Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI60G0746 Tripterygium wilfordii HOM05D006582 ORTHO05D008313 3.2e-176 621.7 329 100.0
Thecc.03G203200 Theobroma cacao HOM05D006582 ORTHO05D008313 1.5e-125 453.4 314 77.4
PGR142G1628 Punica granatum HOM05D006582 ORTHO05D008313 5.8e-125 451.4 314 76.4
COL.COLO4_16812 Corchorus olitorius HOM05D006582 ORTHO05D008313 1.3e-124 450.3 314 76.1
Duzib068G0295 Durio zibethinus HOM05D006582 ORTHO05D008313 2.2e-124 449.5 314 75.8
Cfa016201 Carpinus fangiana HOM05D006582 ORTHO05D008313 3.7e-124 448.7 314 76.4
CSS0043436 Camellia sinensis var. sinensis HOM05D006582 ORTHO05D008313 4.9e-124 448.4 314 77.4
Dinv29249 Davidia involucrata HOM05D006582 ORTHO05D008313 4.9e-124 448.4 314 78.0
CSS0003388 Camellia sinensis var. sinensis HOM05D006582 ORTHO05D008313 1.4e-123 446.8 314 77.1
Actinidia34241 Actinidia chinensis HOM05D006582 ORTHO05D008313 2.1e-122 443.0 314 75.8
Ciclev10021376m.g Citrus clementina HOM05D006582 ORTHO05D008313 2.3e-121 439.5 315 74.9
MD07G1135900 Malus domestica HOM05D006582 ORTHO05D008313 3.9e-121 438.7 314 74.2
GSVIVG01038593001 Vitis vinifera HOM05D006582 ORTHO05D008313 3.9e-121 438.7 315 74.0
Sed0002968 Sechium edule HOM05D006582 ORTHO05D008313 8.6e-121 437.6 314 74.2
Gohir.D08G113800 Gossypium hirsutum HOM05D006582 ORTHO05D008313 1.5e-120 436.8 314 74.5
Gorai.004G122700 Gossypium raimondii HOM05D006582 ORTHO05D008313 1.9e-120 436.4 314 74.5
MELO3C005901.2 Cucumis melo HOM05D006582 ORTHO05D008313 3.3e-120 435.6 314 74.5
Hma1.2p1_0415F.1_g148010 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 4.3e-120 435.3 314 74.2
CsaV3_5G000310 Cucumis sativus L. HOM05D006582 ORTHO05D008313 7.3e-120 434.5 314 73.9
CANSAT21G1996 Cannabis sativa HOM05D006582 ORTHO05D008313 9.5e-120 434.1 314 74.5
Rhsim03G0211600 Rhododendron simsii HOM05D006582 ORTHO05D008313 2.8e-119 432.6 314 73.9
RcHm_v2.0_Chr1g0355871 Rosa chinensis HOM05D006582 ORTHO05D008313 2.8e-119 432.6 314 73.2
THA.LOC104811904 Tarenaya hassleriana HOM05D006582 ORTHO05D008313 2.8e-119 432.6 314 72.6
TAR374G0762 Trochodendron aralioides HOM05D006582 ORTHO05D008313 2.8e-119 432.6 314 73.9
CiPaw.06G044200 Carya illinoinensis HOM05D006582 ORTHO05D008313 3.6e-119 432.2 314 72.3
Sabra15G0024300 Salix brachista HOM05D006582 ORTHO05D008313 1.8e-118 429.9 314 73.2
Prupe.2G171600 Prunus persica HOM05D006582 ORTHO05D008313 2.4e-118 429.5 315 73.3
Migut.F00182 Erythranthe guttata HOM05D006582 ORTHO05D008313 3.1e-118 429.1 314 73.2
FAN03G0584 Fragaria x ananassa HOM05D006582 ORTHO05D008313 4.0e-118 428.7 314 72.6
FAN06G3963 Fragaria x ananassa HOM05D006582 ORTHO05D008313 4.0e-118 428.7 314 72.3
FvH4_7g14460 Fragaria vesca HOM05D006582 ORTHO05D008313 6.8e-118 427.9 314 72.3
FAN06G2233 Fragaria x ananassa HOM05D006582 ORTHO05D008313 6.8e-118 427.9 314 72.3
Haze_00249 Corylus avellana HOM05D006582 ORTHO05D008313 8.9e-118 427.6 342 68.7
Haze_00255 Corylus avellana HOM05D006582 ORTHO05D008313 8.9e-118 427.6 342 68.7
AT4G27750 Arabidopsis thaliana HOM05D006582 ORTHO05D008313 1.5e-117 426.8 318 71.7
Aqoxy7G00041 Aquilegia oxysepala HOM05D006582 ORTHO05D008313 2.0e-117 426.4 314 72.9
FAN01G0099 Fragaria x ananassa HOM05D006582 ORTHO05D008313 2.0e-117 426.4 314 72.3
Lj3A900T44 Lonicera japonica HOM05D006582 ORTHO05D008313 2.0e-117 426.4 314 72.6
QL09p007748 Quercus lobata HOM05D006582 ORTHO05D008313 2.0e-117 426.4 314 73.6
Thhalv10025816m.g Eutrema salsugineum HOM05D006582 ORTHO05D008313 3.4e-117 425.6 318 71.4
Aa31LG3G9690 Aethionema arabicum HOM05D006582 ORTHO05D008313 4.4e-117 425.2 314 71.3
Ah.07g205040 Amaranthus hybridus HOM05D006582 ORTHO05D008313 7.6e-117 424.5 279 77.4
Lsat_1_v5_gn_2_135281 Lactuca sativa HOM05D006582 ORTHO05D008313 7.6e-117 424.5 314 71.0
BcaC09g50542 Brassica carinata HOM05D006582 ORTHO05D008313 1.7e-116 423.3 318 71.4
BcaNung01623 Brassica carinata HOM05D006582 ORTHO05D008313 1.7e-116 423.3 318 72.0
SGA_v2.0_scaffold18G08434 Striga asiatica HOM05D006582 ORTHO05D008313 1.7e-116 423.3 314 72.6
Phvul.011G018800 Phaseolus vulgaris HOM05D006582 ORTHO05D008313 2.9e-116 422.5 331 69.5
CARHR235480 Cardamine hirsuta HOM05D006582 ORTHO05D008313 4.9e-116 421.8 314 71.3
Sp7g25720 Schrenkiella parvula HOM05D006582 ORTHO05D008313 4.9e-116 421.8 318 71.1
A01p19210 Brassica napus HOM05D006582 ORTHO05D008313 6.4e-116 421.4 314 71.7
C01p24110 Brassica napus HOM05D006582 ORTHO05D008313 6.4e-116 421.4 318 71.4
BraA01t01863Z Brassica rapa HOM05D006582 ORTHO05D008313 6.4e-116 421.4 314 71.7
VMungo1127G0470 Vigna mungo HOM05D006582 ORTHO05D008313 6.4e-116 421.4 314 72.0
SalBow4G1606 Salvia bowleyana HOM05D006582 ORTHO05D008313 8.4e-116 421.0 314 71.3
Carub.0007s1306 Capsella rubella HOM05D006582 ORTHO05D008313 1.4e-115 420.2 318 70.8
EL10Ac3g05224 Beta vulgaris HOM05D006582 ORTHO05D008313 2.4e-115 419.5 279 76.3
AUR62035580 Chenopodium quinoa HOM05D006582 ORTHO05D008313 3.2e-115 419.1 317 70.0
PGSC0003DMG402018519 Solanum tuberosum HOM05D006582 ORTHO05D008313 3.2e-115 419.1 314 72.3
AUR62006048 Chenopodium quinoa HOM05D006582 ORTHO05D008313 4.1e-115 418.7 272 77.9
AL7G24900 Arabidopsis lyrata HOM05D006582 ORTHO05D008313 5.4e-115 418.3 318 70.4
Nn6g34389 Nelumbo nucifera HOM05D006582 ORTHO05D008313 5.4e-115 418.3 319 69.9
Sopen03g022560 Solanum pennellii HOM05D006582 ORTHO05D008313 9.2e-115 417.5 314 71.7
Solyc03g082820.3 Solanum lycopersicum HOM05D006582 ORTHO05D008313 1.2e-114 417.2 314 71.3
arahy.Tifrunner.gnm1.ann1.AV4C6H Arachis hypogaea HOM05D006582 ORTHO05D008313 1.6e-114 416.8 315 70.8
arahy.Tifrunner.gnm1.ann1.D33ADG Arachis hypogaea HOM05D006582 ORTHO05D008313 1.6e-114 416.8 315 70.8
Manes.01G148600 Manihot esculenta HOM05D006582 ORTHO05D008313 1.6e-114 416.8 314 72.9
CAN.G481.47 Capsicum annuum HOM05D006582 ORTHO05D008313 3.0e-113 412.5 275 77.5
unitig_747.g21740 Utricularia gibba HOM05D006582 ORTHO05D008313 3.9e-113 412.1 314 69.4
Peaxi162Scf00740g00331 Petunia axillaris HOM05D006582 ORTHO05D008313 5.1e-113 411.8 289 75.1
HanXRQChr07g0206401 Helianthus annuus HOM05D006582 ORTHO05D008313 1.9e-112 409.8 281 76.5
Lj3g0025694 Lotus japonicus HOM05D006582 ORTHO05D008313 1.9e-112 409.8 318 70.1
BolC1t02368H Brassica oleracea HOM05D006582 ORTHO05D008313 3.3e-112 409.1 347 65.7
Medtr4g078140 Medicago truncatula HOM05D006582 ORTHO05D008313 4.3e-112 408.7 316 69.6
Glyma.11G108800 Glycine max HOM05D006582 ORTHO05D008313 9.6e-112 407.5 320 70.6
Sc19g0000750 Simmondsia chinensis HOM05D006582 ORTHO05D008313 1.2e-111 407.1 274 75.5
Cc04_g16300 Coffea canephora HOM05D006582 ORTHO05D008313 1.6e-111 406.8 314 70.4
PSO782G4269 Papaver somniferum HOM05D006582 ORTHO05D008313 6.2e-111 404.8 313 69.3
vmacro06405 Vaccinium macrocarpon HOM05D006582 ORTHO05D008313 1.1e-110 404.1 360 63.3
Hund11634 Selenicereus undatus HOM05D006582 ORTHO05D008313 1.4e-110 403.7 301 70.4
TPR.G19615 Trifolium pratense HOM05D006582 ORTHO05D008313 3.1e-110 402.5 316 68.4
Ca_18952_v3 Cicer arietinum L. HOM05D006582 ORTHO05D008313 5.2e-110 401.7 319 69.3
DCAR_008960 Daucus carota HOM05D006582 ORTHO05D008313 9.0e-110 401.0 290 73.4
Glyma.12G016600 Glycine max HOM05D006582 ORTHO05D008313 1.2e-109 400.6 317 69.7
Psat7g170040 Pisum sativum HOM05D006582 ORTHO05D008313 2.0e-109 399.8 317 68.1
Lalb_Chr03g0024361 Lupinus albus HOM05D006582 ORTHO05D008313 1.4e-107 393.7 321 65.7
ECA238G3804 Erigeron canadensis HOM05D006582 ORTHO05D008313 4.3e-104 382.1 324 66.0
Hund21029 Selenicereus undatus HOM05D006582 ORTHO05D008313 1.3e-103 380.6 314 65.3
SGA_v2.0_scaffold44G16825 Striga asiatica HOM05D006582 ORTHO05D008313 2.8e-103 379.4 314 64.6
BcaNung01628 Brassica carinata HOM05D006582 ORTHO05D008313 1.1e-102 377.5 318 66.7
MD01G1064000 Malus domestica HOM05D006582 ORTHO05D008313 1.8e-102 376.7 333 64.6
MBI04_g35986_MAGBIO Magnolia biondii HOM05D006582 ORTHO05D008313 3.5e-98 362.5 314 65.3
BcaNung01632 Brassica carinata HOM05D006582 ORTHO05D008313 3.9e-97 359.0 332 63.0
Nitab4.5_0002780g0150 Nicotiana tabacum HOM05D006582 ORTHO05D008313 3.1e-94 349.4 332 60.5
Nitab4.5_0007755g0010 Nicotiana tabacum HOM05D006582 ORTHO05D008313 1.9e-91 340.1 354 56.8
ATR0933G001 Amborella trichopoda HOM05D006582 ORTHO05D008313 9.3e-91 337.8 328 57.6
Os06g0129300 Oryza sativa ssp. japonica HOM05D006582 ORTHO05D008313 5.1e-89 332.0 274 65.3
Zm00001eb378450 Zea mays HOM05D006582 ORTHO05D008313 2.6e-85 319.7 297 59.9
Gohir.A08G102500 Gossypium hirsutum HOM05D006582 ORTHO05D008313 2.9e-84 316.2 239 70.3
Eucgr.K00407 Eucalyptus grandis HOM05D006582 ORTHO05D008313 7.9e-82 308.1 243 70.0
Hma1.2p1_0415F.1_g148020 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 3.3e-80 302.8 239 69.5
HPP92_007389 Vanilla planifolia HOM05D006582 ORTHO05D008313 2.2e-79 300.1 319 54.9
MD01G1064500 Malus domestica HOM05D006582 ORTHO05D008313 5.5e-75 285.4 204 73.5
MD01G1063600 Malus domestica HOM05D006582 ORTHO05D008313 6.3e-71 271.9 268 59.7
Potri.015G029300 Populus trichocarpa HOM05D006582 ORTHO05D008313 4.5e-69 265.8 214 68.2
CDE04G1908 Ceratophyllum demersum HOM05D006582 ORTHO05D008313 7.9e-66 255.0 291 50.2
Os10g0520900 Oryza sativa ssp. japonica HOM05D006582 ORTHO05D008313 2.4e-62 243.4 264 49.2
Cpa.g.sc3.116 Carica papaya HOM05D006582 ORTHO05D008313 2.8e-55 219.9 194 64.4
Zm00001eb021230 Zea mays HOM05D006582 ORTHO05D008313 7.0e-54 215.3 266 44.7
Mapoly0081s0017 Marchantia polymorpha HOM05D006582 ORTHO05D008313 1.1e-46 191.4 312 39.7
PGSC0003DMG401018519 Solanum tuberosum HOM05D006582 ORTHO05D008313 1.8e-46 190.7 157 68.2
SMO356G0114 Selaginella moellendorffii HOM05D001613 ORTHO05D001556 2.2e-44 183.7 285 38.2
Hma1.2p1_0512F.1_g169380 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 2.2e-39 167.2 308 43.2
AagrBONN_evm.TU.Sc2ySwM_228.4673 Anthoceros agrestis HOM05D006582 ORTHO05D008313 2.8e-39 166.8 250 40.0
Pp3c14_24810 Physcomitrium patens HOM05D006582 ORTHO05D008313 2.8e-39 166.8 254 40.2
CiPaw.05G199600 Carya illinoinensis HOM05D006582 ORTHO05D008313 8.3e-31 138.7 118 61.9
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 5.0e-28 129.4 224 38.8
Hma1.2p1_0415F.1_g148000 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 1.9e-27 127.5 88 76.1
SHI19113 Sapria himalayana HOM05D006582 ORTHO05D008313 6.6e-20 102.4 74 68.9
SHI19111 Sapria himalayana HOM05D006582 ORTHO05D008313 4.7e-18 96.3 95 56.8
Rhsim03G0115100 Rhododendron simsii HOM05D006582 ORTHO05D023108 1.6e-13 81.3 137 43.1
SEGI_26283 Sequoiadendron giganteum HOM05D006582 ORTHO05D008313 2.7e-13 80.5 81 54.3
MD07G1135700 Malus domestica HOM05D006582 ORTHO05D008313 1.6e-10 71.2 81 54.3
SEGI_35321 Sequoiadendron giganteum HOM05D006582 ORTHO05D008313 5.8e-08 62.8 57 47.4


User provided reference genes

Program Settings