO05D004925 3.7e-29 133.3 188 45.7
Zm00001eb314200 Zea mays HOM05D003990 ORTHO05D004925 7.1e-28 129.0 248 35.9
FAN18G2309 Fragaria x ananassa HOM05D003990 ORTHO05D004925 1.5e-25 121.3 70 84.3
arahy.Tifrunner.gnm1.ann1.R8SYM2 Arachis hypogaea HOM05D003990 ORTHO05D004925 7.3e-25 119.0 122 53.3
Duzib068G0872 Durio zibethinus HOM05D003990 ORTHO05D004925 1.3e-21 108.2 87 63.2
Cre01.g015550 Chlamydomonas reinhardtii HOM05D003990 ORTHO05D004925 6.4e-21 105.9 181 36.5
Migut.E00635 Erythranthe guttata HOM05D003990 ORTHO05D004925 4.2e-20 103.2 92 62.0
Thhalv10027505m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.3e-18 98.2 110 48.2
Hma1.2p1_0212F.1_g090250 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 2.1e-16 90.9 63 73.0
arahy.Tifrunner.gnm1.ann1.S5BUNY Arachis hypogaea HOM05D003990 ORTHO05D004925 4.7e-16 89.7 65 67.7
Cfa021766 Carpinus fangiana HOM05D003990 ORTHO05D004925 1.1e-15 88.6 185 29.2
arahy.Tifrunner.gnm1.ann1.228U7D Arachis hypogaea HOM05D003990 ORTHO05D004925 1.3e-13 81.6 68 60.3
EL10Ac6g14266 Beta vulgaris HOM05D003990 ORTHO05D004925 8.4e-13 79.0 69 58.0
Prupe.2G052300 Prunus persica HOM05D003990 ORTHO05D004925 2.1e-11 74.3 66 53.0
unitig_52.g17197 Utricularia gibba HOM05D003990 ORTHO05D004925 2.7e-11 73.9 73 57.5
AagrBONN_evm.TU.Sc2ySwM_344.3329 Anthoceros agrestis HOM05D003990 ORTHO05D071624 3.9e-10 70.1 260 27.7
VMungo0647G2082 Vigna mungo HOM05D003990 ORTHO05D004925 3.9e-10 70.1 77 49.4
QL02p029165 Quercus lobata HOM05D003990 ORTHO05D010865 1.1e-09 68.6 58 58.6
AT4G24070 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 5.6e-09 66.2 63 55.6
QL02p029160 Quercus lobata HOM05D003990 ORTHO05D004925 8.1e-08 62.4 65 49.2


User provided reference genes

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