Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 2.2e-117 425.6 212 100.0
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 8.6e-106 387.1 213 90.6
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 5.3e-87 324.7 226 72.1
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 2.6e-86 322.4 221 73.3
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 3.4e-86 322.0 226 73.9
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 3.4e-86 322.0 226 73.5
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 3.8e-85 318.5 226 71.7
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 1.4e-84 316.6 226 69.5
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 1.2e-83 313.5 229 71.2
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 2.1e-83 312.8 226 70.8
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 3.5e-83 312.0 226 72.1
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 7.9e-83 310.8 219 72.6
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 1.3e-82 310.1 227 71.8
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 1.1e-81 307.0 226 70.8
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 3.3e-81 305.4 225 68.4
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 3.3e-81 305.4 226 68.6
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 4.3e-81 305.1 224 69.6
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 7.3e-81 304.3 227 70.9
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 1.6e-80 303.1 226 68.1
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 1.8e-79 299.7 225 69.3
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.8e-79 299.7 225 69.3
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 9.0e-79 297.4 225 68.9
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 9.0e-79 297.4 225 68.9
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 1.2e-78 297.0 227 69.6
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 1.5e-78 296.6 226 67.3
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 2.0e-78 296.2 225 69.3
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 3.4e-78 295.4 225 68.4
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 9.9e-78 293.9 229 68.1
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 2.2e-77 292.7 229 64.6
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 2.9e-77 292.4 226 67.7
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 8.4e-77 290.8 224 64.3
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 3.2e-76 288.9 222 66.7
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 1.2e-75 287.0 226 68.1
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 1.0e-74 283.9 224 67.0
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 3.0e-74 282.3 228 64.0
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 3.9e-74 282.0 228 64.0
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 3.9e-74 282.0 228 64.0
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 5.1e-74 281.6 220 63.6
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 8.7e-74 280.8 218 64.7
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 1.5e-73 280.0 225 64.0
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 4.3e-73 278.5 226 66.4
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 9.6e-73 277.3 227 63.9
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 1.6e-72 276.6 214 65.4
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 2.1e-72 276.2 224 61.6
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 2.8e-72 275.8 226 63.7
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 8.1e-72 274.2 224 66.5
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 1.8e-71 273.1 225 63.1
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 3.1e-71 272.3 231 62.8
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 6.9e-71 271.2 224 65.6
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 6.9e-71 271.2 227 62.6
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 1.2e-70 270.4 240 60.8
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.6e-70 269.2 219 63.0
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 3.4e-70 268.9 219 63.0
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 4.5e-70 268.5 219 63.0
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 5.8e-70 268.1 168 76.8
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 1.7e-69 266.5 214 65.0
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 1.7e-69 266.5 220 61.8
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 2.2e-69 266.2 219 63.5
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 4.9e-69 265.0 233 62.2
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.4e-68 263.5 232 61.2
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 1.9e-68 263.1 218 66.5
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 1.9e-68 263.1 217 62.2
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 7.1e-68 261.2 220 62.3
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 9.3e-68 260.8 227 62.1
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.2e-67 260.4 225 60.4
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 1.2e-67 260.4 221 63.8
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 2.7e-67 259.2 224 62.1
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 3.5e-67 258.8 226 61.1
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 4.6e-67 258.5 215 63.7
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 1.8e-66 256.5 218 61.0
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 2.3e-66 256.1 228 59.6
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 3.9e-66 255.4 223 61.9
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 3.9e-66 255.4 215 62.3
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 5.1e-66 255.0 216 61.6
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 5.1e-66 255.0 215 61.4
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 5.1e-66 255.0 219 62.6
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 2.5e-65 252.7 221 62.0
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 3.3e-65 252.3 218 62.4
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 9.6e-65 250.8 228 57.9
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 1.3e-64 250.4 227 59.5
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 1.1e-63 247.3 214 60.7
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 1.8e-63 246.5 213 62.9
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 1.8e-63 246.5 212 59.0
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 2.4e-63 246.1 218 61.0
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 3.1e-63 245.7 227 58.1
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 5.3e-63 245.0 224 60.7
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 6.9e-63 244.6 228 58.3
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 1.2e-62 243.8 188 67.6
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 4.5e-62 241.9 205 63.4
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 5.8e-62 241.5 179 67.6
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 1.0e-61 240.7 219 57.1
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 1.7e-61 240.0 227 58.6
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 3.8e-61 238.8 209 59.3
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 3.8e-61 238.8 204 56.4
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 5.0e-61 238.4 227 56.8
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 6.5e-61 238.0 218 62.8
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 6.5e-61 238.0 214 58.9
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 8.4e-61 237.7 216 60.6
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 1.4e-60 236.9 209 60.3
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 1.4e-60 236.9 209 60.3
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 1.9e-60 236.5 221 56.6
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 2.5e-60 236.1 214 58.9
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 3.2e-60 235.7 214 58.9
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 4.2e-60 235.3 226 56.6
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 7.2e-60 234.6 215 59.5
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 9.3e-60 234.2 227 57.3
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 9.3e-60 234.2 213 60.6
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 1.6e-59 233.4 212 58.5
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 1.6e-59 233.4 210 58.6
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 2.1e-59 233.0 218 56.9
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 2.7e-59 232.6 143 74.1
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 3.5e-59 232.3 212 58.0
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 6.1e-59 231.5 226 55.8
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 7.9e-59 231.1 212 57.5
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 1.0e-58 230.7 212 57.5
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 1.0e-58 230.7 212 57.1
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 1.0e-58 230.7 212 57.5
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 1.0e-58 230.7 223 57.0
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 1.0e-58 230.7 202 57.4
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 1.3e-58 230.3 209 56.5
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 3.0e-58 229.2 212 59.4
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 3.9e-58 228.8 207 55.1
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 5.1e-58 228.4 213 59.2
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 6.7e-58 228.0 243 53.1
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 1.1e-57 227.3 208 58.2
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 5.7e-57 224.9 223 55.6
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 2.2e-56 223.0 177 62.7
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 2.8e-56 222.6 234 53.0
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 2.8e-56 222.6 223 54.3
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 6.3e-56 221.5 160 66.9
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 8.2e-56 221.1 226 53.5
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 1.5e-54 216.9 200 56.0
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 1.5e-54 216.9 212 55.7
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 1.5e-54 216.9 251 52.6
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 1.3e-53 213.8 219 57.5
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 1.7e-53 213.4 175 57.1
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 1.9e-52 209.9 209 54.1
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 1.2e-51 207.2 212 50.9
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 1.2e-51 207.2 141 67.4
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 1.4e-50 203.8 184 58.7
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 1.4e-50 203.8 190 56.8
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 4.3e-49 198.7 162 58.0
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 4.3e-49 198.7 162 58.0
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 4.8e-48 195.3 209 49.3
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 4.1e-47 192.2 214 49.5
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 5.3e-47 191.8 219 49.3
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 1.2e-46 190.7 151 58.3
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 1.7e-45 186.8 209 47.4
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 1.7e-45 186.8 183 51.9
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.9e-45 186.0 219 47.0
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 2.9e-45 186.0 219 47.0
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 4.2e-44 182.2 215 52.6
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 5.5e-44 181.8 220 45.9
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 7.2e-44 181.4 207 48.3
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 1.2e-43 180.6 215 48.4
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 1.6e-43 180.3 153 54.9
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 2.1e-43 179.9 213 45.1
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 4.7e-43 178.7 123 68.3
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 1.0e-42 177.6 225 48.4
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 8.8e-42 174.5 158 55.1
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 5.7e-41 171.8 160 55.6
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 2.8e-40 169.5 215 50.2
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 1.4e-39 167.2 213 44.6
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 7.0e-39 164.9 218 43.1
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 9.1e-39 164.5 103 68.9
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 1.6e-38 163.7 142 57.0
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 5.5e-36 155.2 130 53.8
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 3.6e-35 152.5 270 40.0
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 2.6e-33 146.4 82 81.7
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 7.5e-33 144.8 204 47.5
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 7.5e-33 144.8 152 55.3
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 1.2e-30 137.5 215 44.2
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 1.6e-30 137.1 220 44.5
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 1.6e-30 137.1 220 44.5
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 3.8e-29 132.5 85 74.1
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 1.6e-22 110.5 63 77.8
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 1.0e-18 97.8 54 77.8
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 3.4e-17 92.8 60 68.3
CSS0045152 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 6.6e-13 78.6 113 46.0


User provided reference genes

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