Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI60G0809 Tripterygium wilfordii HOM05D004673 ORTHO05D005596 1.2e-200 704.1 831 100.0
Potri.001G003200 Populus trichocarpa HOM05D004673 ORTHO05D005596 1.0e-77 295.8 785 76.2
TAR623G1034 Trochodendron aralioides HOM05D004673 ORTHO05D005596 1.0e-77 295.8 793 70.6
Atru.chr1.2923 Acer truncatum HOM05D004673 ORTHO05D005596 5.1e-69 266.9 782 65.7
QL02p096023 Quercus lobata HOM05D004673 ORTHO05D005596 1.5e-68 265.4 779 72.7
Cfa009556 Carpinus fangiana HOM05D004673 ORTHO05D005596 2.1e-67 261.5 795 68.9
Cc01_g00160 Coffea canephora HOM05D004673 ORTHO05D005596 2.8e-67 261.2 835 66.2
QL02p095991 Quercus lobata HOM05D004673 ORTHO05D005596 2.4e-63 248.1 779 71.6
CSS0005892 Camellia sinensis var. sinensis HOM05D004673 ORTHO05D005596 1.5e-60 238.8 458 76.2
Dinv13478 Davidia involucrata HOM05D004673 ORTHO05D005596 4.8e-59 233.8 664 68.5
Aqoxy1G00488 Aquilegia oxysepala HOM05D004673 ORTHO05D005596 8.2e-59 233.0 790 70.6
ClCG03G014570 Citrullus lanatus HOM05D004673 ORTHO05D005596 1.4e-58 232.3 793 65.7
Sed0024334 Sechium edule HOM05D004673 ORTHO05D005596 1.3e-56 225.7 794 67.8
CsaV3_1G041610 Cucumis sativus L. HOM05D004673 ORTHO05D005596 2.9e-56 224.6 789 65.8
DCAR_032195 Daucus carota HOM05D004673 ORTHO05D005596 3.2e-55 221.1 798 64.9
Manes.03G086906 Manihot esculenta HOM05D004673 ORTHO05D005596 5.5e-55 220.3 440 74.5
CANSAT11G1431 Cannabis sativa HOM05D004673 ORTHO05D005596 9.3e-55 219.5 806 66.9
Haze_22936 Corylus avellana HOM05D004673 ORTHO05D005596 5.1e-53 213.8 787 68.4
MELO3C015571.2 Cucumis melo HOM05D004673 ORTHO05D005596 5.1e-53 213.8 790 65.7
Rhsim13G0233200 Rhododendron simsii HOM05D004673 ORTHO05D005596 1.1e-52 212.6 802 69.1
MBI11_g38090_MAGBIO Magnolia biondii HOM05D004673 ORTHO05D005596 1.9e-52 211.8 788 72.2
Peaxi162Scf00705g00063 Petunia axillaris HOM05D004673 ORTHO05D005596 8.2e-51 206.5 787 65.7
Ciclev10018053m.g Citrus clementina HOM05D004673 ORTHO05D005596 1.1e-50 206.1 724 72.1
Lsat_1_v5_gn_6_55581 Lactuca sativa HOM05D004673 ORTHO05D005596 1.3e-48 199.1 446 75.1
QL01p003771 Quercus lobata HOM05D004673 ORTHO05D005596 1.1e-47 196.1 818 48.2
Sabra01G0002300 Salix brachista HOM05D004673 ORTHO05D005596 1.9e-47 195.3 315 71.7
CAN.G1834.13 Capsicum annuum HOM05D004673 ORTHO05D005596 4.2e-47 194.1 800 66.4
Hma1.2p1_0589F.1_g184830 Hydrangea macrophylla HOM05D004673 ORTHO05D005596 5.5e-47 193.7 458 66.8
Prupe.7G003900 Prunus persica HOM05D004673 ORTHO05D005596 5.5e-47 193.7 784 59.1
DCAR_013113 Daucus carota HOM05D004673 ORTHO05D005596 1.6e-46 192.2 805 64.3
Nitab4.5_0000551g0010 Nicotiana tabacum HOM05D004673 ORTHO05D005596 2.7e-46 191.4 815 63.1
Nitab4.5_0006195g0010 Nicotiana tabacum HOM05D004673 ORTHO05D005596 5.1e-45 187.2 795 64.2
Lsat_1_v5_gn_6_55380 Lactuca sativa HOM05D004673 ORTHO05D005596 1.4e-42 179.1 445 70.8
vmacro23200 Vaccinium macrocarpon HOM05D005410 ORTHO05D007394 2.4e-42 178.3 775 51.6
Ciclev10024612m.g Citrus clementina HOM05D004673 ORTHO05D005596 5.3e-42 177.2 785 68.2
DCAR_030114 Daucus carota HOM05D004673 ORTHO05D005596 6.9e-42 176.8 809 64.0
ECA233G4672 Erigeron canadensis HOM05D004673 ORTHO05D005596 1.5e-41 175.6 447 72.7
Lsat_1_v5_gn_6_53540 Lactuca sativa HOM05D004673 ORTHO05D005596 5.9e-41 173.7 445 68.5
Thecc.05G294400 Theobroma cacao HOM05D004673 ORTHO05D005596 5.9e-41 173.7 780 68.7
QL01p003522 Quercus lobata HOM05D000182 ORTHO05D005596 2.2e-40 171.8 775 41.9
Lsat_1_v5_gn_1_25861 Lactuca sativa HOM05D004673 ORTHO05D005596 9.4e-39 166.4 776 58.2
DCAR_030109 Daucus carota HOM05D004673 ORTHO05D005596 2.6e-36 158.3 464 62.3
DCAR_030979 Daucus carota HOM05D004673 ORTHO05D005596 5.7e-36 157.1 463 59.6
DCAR_030099 Daucus carota HOM05D004673 ORTHO05D005596 2.2e-35 155.2 472 62.5
QL01p004573 Quercus lobata HOM05D004673 ORTHO05D005596 8.2e-35 153.3 465 66.5
AUR62032055 Chenopodium quinoa HOM05D004673 ORTHO05D005596 5.3e-34 150.6 794 65.1
QL01p016345 Quercus lobata HOM05D004673 ORTHO05D005596 1.2e-33 149.4 805 65.6
DCAR_030101 Daucus carota HOM05D004673 ORTHO05D005596 1.5e-33 149.1 340 49.1
C03p40670 Brassica napus HOM05D004673 ORTHO05D005596 4.2e-31 141.0 792 58.6
Lsat_1_v5_gn_6_55460 Lactuca sativa HOM05D004673 ORTHO05D005596 9.4e-31 139.8 448 61.2
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 1.6e-30 139.0 252 52.4
Gohir.A11G259500 Gossypium hirsutum HOM05D004673 ORTHO05D005596 2.7e-30 138.3 779 65.5
COL.COLO4_13599 Corchorus olitorius HOM05D004673 ORTHO05D005596 6.1e-30 137.1 312 64.4
BolC3t16332H Brassica oleracea HOM05D004673 ORTHO05D005596 1.0e-29 136.3 776 59.4
EL10Ac3g06819 Beta vulgaris HOM05D004673 ORTHO05D005596 3.9e-29 134.4 216 63.4
Actinidia00906 Actinidia chinensis HOM05D004673 ORTHO05D005596 7.4e-28 130.2 171 71.9
DCAR_030112 Daucus carota HOM05D004673 ORTHO05D005596 7.4e-28 130.2 210 66.2
QL01p004480 Quercus lobata HOM05D004673 ORTHO05D005596 7.4e-28 130.2 219 65.8
DCAR_030110 Daucus carota HOM05D004673 ORTHO05D005596 9.7e-28 129.8 331 59.8
Dinv09263 Davidia involucrata HOM05D004673 ORTHO05D005596 2.2e-27 128.6 780 62.4
DCAR_030100 Daucus carota HOM05D004673 ORTHO05D005596 2.8e-27 128.3 328 52.4
BcaB04g19351 Brassica carinata HOM05D004673 ORTHO05D005596 1.4e-26 125.9 220 62.3
Dinv00554 Davidia involucrata HOM05D004673 ORTHO05D005596 2.4e-26 125.2 309 63.8
Gorai.007G289600 Gossypium raimondii HOM05D004673 ORTHO05D005596 4.1e-26 124.4 201 66.7
Manes.03G086903 Manihot esculenta HOM05D004673 ORTHO05D005596 4.1e-26 124.4 167 50.3
THA.LOC104816063 Tarenaya hassleriana HOM05D004673 ORTHO05D005596 5.3e-26 124.0 183 73.2
QL01p016358 Quercus lobata HOM05D004673 ORTHO05D005596 7.0e-26 123.6 214 65.0
BraA03t12522Z Brassica rapa HOM05D004673 ORTHO05D005596 1.2e-25 122.9 794 59.3
Sabra01G0002200 Salix brachista HOM05D004673 ORTHO05D005596 4.5e-25 120.9 164 56.7
ECA233G4485 Erigeron canadensis HOM05D004673 ORTHO05D005596 1.7e-24 119.0 307 63.2
A03p33470 Brassica napus HOM05D004673 ORTHO05D005596 2.9e-24 118.2 794 59.2
QL01p004552 Quercus lobata HOM05D004673 ORTHO05D005596 2.9e-24 118.2 164 49.4
CARHR253220 Cardamine hirsuta HOM05D004673 ORTHO05D005596 1.1e-23 116.3 304 62.2
DCAR_030108 Daucus carota HOM05D004673 ORTHO05D005596 1.5e-23 115.9 192 66.1
QL08p003638 Quercus lobata HOM05D004673 ORTHO05D005596 1.9e-23 115.5 230 62.2
Carub.0006s3213 Capsella rubella HOM05D004673 ORTHO05D005596 2.5e-23 115.2 458 45.4
CsaV3_1G041620 Cucumis sativus L. HOM05D004673 ORTHO05D005596 3.2e-23 114.8 233 60.1
QL08p003602 Quercus lobata HOM05D004673 ORTHO05D005596 3.2e-23 114.8 321 60.1
MELO3C015573.2 Cucumis melo HOM05D004673 ORTHO05D005596 4.2e-23 114.4 225 60.4
GSVIVG01025485001 Vitis vinifera HOM05D004673 ORTHO05D005596 4.2e-23 114.4 116 60.3
DCAR_030102 Daucus carota HOM05D004673 ORTHO05D005596 9.4e-23 113.2 195 66.2
Aa31LG5G14520 Aethionema arabicum HOM05D004673 ORTHO05D005596 4.7e-22 110.9 206 64.1
ATR0697G215 Amborella trichopoda HOM05D004673 ORTHO05D005596 4.7e-22 110.9 308 60.4
COL.COLO4_13601 Corchorus olitorius HOM05D000750 ORTHO05D000714 1.4e-21 109.4 452 44.7
Cpa.g.c34637 Carica papaya HOM05D004673 ORTHO05D005596 5.2e-21 107.5 213 62.4
Carub.0003s0318 Capsella rubella HOM05D004673 ORTHO05D005596 1.2e-20 106.3 208 61.5
QL01p004727 Quercus lobata HOM05D004673 ORTHO05D005596 1.2e-20 106.3 168 43.5
DCAR_030116 Daucus carota HOM05D004673 ORTHO05D005596 2.6e-20 105.1 145 45.5
GSVIVG01025477001 Vitis vinifera HOM05D004673 ORTHO05D005596 9.7e-20 103.2 86 58.1
CARHR253250 Cardamine hirsuta HOM05D004673 ORTHO05D005596 1.7e-19 102.4 199 63.8
BcaB07g31134 Brassica carinata HOM05D004673 ORTHO05D005596 2.2e-19 102.1 796 58.3
GSVIVG01025482001 Vitis vinifera HOM05D004673 ORTHO05D005596 2.2e-19 102.1 167 40.1
ECA233G2517 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.8e-19 101.7 166 74.7
Cpa.g.sc1158.1 Carica papaya HOM05D004673 ORTHO05D005596 2.4e-18 98.6 214 60.7
QL01p004071 Quercus lobata HOM05D004673 ORTHO05D005596 2.4e-18 98.6 189 60.8
AT4G04220 Arabidopsis thaliana HOM05D004673 ORTHO05D005596 3.1e-18 98.2 316 54.7
CARHR078050 Cardamine hirsuta HOM05D004673 ORTHO05D005596 3.1e-18 98.2 206 60.2
GSVIVG01025484001 Vitis vinifera HOM05D004673 ORTHO05D005596 3.1e-18 98.2 148 43.2
AUR62032689 Chenopodium quinoa HOM05D000750 ORTHO05D000714 4.1e-18 97.8 807 53.9
HanXRQChr13g0405711 Helianthus annuus HOM05D004673 ORTHO05D005596 7.0e-18 97.1 207 61.8
Sp3g02900 Schrenkiella parvula HOM05D004673 ORTHO05D005596 1.2e-17 96.3 204 62.3
Aa31LG5G14510 Aethionema arabicum HOM05D004673 ORTHO05D005596 2.0e-17 95.5 205 62.0
DCAR_030125 Daucus carota HOM05D004673 ORTHO05D005596 3.5e-17 94.7 173 69.9
DCAR_030118 Daucus carota HOM05D004673 ORTHO05D005596 4.5e-17 94.4 145 42.1
HanXRQChr13g0405741 Helianthus annuus HOM05D004673 ORTHO05D005596 4.5e-17 94.4 145 41.4
THA.LOC104816064 Tarenaya hassleriana HOM05D004673 ORTHO05D005596 4.5e-17 94.4 149 40.9
HanXRQChr07g0187111 Helianthus annuus HOM05D004673 ORTHO05D005596 1.0e-16 93.2 211 60.7
DCAR_030115 Daucus carota HOM05D004673 ORTHO05D005596 1.1e-15 89.7 147 78.2
Thhalv10027707m.g Eutrema salsugineum HOM05D004673 ORTHO05D005596 1.9e-15 89.0 182 63.2
CARHR253370 Cardamine hirsuta HOM05D004673 ORTHO05D005596 2.5e-15 88.6 197 61.4
CARHR253280 Cardamine hirsuta HOM05D004673 ORTHO05D005596 4.2e-15 87.8 297 57.2
HPP92_013962 Vanilla planifolia HOM05D004673 ORTHO05D005596 4.2e-15 87.8 187 62.6
Lj2P776T43 Lonicera japonica HOM05D004673 ORTHO05D005596 7.2e-15 87.0 92 44.6
THA.LOC104821143 Tarenaya hassleriana HOM05D004673 ORTHO05D005596 9.4e-15 86.7 148 46.6
Lj1P522T31 Lonicera japonica HOM05D004673 ORTHO05D005596 1.2e-14 86.3 97 47.4
AL6G47840 Arabidopsis lyrata HOM05D004673 ORTHO05D005596 3.6e-14 84.7 221 56.6
HanXRQChr07g0187121 Helianthus annuus HOM05D004673 ORTHO05D005596 3.6e-14 84.7 142 38.0
A09p18980 Brassica napus HOM05D004673 ORTHO05D005596 2.3e-13 82.0 147 37.4
BraA09t37516Z Brassica rapa HOM05D004673 ORTHO05D005596 2.3e-13 82.0 147 37.4
CARHR253180 Cardamine hirsuta HOM05D004673 ORTHO05D005596 2.3e-13 82.0 189 55.6
C09p23810 Brassica napus HOM05D004673 ORTHO05D005596 3.0e-13 81.6 147 38.1
HPP92_013963 Vanilla planifolia HOM05D004673 ORTHO05D005596 8.8e-13 80.1 183 61.7
CARHR253290 Cardamine hirsuta HOM05D004673 ORTHO05D005596 4.4e-12 77.8 148 48.6
Dinv00553 Davidia involucrata HOM05D004673 ORTHO05D005596 4.4e-12 77.8 73 52.1
DCAR_030113 Daucus carota HOM05D004673 ORTHO05D005596 5.7e-12 77.4 117 42.7
QL01p004463 Quercus lobata HOM05D004673 ORTHO05D005596 5.7e-12 77.4 151 67.5
BcaC01g04387 Brassica carinata HOM05D004673 ORTHO05D005596 1.3e-11 76.3 69 58.0
Dinv09265 Davidia involucrata HOM05D004673 ORTHO05D005596 1.7e-11 75.9 160 38.8
MBI11_g31286_MAGBIO Magnolia biondii HOM05D004673 ORTHO05D005596 2.2e-11 75.5 110 50.9
QL07p015672 Quercus lobata HOM05D004673 ORTHO05D005596 2.8e-11 75.1 180 47.2
CARHR253360 Cardamine hirsuta HOM05D004673 ORTHO05D005596 3.7e-11 74.7 119 42.9
HPP92_013964 Vanilla planifolia HOM05D004673 ORTHO05D005596 3.7e-11 74.7 182 61.0
GSVIVG01025479001 Vitis vinifera HOM05D004673 ORTHO05D005596 3.7e-11 74.7 145 34.5
BcaC04g22073 Brassica carinata HOM05D000897 ORTHO05D000716 6.3e-11 73.9 144 36.8
Nn1g03613 Nelumbo nucifera HOM05D004673 ORTHO05D005596 4.1e-10 71.2 130 37.7
QL08p055485 Quercus lobata HOM05D004673 ORTHO05D005596 4.1e-10 71.2 50 62.0
Nn1g04563 Nelumbo nucifera HOM05D004673 ORTHO05D005596 5.4e-10 70.9 72 56.9
Thhalv10027711m.g Eutrema salsugineum HOM05D004673 ORTHO05D005596 7.0e-10 70.5 148 42.6
DCAR_030126 Daucus carota HOM05D004673 ORTHO05D005596 1.7e-08 65.9 141 73.8
CARHR253200 Cardamine hirsuta HOM05D004673 ORTHO05D005596 2.9e-08 65.1 78 47.4
CARHR253240 Cardamine hirsuta HOM05D004673 ORTHO05D005596 2.9e-08 65.1 71 46.5
COL.COLO4_13600 Corchorus olitorius HOM05D004673 ORTHO05D005596 3.8e-08 64.7 77 42.9
HanXRQChr07g0187551 Helianthus annuus HOM05D004673 ORTHO05D005596 3.8e-08 64.7 65 47.7
CAN.G282.33 Capsicum annuum HOM05D000053 ORTHO05D000035 8.6e-08 63.5 142 43.7
ECA240G1657 Erigeron canadensis HOM05D004673 ORTHO05D005596 8.6e-08 63.5 80 51.2
CiPaw.01G052600 Carya illinoinensis HOM05D000311 ORTHO05D000183 1.1e-07 63.2 120 39.2
Actinidia16240 Actinidia chinensis HOM05D004673 ORTHO05D005596 3.3e-07 61.6 37 75.7
BolC9t55304H Brassica oleracea HOM05D004673 ORTHO05D005596 3.3e-07 61.6 76 46.1
Prupe.2G304800 Prunus persica HOM05D000071 ORTHO05D000029 3.3e-07 61.6 112 35.7
AL3G13020 Arabidopsis lyrata HOM05D004673 ORTHO05D005596 5.5e-07 60.8 129 36.4
Solyc01g005760.3 Solanum lycopersicum HOM05D000053 ORTHO05D000035 7.2e-07 60.5 149 38.9
HanXRQChr07g0187541 Helianthus annuus HOM05D004673 ORTHO05D005596 9.5e-07 60.1 44 68.2
Gohir.A08G020024 Gossypium hirsutum HOM05D000053 ORTHO05D000035 1.6e-06 59.3 105 38.1
RcHm_v2.0_Chr1g0353361 Rosa chinensis HOM05D000053 ORTHO05D000448 2.1e-06 58.9 143 32.2
CAN.G282.19 Capsicum annuum HOM05D000053 ORTHO05D000035 2.8e-06 58.5 142 32.4
DCAR_030027 Daucus carota HOM05D002953 ORTHO05D003249 2.8e-06 58.5 47 61.7
ECA233G2057 Erigeron canadensis HOM05D000071 ORTHO05D000029 2.8e-06 58.5 212 54.7
Gorai.010G203200 Gossypium raimondii HOM05D000053 ORTHO05D000035 2.8e-06 58.5 119 34.5
HanXRQChr07g0187531 Helianthus annuus HOM05D004673 ORTHO05D005596 2.8e-06 58.5 150 32.0
Solyc01g009690.3 Solanum lycopersicum HOM05D000053 ORTHO05D000035 2.8e-06 58.5 151 42.4
AL3G13190 Arabidopsis lyrata HOM05D004673 ORTHO05D005596 3.6e-06 58.2 39 64.1
CAN.G911.11 Capsicum annuum HOM05D000053 ORTHO05D000035 3.6e-06 58.2 143 32.9
PGSC0003DMG401004726 Solanum tuberosum HOM05D000053 ORTHO05D000035 3.6e-06 58.2 143 32.9
Sopen12g034640 Solanum pennellii HOM05D000053 ORTHO05D000035 4.7e-06 57.8 143 31.5
Gohir.D08G027000 Gossypium hirsutum HOM05D000053 ORTHO05D000035 6.1e-06 57.4 113 35.4
Gorai.004G023800 Gossypium raimondii HOM05D000053 ORTHO05D000035 6.1e-06 57.4 113 35.4
RcHm_v2.0_Chr1g0316291 Rosa chinensis HOM05D000053 ORTHO05D000448 6.1e-06 57.4 142 28.9
Solyc12g099950.3 Solanum lycopersicum HOM05D000053 ORTHO05D000035 6.1e-06 57.4 143 32.9
Lj1P521T7 Lonicera japonica HOM05D004673 ORTHO05D005596 8.0e-06 57.0 36 66.7
Solyc12g100030.2 Solanum lycopersicum HOM05D000053 ORTHO05D000035 8.0e-06 57.0 143 31.5


User provided reference genes

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