Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI60G0889 Tripterygium wilfordii HOM05D007047 ORTHO05D009177 9.8e-275 949.5 475 100.0
Potri.003G080700 Populus trichocarpa HOM05D007047 ORTHO05D009177 1.3e-53 214.9 557 35.2
QL12p009257 Quercus lobata HOM05D007047 ORTHO05D009177 8.0e-51 205.7 551 34.5
QL12p009685 Quercus lobata HOM05D007047 ORTHO05D009177 2.3e-50 204.1 551 34.8
COL.COLO4_10022 Corchorus olitorius HOM05D007047 ORTHO05D009177 9.7e-49 198.7 512 34.0
Thecc.03G244500 Theobroma cacao HOM05D007047 ORTHO05D009177 1.3e-48 198.4 537 32.4
Atru.chr9.1243 Acer truncatum HOM05D007047 ORTHO05D009177 7.0e-47 192.6 503 35.0
Sabra03G0052300 Salix brachista HOM05D007047 ORTHO05D009177 1.9e-44 184.5 553 32.5
FvH4_2g33151 Fragaria vesca HOM05D007047 ORTHO05D009177 1.2e-41 175.3 546 31.9
Manes.02G042900 Manihot esculenta HOM05D007047 ORTHO05D009177 1.2e-41 175.3 544 32.0
FAN08G2081 Fragaria x ananassa HOM05D007047 ORTHO05D009177 4.4e-41 173.3 549 30.2
Gorai.004G194800 Gossypium raimondii HOM05D007047 ORTHO05D009177 2.4e-39 167.5 492 32.7
FAN24G2075 Fragaria x ananassa HOM05D007047 ORTHO05D009177 4.1e-39 166.8 555 30.1
Prupe.4G179300 Prunus persica HOM05D007047 ORTHO05D009177 3.5e-38 163.7 521 31.9
Ciclev10024423m.g Citrus clementina HOM05D007047 ORTHO05D009177 5.9e-38 162.9 521 31.3
Haze_07962 Corylus avellana HOM05D007047 ORTHO05D009177 2.9e-37 160.6 387 37.0
Gohir.A08G166600 Gossypium hirsutum HOM05D007047 ORTHO05D009177 2.9e-37 160.6 480 31.5
Duzib205G0846 Durio zibethinus HOM05D007047 ORTHO05D009177 1.1e-36 158.7 510 32.0
PGR031G1177 Punica granatum HOM05D007047 ORTHO05D009177 1.1e-36 158.7 516 31.6
FAN04G0327 Fragaria x ananassa HOM05D007047 ORTHO05D009177 1.8e-34 151.4 541 29.9
RcHm_v2.0_Chr7g0204751 Rosa chinensis HOM05D007047 ORTHO05D009177 3.0e-34 150.6 553 29.1
CiPaw.12G048400 Carya illinoinensis HOM05D007047 ORTHO05D009177 5.7e-33 146.4 508 32.1
MD06G1050900 Malus domestica HOM05D007047 ORTHO05D009177 5.7e-33 146.4 551 27.8
Dinv28849 Davidia involucrata HOM05D007047 ORTHO05D006202 9.8e-33 145.6 502 31.1
Migut.A01028 Erythranthe guttata HOM05D007047 ORTHO05D009177 9.8e-33 145.6 394 33.0
CANSAT21G2499 Cannabis sativa HOM05D007047 ORTHO05D009177 2.0e-30 137.9 464 30.8
Hma1.2p1_0821F.1_g224180 Hydrangea macrophylla HOM05D007047 ORTHO05D009177 4.5e-30 136.7 446 31.8
Peaxi162Scf00190g01213 Petunia axillaris HOM05D007047 ORTHO05D009177 6.6e-29 132.9 473 29.0
Sp7g17290 Schrenkiella parvula HOM05D007047 ORTHO05D009177 6.6e-29 132.9 510 27.8
CSS0008245 Camellia sinensis var. sinensis HOM05D007047 ORTHO05D009177 1.5e-28 131.7 491 29.3
Actinidia31505 Actinidia chinensis HOM05D007047 ORTHO05D006202 4.3e-28 130.2 499 30.3
GSVIVG01004793001 Vitis vinifera HOM05D000549 ORTHO05D006202 2.3e-26 124.4 337 31.5
Glyma.01G206100 Glycine max HOM05D007047 ORTHO05D009177 1.5e-25 121.7 422 31.3
Carub.0007s2455 Capsella rubella HOM05D007047 ORTHO05D009177 3.4e-25 120.6 521 28.4
Gohir.D08G185400 Gossypium hirsutum HOM05D007047 ORTHO05D009177 4.4e-25 120.2 258 36.8
AUR62006813 Chenopodium quinoa HOM05D007047 ORTHO05D009177 7.5e-25 119.4 505 27.1
THA.LOC104807915 Tarenaya hassleriana HOM05D007047 ORTHO05D009177 9.8e-25 119.0 502 28.7
TPR.G17974 Trifolium pratense HOM05D007047 ORTHO05D009177 1.3e-24 118.6 416 29.6
Solyc06g060860.2 Solanum lycopersicum HOM05D007047 ORTHO05D009177 3.7e-24 117.1 542 28.4
Lj2g0019775 Lotus japonicus HOM05D007047 ORTHO05D009177 4.9e-24 116.7 399 29.8
TAR375G0331 Trochodendron aralioides HOM05D007047 ORTHO05D009177 4.9e-24 116.7 341 32.3
PGSC0003DMG400024159 Solanum tuberosum HOM05D007047 ORTHO05D009177 1.1e-23 115.5 544 28.3
Lalb_Chr16g0379431 Lupinus albus HOM05D007047 ORTHO05D009177 2.4e-23 114.4 406 29.3
Sopen06g021010 Solanum pennellii HOM05D007047 ORTHO05D009177 9.2e-23 112.5 542 28.2
CAN.G62.14 Capsicum annuum HOM05D007047 ORTHO05D009177 1.2e-22 112.1 435 26.9
Phvul.002G000400 Phaseolus vulgaris HOM05D007047 ORTHO05D009177 1.2e-22 112.1 411 29.2
VMungo1215G0554 Vigna mungo HOM05D002164 ORTHO05D002267 1.6e-22 111.7 421 30.2
ClCG10G002400 Citrullus lanatus HOM05D007047 ORTHO05D009177 1.3e-21 108.6 438 28.8
Rhsim07G0117200 Rhododendron simsii HOM05D007047 ORTHO05D009177 3.0e-21 107.5 402 30.1
Psat2g177160 Pisum sativum HOM05D007047 ORTHO05D009177 5.0e-21 106.7 414 29.0
Ah.10g026860 Amaranthus hybridus HOM05D007047 ORTHO05D009177 1.1e-20 105.5 427 27.9
Ca_24599_v3 Cicer arietinum L. HOM05D007047 ORTHO05D009177 1.5e-20 105.1 434 28.6
Medtr5g013140 Medicago truncatula HOM05D007047 ORTHO05D009177 1.9e-20 104.8 422 27.7
arahy.Tifrunner.gnm1.ann1.J4EMKX Arachis hypogaea HOM05D007047 ORTHO05D009177 5.6e-20 103.2 424 26.9
arahy.Tifrunner.gnm1.ann1.XH35PM Arachis hypogaea HOM05D007047 ORTHO05D009177 5.6e-20 103.2 424 26.9
SGA_v2.0_scaffold104G30204 Striga asiatica HOM05D007047 ORTHO05D009177 1.6e-19 101.7 435 27.6
Rhsim07G0117500 Rhododendron simsii HOM05D007047 ORTHO05D009177 3.6e-19 100.5 330 29.4
Sed0008627 Sechium edule HOM05D007047 ORTHO05D009177 3.6e-19 100.5 317 29.7
Dinv39189 Davidia involucrata HOM05D000549 ORTHO05D006202 4.7e-19 100.1 187 39.6
Nitab4.5_0000506g0030 Nicotiana tabacum HOM05D007047 ORTHO05D009177 4.7e-19 100.1 540 25.9
MSTRG.25515 Avicennia marina HOM05D007047 ORTHO05D009177 1.1e-18 99.0 479 26.9
EL10Ac4g09553 Beta vulgaris HOM05D007047 ORTHO05D009177 1.8e-18 98.2 404 28.5
AUR62000471 Chenopodium quinoa HOM05D007047 ORTHO05D009177 1.8e-18 98.2 494 27.5
Eucgr.D02116 Eucalyptus grandis HOM05D007047 ORTHO05D009177 1.8e-18 98.2 288 27.8
CARHR223430 Cardamine hirsuta HOM05D007047 ORTHO05D009177 3.1e-18 97.4 529 25.0
MELO3C013912.2 Cucumis melo HOM05D007047 ORTHO05D009177 8.9e-18 95.9 437 26.1
CsaV3_3G002430 Cucumis sativus L. HOM05D007047 ORTHO05D009177 8.9e-18 95.9 485 27.0
Thhalv10027153m.g Eutrema salsugineum HOM05D007047 ORTHO05D009177 8.9e-18 95.9 439 25.7
AL7G37840 Arabidopsis lyrata HOM05D007047 ORTHO05D009177 1.2e-17 95.5 507 25.6
CSS0009500 Camellia sinensis var. sinensis HOM05D007047 ORTHO05D009177 1.5e-17 95.1 411 28.5
Oeu045687.1 Olea europaea HOM05D007047 ORTHO05D009177 2.0e-17 94.7 452 25.4
Hund11335 Selenicereus undatus HOM05D007047 ORTHO05D009177 2.6e-17 94.4 454 26.9
Aa31LG2G12990 Aethionema arabicum HOM05D007047 ORTHO05D009177 3.4e-17 94.0 500 24.0
FAN27G3081 Fragaria x ananassa HOM05D007047 ORTHO05D009177 4.4e-17 93.6 316 29.1
A08p12720 Brassica napus HOM05D007047 ORTHO05D006202 7.5e-17 92.8 493 25.8
SalBow6G1440 Salvia bowleyana HOM05D007047 ORTHO05D009177 9.8e-17 92.4 447 27.1
Nn6g33825 Nelumbo nucifera HOM05D007047 ORTHO05D009177 1.7e-16 91.7 376 25.3
BcaB04g18396 Brassica carinata HOM05D007047 ORTHO05D006202 2.9e-16 90.9 536 25.2
DCAR_000643 Daucus carota HOM05D007047 ORTHO05D009177 2.9e-16 90.9 566 23.5
FAN20G0731 Fragaria x ananassa HOM05D007047 ORTHO05D009177 4.9e-16 90.1 305 28.9
Nitab4.5_0006375g0010 Nicotiana tabacum HOM05D007047 ORTHO05D009177 8.3e-16 89.4 486 26.7
Cc08_g11870 Coffea canephora HOM05D000549 ORTHO05D006202 1.1e-15 89.0 183 35.0
Aqoxy3G02722 Aquilegia oxysepala HOM05D007047 ORTHO05D009177 1.4e-15 88.6 405 25.9
BraA08t33261Z Brassica rapa HOM05D007047 ORTHO05D009177 1.9e-15 88.2 480 25.4
Ciclev10019636m.g Citrus clementina HOM05D000549 ORTHO05D006202 1.9e-15 88.2 294 31.0
Oeu045675.1 Olea europaea HOM05D007047 ORTHO05D009177 1.9e-15 88.2 182 37.4
Cpa.g.sc559.1 Carica papaya HOM05D007047 ORTHO05D009177 4.1e-15 87.0 323 29.1
AT4G16807 Arabidopsis thaliana HOM05D007047 ORTHO05D009177 5.4e-15 86.7 511 25.0
BolC8t48412H Brassica oleracea HOM05D007047 ORTHO05D009177 2.3e-13 81.3 505 25.0
BcaC07g38023 Brassica carinata HOM05D007047 ORTHO05D009177 6.6e-13 79.7 506 24.7
PSO063G2347 Papaver somniferum HOM05D007047 ORTHO05D009177 1.1e-12 79.0 473 22.6
Lsat_1_v5_gn_4_126100 Lactuca sativa HOM05D007047 ORTHO05D009177 1.8e-10 71.6 312 26.3
unitig_744.g24476 Utricularia gibba HOM05D007047 ORTHO05D009177 4.0e-10 70.5 295 25.8
Cpa.g.sc89.13 Carica papaya HOM05D007047 ORTHO05D009177 1.5e-09 68.6 153 33.3
Medtr5g013080 Medicago truncatula HOM05D007047 ORTHO05D009177 2.6e-09 67.8 52 55.8
HPP92_022107 Vanilla planifolia HOM05D007047 ORTHO05D009177 9.9e-09 65.9 108 38.0
ECA240G0572 Erigeron canadensis HOM05D007047 ORTHO05D009177 6.4e-08 63.2 347 24.8
HanXRQChr11g0329491 Helianthus annuus HOM05D007047 ORTHO05D009177 6.4e-08 63.2 338 24.9
Sc07g0009150 Simmondsia chinensis HOM05D007047 ORTHO05D009177 8.3e-08 62.8 240 31.2
FvH4_5g19900 Fragaria vesca HOM05D007047 ORTHO05D009177 3.2e-07 60.8 110 34.5
Cpa.g.sc1463.1 Carica papaya HOM05D007047 ORTHO05D009177 5.4e-07 60.1 103 36.9
Ciclev10023353m.g Citrus clementina HOM05D007047 ORTHO05D009177 1.2e-06 58.9 54 51.9
Thhalv10027163m.g Eutrema salsugineum HOM05D007047 ORTHO05D009177 2.1e-06 58.2 47 51.1


User provided reference genes

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