Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI60G0913 Tripterygium wilfordii HOM05D005414 ORTHO05D006844 1.1e-119 433.3 221 100.0
Potri.002G062600 Populus trichocarpa HOM05D005414 ORTHO05D006844 1.8e-74 283.1 213 67.1
Atru.chr13.1979 Acer truncatum HOM05D005414 ORTHO05D006844 2.4e-74 282.7 206 69.4
Duzib041G0057 Durio zibethinus HOM05D005414 ORTHO05D006844 1.1e-71 273.9 206 68.0
Ciclev10002272m.g Citrus clementina HOM05D005414 ORTHO05D006844 4.2e-71 271.9 206 66.5
Actinidia17760 Actinidia chinensis HOM05D005414 ORTHO05D006844 9.4e-71 270.8 210 66.7
CSS0029717 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 1.8e-69 266.5 210 65.7
Eucgr.F02672 Eucalyptus grandis HOM05D005414 ORTHO05D006844 1.8e-69 266.5 206 63.1
Manes.18G096200 Manihot esculenta HOM05D005414 ORTHO05D006844 1.8e-69 266.5 208 65.9
Sabra05G0151200 Salix brachista HOM05D005414 ORTHO05D006844 1.8e-69 266.5 210 62.4
Prupe.8G044100 Prunus persica HOM05D005414 ORTHO05D006844 3.0e-69 265.8 210 62.9
Thecc.08G163500 Theobroma cacao HOM05D005414 ORTHO05D006844 3.9e-69 265.4 206 64.1
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 6.7e-69 264.6 208 67.3
CSS0025663 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 8.8e-69 264.2 210 64.8
Cc10_g06420 Coffea canephora HOM05D005414 ORTHO05D006844 8.8e-69 264.2 210 64.3
vmacro21198 Vaccinium macrocarpon HOM05D005414 ORTHO05D006844 2.6e-68 262.7 207 66.2
Gohir.A06G116400 Gossypium hirsutum HOM05D005414 ORTHO05D006844 5.7e-68 261.5 206 64.6
Gorai.010G131400 Gossypium raimondii HOM05D005414 ORTHO05D006844 9.7e-68 260.8 206 64.6
Hma1.2p1_2282F.1_g318850 Hydrangea macrophylla HOM05D005414 ORTHO05D006844 1.7e-67 260.0 210 65.2
RcHm_v2.0_Chr6g0273701 Rosa chinensis HOM05D005414 ORTHO05D006844 2.8e-67 259.2 210 61.9
Rhsim06G0093200 Rhododendron simsii HOM05D005414 ORTHO05D006844 1.8e-66 256.5 210 64.8
FvH4_2g12810 Fragaria vesca HOM05D005414 ORTHO05D006844 3.1e-66 255.8 202 62.9
Gohir.D06G114900 Gossypium hirsutum HOM05D005414 ORTHO05D006844 3.1e-66 255.8 206 64.1
Medtr1g097430 Medicago truncatula HOM05D005414 ORTHO05D006844 4.1e-66 255.4 206 62.1
Phvul.007G085100 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 4.1e-66 255.4 206 62.6
MD10G1038100 Malus domestica HOM05D005414 ORTHO05D006844 5.3e-66 255.0 210 60.5
TPR.G17052 Trifolium pratense HOM05D005414 ORTHO05D006844 9.1e-66 254.2 206 62.1
CiPaw.16G007400 Carya illinoinensis HOM05D005414 ORTHO05D006844 1.2e-65 253.8 210 61.4
Psat6g189560 Pisum sativum HOM05D005414 ORTHO05D006844 1.6e-65 253.4 203 62.1
SalBow7G3693 Salvia bowleyana HOM05D005414 ORTHO05D006844 2.6e-65 252.7 209 59.3
Solyc04g072050.4 Solanum lycopersicum HOM05D005414 ORTHO05D006844 3.5e-65 252.3 210 60.5
Sopen04g028220 Solanum pennellii HOM05D005414 ORTHO05D006844 3.5e-65 252.3 210 60.5
FAN27G1467 Fragaria x ananassa HOM05D005414 ORTHO05D006844 4.5e-65 251.9 210 61.0
GSVIVG01013697001 Vitis vinifera HOM05D005414 ORTHO05D006844 5.9e-65 251.5 191 66.5
PGSC0003DMG400031145 Solanum tuberosum HOM05D005414 ORTHO05D006844 1.3e-64 250.4 210 60.0
Migut.C00158 Erythranthe guttata HOM05D005414 ORTHO05D006844 1.7e-64 250.0 211 60.2
SGA_v2.0_scaffold188G40302 Striga asiatica HOM05D005414 ORTHO05D006844 1.7e-64 250.0 210 61.0
Glyma.20G171300 Glycine max HOM05D005414 ORTHO05D006844 2.2e-64 249.6 206 59.7
MBI04_g42207_MAGBIO Magnolia biondii HOM05D005414 ORTHO05D006844 2.9e-64 249.2 233 57.1
PGR042G0638 Punica granatum HOM05D005414 ORTHO05D006844 3.8e-64 248.8 211 60.2
arahy.Tifrunner.gnm1.ann1.X1PAW1 Arachis hypogaea HOM05D005414 ORTHO05D006844 8.5e-64 247.7 209 60.3
MSTRG.24938 Avicennia marina HOM05D005414 ORTHO05D006844 8.5e-64 247.7 207 62.3
Lj5g0014662 Lotus japonicus HOM05D005414 ORTHO05D006844 1.1e-63 247.3 207 59.9
arahy.Tifrunner.gnm1.ann1.66PYZ2 Arachis hypogaea HOM05D005414 ORTHO05D006844 2.5e-63 246.1 209 60.3
VMungo0720G1060 Vigna mungo HOM05D005414 ORTHO05D006844 3.2e-63 245.7 206 60.2
Sc26g0002600 Simmondsia chinensis HOM05D005414 ORTHO05D006844 1.6e-62 243.4 202 61.4
QL02p036452 Quercus lobata HOM05D005414 ORTHO05D006844 4.7e-62 241.9 226 58.4
Phvul.007G085000 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 5.2e-61 238.4 206 60.2
Lalb_Chr02g0141631 Lupinus albus HOM05D005414 ORTHO05D006844 1.5e-60 236.9 206 57.3
THA.LOC104809748 Tarenaya hassleriana HOM05D005414 ORTHO05D006844 2.0e-60 236.5 214 54.7
DCAR_009609 Daucus carota HOM05D005414 ORTHO05D006844 9.7e-60 234.2 188 67.0
Peaxi162Scf00226g00114 Petunia axillaris HOM05D005414 ORTHO05D006844 6.3e-59 231.5 237 53.6
PSO170G2436 Papaver somniferum HOM05D005414 ORTHO05D006844 8.2e-59 231.1 207 58.5
PSO210G6322 Papaver somniferum HOM05D005414 ORTHO05D006844 8.2e-59 231.1 207 58.0
Sabra02G0050500 Salix brachista HOM05D005414 ORTHO05D006844 2.7e-57 226.1 210 58.6
Zm00001eb385480 Zea mays HOM05D005414 ORTHO05D006844 2.9e-56 222.6 201 53.2
ECA232G1443 Erigeron canadensis HOM05D005414 ORTHO05D006844 3.8e-56 222.2 203 57.6
HanXRQChr05g0144171 Helianthus annuus HOM05D005414 ORTHO05D006844 8.5e-56 221.1 210 52.9
QL02p036925 Quercus lobata HOM05D005414 ORTHO05D006844 5.5e-55 218.4 295 45.1
Os06g0581300 Oryza sativa ssp. japonica HOM05D005414 ORTHO05D006844 2.1e-54 216.5 203 53.2
Glyma.20G171400 Glycine max HOM05D005414 ORTHO05D006844 6.1e-54 214.9 208 53.4
unitig_32.g11168 Utricularia gibba HOM05D005414 ORTHO05D006844 5.2e-53 211.8 207 55.1
BcaNung07190 Brassica carinata HOM05D005414 ORTHO05D006844 4.4e-52 208.8 212 50.0
TAR628G0132 Trochodendron aralioides HOM05D005414 ORTHO05D000799 4.4e-52 208.8 168 61.3
BolC5t30882H Brassica oleracea HOM05D005414 ORTHO05D006844 5.7e-52 208.4 212 50.0
CDE05G1245 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 5.7e-52 208.4 191 53.4
Nn5g28873 Nelumbo nucifera HOM05D005414 ORTHO05D000799 7.5e-52 208.0 168 63.1
A09p41990 Brassica napus HOM05D005414 ORTHO05D006844 9.8e-52 207.6 212 50.5
BraA09t39686Z Brassica rapa HOM05D005414 ORTHO05D006844 9.8e-52 207.6 212 50.5
Sed0023257 Sechium edule HOM05D005414 ORTHO05D006844 1.3e-51 207.2 210 53.3
BcaNung07397 Brassica carinata HOM05D005414 ORTHO05D006844 1.7e-51 206.8 212 50.0
C05p21870 Brassica napus HOM05D005414 ORTHO05D006844 1.7e-51 206.8 212 50.0
Aa31LG7G6700 Aethionema arabicum HOM05D005414 ORTHO05D006844 2.8e-51 206.1 206 50.5
Sp1g20260 Schrenkiella parvula HOM05D005414 ORTHO05D006844 2.8e-51 206.1 212 49.5
Thhalv10008541m.g Eutrema salsugineum HOM05D005414 ORTHO05D006844 4.8e-51 205.3 210 50.0
CDE05G3275 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 1.8e-50 203.4 201 50.7
Carub.0001s2226 Capsella rubella HOM05D005414 ORTHO05D006844 7.0e-50 201.4 210 49.5
AL1G36290 Arabidopsis lyrata HOM05D005414 ORTHO05D006844 2.0e-49 199.9 212 49.1
MELO3C030042.2 Cucumis melo HOM05D005414 ORTHO05D006844 2.7e-49 199.5 210 49.5
FAN24G1739 Fragaria x ananassa HOM05D005414 ORTHO05D006844 3.5e-49 199.1 211 52.1
CsaV3_6G004870 Cucumis sativus L. HOM05D005414 ORTHO05D006844 4.5e-49 198.7 222 48.6
Solyc04g072031.1 Solanum lycopersicum HOM05D005414 ORTHO05D006844 3.8e-48 195.7 167 58.7
CAN.G564.21 Capsicum annuum HOM05D005414 ORTHO05D006844 9.5e-47 191.0 165 57.0
Hund26672 Selenicereus undatus HOM05D005414 ORTHO05D006844 1.6e-46 190.3 175 57.1
Aqoxy5G02011 Aquilegia oxysepala HOM05D005414 ORTHO05D006844 3.6e-46 189.1 167 58.7
AT1G22750 Arabidopsis thaliana HOM05D005414 ORTHO05D006844 4.7e-46 188.7 210 46.7
CsaV3_6G004860 Cucumis sativus L. HOM05D005414 ORTHO05D006844 3.4e-44 182.6 211 46.4
CANSAT25G0738 Cannabis sativa HOM05D005414 ORTHO05D006844 1.3e-43 180.6 210 50.0
Cpa.g.sc26.122 Carica papaya HOM05D005414 ORTHO05D006844 1.7e-43 180.3 162 58.0
MELO3C019962.2 Cucumis melo HOM05D005414 ORTHO05D006844 2.2e-43 179.9 212 47.2
Nitab4.5_0001000g0190 Nicotiana tabacum HOM05D005414 ORTHO05D006844 2.4e-42 176.4 166 57.2
ClCG08G007190 Citrullus lanatus HOM05D005414 ORTHO05D006844 7.0e-42 174.9 210 46.2
FAN15G1775 Fragaria x ananassa HOM05D005414 ORTHO05D006844 8.6e-40 167.9 205 47.8
Lsat_1_v5_gn_9_42481 Lactuca sativa HOM05D005414 ORTHO05D006844 1.9e-39 166.8 210 45.2
Lsat_1_v5_gn_4_170780 Lactuca sativa HOM05D005414 ORTHO05D006844 9.5e-39 164.5 206 43.7
CAN.G564.22 Capsicum annuum HOM05D005414 ORTHO05D006844 1.6e-38 163.7 161 50.9
Lsat_1_v5_gn_9_42501 Lactuca sativa HOM05D005414 ORTHO05D006844 2.1e-38 163.3 210 41.4
HanXRQChr11g0320151 Helianthus annuus HOM05D005414 ORTHO05D006844 4.0e-37 159.1 203 40.4
Nitab4.5_0007691g0020 Nicotiana tabacum HOM05D005414 ORTHO05D006844 5.7e-36 155.2 210 44.3
Potri.005G198600 Populus trichocarpa HOM05D005414 ORTHO05D006844 4.1e-34 149.1 167 50.9
HanXRQChr11g0320121 Helianthus annuus HOM05D005414 ORTHO05D006844 1.6e-33 147.1 211 38.9
HanXRQChr11g0320131 Helianthus annuus HOM05D005414 ORTHO05D006844 2.0e-33 146.7 207 37.7
ECA232G3911 Erigeron canadensis HOM05D005414 ORTHO05D006844 2.7e-33 146.4 207 37.7
Lsat_1_v5_gn_2_41300 Lactuca sativa HOM05D005414 ORTHO05D006844 1.9e-31 140.2 203 36.9
CARHR023110 Cardamine hirsuta HOM05D005414 ORTHO05D006844 9.5e-31 137.9 154 47.4
HanXRQChr11g0320141 Helianthus annuus HOM05D005414 ORTHO05D006844 3.6e-30 136.0 203 35.5
AUR62032103 Chenopodium quinoa HOM05D005414 ORTHO05D006844 1.7e-27 127.1 184 43.5
HPP92_008789 Vanilla planifolia HOM05D005414 ORTHO05D006844 4.9e-27 125.6 121 57.0
HanXRQChr07g0196141 Helianthus annuus HOM05D005414 ORTHO05D006844 1.1e-26 124.4 207 38.2
HanXRQChr15g0484681 Helianthus annuus HOM05D005414 ORTHO05D006844 4.1e-26 122.5 209 36.4
Lsat_1_v5_gn_1_83841 Lactuca sativa HOM05D005414 ORTHO05D006844 5.4e-26 122.1 210 35.7
HanXRQChr15g0485041 Helianthus annuus HOM05D005414 ORTHO05D006844 2.7e-25 119.8 205 35.6
HanXRQChr15g0484961 Helianthus annuus HOM05D005414 ORTHO05D006844 6.0e-25 118.6 201 37.3
SEGI_39181 Sequoiadendron giganteum HOM05D005414 ORTHO05D006844 3.0e-24 116.3 82 63.4
ATR1120G143 Amborella trichopoda HOM05D005414 ORTHO05D006844 1.6e-22 110.5 81 65.4
EL10Ac1g01628 Beta vulgaris HOM05D005414 ORTHO05D006844 3.6e-22 109.4 209 34.4
Pp3c21_15140 Physcomitrium patens HOM05D005414 ORTHO05D006844 1.4e-21 107.5 115 50.4
ECA232G0081 Erigeron canadensis HOM05D005414 ORTHO05D006844 2.3e-21 106.7 127 44.1
Sopen04g028200 Solanum pennellii HOM05D005414 ORTHO05D006844 6.8e-21 105.1 119 47.1
Lsat_1_v5_gn_1_83961 Lactuca sativa HOM05D005414 ORTHO05D006844 1.3e-19 100.9 207 31.4
SMO331G0045 Selaginella moellendorffii HOM05D005414 ORTHO05D006844 3.7e-19 99.4 100 53.0
TPR.G31416 Trifolium pratense HOM05D005414 ORTHO05D006844 1.6e-17 94.0 110 49.1
AagrBONN_evm.TU.Sc2ySwM_228.1176 Anthoceros agrestis HOM05D005414 ORTHO05D006844 4.6e-17 92.4 87 50.6
Mapoly0067s0091 Marchantia polymorpha HOM05D005414 ORTHO05D006844 1.3e-16 90.9 87 49.4
AUR62034915 Chenopodium quinoa HOM05D005414 ORTHO05D006844 5.1e-16 89.0 166 38.0
Sed0017348 Sechium edule HOM05D005414 ORTHO05D006844 5.1e-16 89.0 153 40.5
Lsat_1_v5_gn_1_117841 Lactuca sativa HOM05D001315 ORTHO05D004199 7.3e-15 85.1 147 36.1
Lsat_1_v5_gn_1_20800 Lactuca sativa HOM05D000069 ORTHO05D006844 9.5e-15 84.7 147 36.7
CBR_g58808 Chara braunii HOM05D005414 ORTHO05D006844 2.3e-13 80.1 82 51.2
Lsat_1_v5_gn_9_72760 Lactuca sativa HOM05D005414 ORTHO05D006844 5.1e-08 62.4 146 30.1
HanXRQChr01g0001821 Helianthus annuus HOM05D005414 ORTHO05D006844 5.6e-07 58.9 111 34.2
HanXRQChr11g0320081 Helianthus annuus HOM05D005414 ORTHO05D006844 7.3e-07 58.5 71 43.7
ECA233G0443 Erigeron canadensis HOM05D005414 ORTHO05D006844 8.1e-06 55.1 55 47.3


User provided reference genes

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