Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI60G0838 Tripterygium wilfordii HOM05D003422 ORTHO05D413943 1.4e-72 276.2 138 100.0
Nitab4.5_0000979g0040 Nicotiana tabacum HOM05D003422 ORTHO05D004263 9.2e-08 60.8 37 75.7
Peaxi162Scf00128g00219 Petunia axillaris HOM05D003422 ORTHO05D004263 9.2e-08 60.8 37 75.7
QL03p061510 Quercus lobata HOM05D003422 ORTHO05D004263 9.2e-08 60.8 36 77.8
Solyc01g005810.3 Solanum lycopersicum HOM05D003422 ORTHO05D004263 9.2e-08 60.8 37 75.7
Sopen01g001810 Solanum pennellii HOM05D003422 ORTHO05D004263 9.2e-08 60.8 37 75.7
PGSC0003DMG400032131 Solanum tuberosum HOM05D003422 ORTHO05D004263 9.2e-08 60.8 37 75.7
Oeu041425.1 Olea europaea HOM05D003422 ORTHO05D004263 1.2e-07 60.5 36 77.8
PGR102G0689 Punica granatum HOM05D003422 ORTHO05D004263 1.2e-07 60.5 36 77.8
SGA_v2.0_scaffold63G21735 Striga asiatica HOM05D003637 ORTHO05D004175 1.2e-07 60.5 36 77.8
SGA_v2.0_scaffold87G27078 Striga asiatica HOM05D003637 ORTHO05D004175 1.2e-07 60.5 36 77.8
arahy.Tifrunner.gnm1.ann1.FFB06F Arachis hypogaea HOM05D003422 ORTHO05D004263 1.6e-07 60.1 36 75.0
arahy.Tifrunner.gnm1.ann1.G4VR7T Arachis hypogaea HOM05D003422 ORTHO05D004263 2.1e-07 59.7 36 72.2
arahy.Tifrunner.gnm1.ann1.I3QT17 Arachis hypogaea HOM05D003422 ORTHO05D004263 2.1e-07 59.7 36 72.2
Dinv15231 Davidia involucrata HOM05D003422 ORTHO05D004263 2.1e-07 59.7 36 75.0
Lalb_Chr10g0099861 Lupinus albus HOM05D003422 ORTHO05D004263 2.1e-07 59.7 36 75.0
Nitab4.5_0009109g0040 Nicotiana tabacum HOM05D003422 ORTHO05D004263 2.7e-07 59.3 37 73.0
Nitab4.5_0016963g0010 Nicotiana tabacum HOM05D003422 ORTHO05D004263 2.7e-07 59.3 37 75.7
Hund06028 Selenicereus undatus HOM05D003422 ORTHO05D004263 2.7e-07 59.3 36 75.0
unitig_21.g20608 Utricularia gibba HOM05D003422 ORTHO05D004263 2.7e-07 59.3 36 77.8
Actinidia15098 Actinidia chinensis HOM05D003422 ORTHO05D004263 4.6e-07 58.5 27 92.6
CANSAT64G0467 Cannabis sativa HOM05D003422 ORTHO05D004263 4.6e-07 58.5 27 92.6
Cfa009213 Carpinus fangiana HOM05D003422 ORTHO05D004263 4.6e-07 58.5 27 92.6
Cfa012129 Carpinus fangiana HOM05D003422 ORTHO05D004263 4.6e-07 58.5 27 92.6
Haze_08919 Corylus avellana HOM05D003422 ORTHO05D004263 4.6e-07 58.5 27 92.6
Haze_12250 Corylus avellana HOM05D003422 ORTHO05D004263 4.6e-07 58.5 27 92.6
MD03G1198200 Malus domestica HOM05D003422 ORTHO05D004263 4.6e-07 58.5 27 92.6
Prupe.1G244800 Prunus persica HOM05D003422 ORTHO05D004263 4.6e-07 58.5 27 92.6
Prupe.8G011700 Prunus persica HOM05D003422 ORTHO05D004263 4.6e-07 58.5 27 92.6
Prupe.8G016700 Prunus persica HOM05D003422 ORTHO05D004263 4.6e-07 58.5 27 92.6
Rhsim02G0001300 Rhododendron simsii HOM05D003422 ORTHO05D004263 4.6e-07 58.5 27 92.6
Rhsim12G0110100 Rhododendron simsii HOM05D003422 ORTHO05D004263 4.6e-07 58.5 27 92.6
RcHm_v2.0_Chr4g0433011 Rosa chinensis HOM05D003422 ORTHO05D004263 4.6e-07 58.5 27 92.6
Sc14g0008740 Simmondsia chinensis HOM05D003422 ORTHO05D004263 4.6e-07 58.5 27 92.6
TWI23G0208 Tripterygium wilfordii HOM05D003422 ORTHO05D004263 4.6e-07 58.5 27 92.6
TWI39G0719 Tripterygium wilfordii HOM05D003422 ORTHO05D004263 4.6e-07 58.5 27 92.6
TWI60G1267 Tripterygium wilfordii HOM05D047095 ORTHO05D413846 4.6e-07 58.5 59 52.5
vmacro17129 Vaccinium macrocarpon HOM05D003422 ORTHO05D004263 4.6e-07 58.5 27 92.6
Cc11_g15770 Coffea canephora HOM05D003422 ORTHO05D004263 6.0e-07 58.2 27 88.9
Dinv38208 Davidia involucrata HOM05D003422 ORTHO05D004263 6.0e-07 58.2 36 72.2
Migut.E00204 Erythranthe guttata HOM05D003422 ORTHO05D004263 6.0e-07 58.2 36 75.0
QL03p058012 Quercus lobata HOM05D003422 ORTHO05D004263 6.0e-07 58.2 27 88.9
Actinidia27808 Actinidia chinensis HOM05D003422 ORTHO05D004263 7.8e-07 57.8 27 88.9
ATR0824G091 Amborella trichopoda HOM05D003422 ORTHO05D004263 7.8e-07 57.8 26 96.2
CAN.G158.25 Capsicum annuum HOM05D003422 ORTHO05D004263 7.8e-07 57.8 37 70.3
CiPaw.05G181800 Carya illinoinensis HOM05D003422 ORTHO05D004263 7.8e-07 57.8 27 88.9
HanXRQChr06g0172831 Helianthus annuus HOM05D003422 ORTHO05D004263 7.8e-07 57.8 37 70.3
Hma1.2p1_3343F.1_g335440 Hydrangea macrophylla HOM05D003422 ORTHO05D004263 7.8e-07 57.8 27 88.9
Lalb_Chr04g0254851 Lupinus albus HOM05D003422 ORTHO05D004263 7.8e-07 57.8 36 72.2
Nn8g39875 Nelumbo nucifera HOM05D003422 ORTHO05D004263 7.8e-07 57.8 27 88.9
Rhsim06G0078600 Rhododendron simsii HOM05D003422 ORTHO05D004263 7.8e-07 57.8 27 88.9
Potri.012G085300 Populus trichocarpa HOM05D003422 ORTHO05D004263 1.0e-06 57.4 36 72.2
Potri.015G083700 Populus trichocarpa HOM05D003422 ORTHO05D004263 1.0e-06 57.4 36 72.2
Sabra12G0061400 Salix brachista HOM05D003422 ORTHO05D004263 1.0e-06 57.4 36 72.2
Actinidia01349 Actinidia chinensis HOM05D003422 ORTHO05D004263 1.3e-06 57.0 26 92.3
Nitab4.5_0001565g0060 Nicotiana tabacum HOM05D003422 ORTHO05D004263 1.3e-06 57.0 37 70.3
GSVIVG01007655001 Vitis vinifera HOM05D003422 ORTHO05D004263 1.3e-06 57.0 36 72.2
GSVIVG01021879001 Vitis vinifera HOM05D003422 ORTHO05D004263 1.3e-06 57.0 36 72.2
Atru.chr3.1559 Acer truncatum HOM05D003422 ORTHO05D004263 1.7e-06 56.6 26 92.3
Atru.chr3.1581 Acer truncatum HOM05D003422 ORTHO05D004263 1.7e-06 56.6 26 92.3
CSS0036067 Camellia sinensis var. sinensis HOM05D003422 ORTHO05D004263 1.7e-06 56.6 27 85.2
CiPaw.05G159400 Carya illinoinensis HOM05D003422 ORTHO05D004263 1.7e-06 56.6 27 85.2
Cpa.g.sc33.23 Carica papaya HOM05D003422 ORTHO05D004263 2.3e-06 56.2 35 71.4
ECA233G3049 Erigeron canadensis HOM05D003422 ORTHO05D004263 2.3e-06 56.2 37 67.6
Eucgr.B00881 Eucalyptus grandis HOM05D003422 ORTHO05D004263 2.3e-06 56.2 27 88.9
Eucgr.B00992 Eucalyptus grandis HOM05D003422 ORTHO05D004263 2.3e-06 56.2 27 88.9
Eucgr.K00985 Eucalyptus grandis HOM05D003422 ORTHO05D004263 2.3e-06 56.2 27 88.9
Eucgr.K01009 Eucalyptus grandis HOM05D003422 ORTHO05D004263 2.3e-06 56.2 27 85.2
FvH4_4g25580 Fragaria vesca HOM05D003422 ORTHO05D004263 2.3e-06 56.2 27 88.9
FAN07G0682 Fragaria x ananassa HOM05D003422 ORTHO05D004263 2.3e-06 56.2 27 88.9
FAN17G2514 Fragaria x ananassa HOM05D003422 ORTHO05D004263 2.3e-06 56.2 27 88.9
FAN22G1899 Fragaria x ananassa HOM05D003422 ORTHO05D004263 2.3e-06 56.2 27 88.9
Lsat_1_v5_gn_8_152261 Lactuca sativa HOM05D003422 ORTHO05D004263 2.3e-06 56.2 37 70.3
Nn2g13933 Nelumbo nucifera HOM05D003422 ORTHO05D004263 2.3e-06 56.2 27 88.9
Nn8g40815 Nelumbo nucifera HOM05D003422 ORTHO05D004263 2.3e-06 56.2 27 88.9
Sed0026406 Sechium edule HOM05D003422 ORTHO05D004263 2.3e-06 56.2 35 71.4
ClCG07G015410 Citrullus lanatus HOM05D003422 ORTHO05D004263 3.0e-06 55.8 35 71.4
COL.COLO4_05559 Corchorus olitorius HOM05D003422 ORTHO05D004263 3.0e-06 55.8 35 71.4
MD11G1214400 Malus domestica HOM05D003422 ORTHO05D004263 3.0e-06 55.8 27 88.9
vmacro16194 Vaccinium macrocarpon HOM05D003422 ORTHO05D004263 3.0e-06 55.8 26 92.3
Aqoxy5G03760 Aquilegia oxysepala HOM05D003422 ORTHO05D004263 3.9e-06 55.5 27 81.5
EL10Ac6g13812 Beta vulgaris HOM05D003422 ORTHO05D004263 3.9e-06 55.5 27 88.9
BraA02t06729Z Brassica rapa HOM05D003422 ORTHO05D004263 3.9e-06 55.5 27 88.9
MELO3C017744.2 Cucumis melo HOM05D003422 ORTHO05D004263 3.9e-06 55.5 35 68.6
DCAR_026512 Daucus carota HOM05D003422 ORTHO05D004263 3.9e-06 55.5 27 88.9
Glyma.06G286100 Glycine max HOM05D003422 ORTHO05D004263 3.9e-06 55.5 36 69.4
Glyma.12G119800 Glycine max HOM05D003422 ORTHO05D004263 3.9e-06 55.5 36 69.4
Gohir.A12G199400 Gossypium hirsutum HOM05D003422 ORTHO05D004263 3.9e-06 55.5 35 71.4
Gohir.D12G202200 Gossypium hirsutum HOM05D003422 ORTHO05D004263 3.9e-06 55.5 35 71.4
Gorai.008G217200 Gossypium raimondii HOM05D003422 ORTHO05D004263 3.9e-06 55.5 35 71.4
Manes.13G024200 Manihot esculenta HOM05D003422 ORTHO05D004263 3.9e-06 55.5 35 74.3
Sed0010066 Sechium edule HOM05D003422 ORTHO05D004263 3.9e-06 55.5 35 68.6
Aa31LG7G7310 Aethionema arabicum HOM05D003422 ORTHO05D004263 5.1e-06 55.1 27 88.9
AT1G23280 Arabidopsis thaliana HOM05D003422 ORTHO05D004263 5.1e-06 55.1 27 88.9
Lj1g0018398 Lotus japonicus HOM05D003422 ORTHO05D004263 5.1e-06 55.1 36 66.7
Phvul.010G035100 Phaseolus vulgaris HOM05D003422 ORTHO05D004263 5.1e-06 55.1 36 66.7
Phvul.011G000100 Phaseolus vulgaris HOM05D003422 ORTHO05D004263 5.1e-06 55.1 36 66.7
Sabra15G0107000 Salix brachista HOM05D003422 ORTHO05D004263 5.1e-06 55.1 26 88.5
HPP92_014432 Vanilla planifolia HOM05D003422 ORTHO05D004263 6.6e-06 54.7 26 88.5
CsaV3_4G003000 Cucumis sativus L. HOM05D003422 ORTHO05D004263 8.6e-06 54.3 35 65.7
Lsat_1_v5_gn_5_166341 Lactuca sativa HOM05D003422 ORTHO05D004263 8.6e-06 54.3 27 85.2
Os07g0270900 Oryza sativa ssp. japonica HOM05D003422 ORTHO05D004263 8.6e-06 54.3 36 66.7


User provided reference genes

Program Settings