Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI60G0727 Tripterygium wilfordii HOM05D002570 ORTHO05D002689 1.9e-62 242.3 115 100.0
Cfa013397 Carpinus fangiana HOM05D002570 ORTHO05D002689 6.1e-13 77.8 106 38.7
Potri.006G070200 Populus trichocarpa HOM05D002570 ORTHO05D002689 3.9e-12 75.1 74 51.4
Sabra06G0052300 Salix brachista HOM05D002570 ORTHO05D002689 3.9e-12 75.1 74 51.4
Manes.11G071400 Manihot esculenta HOM05D002570 ORTHO05D002689 5.1e-12 74.7 97 39.2
Thecc.06G132900 Theobroma cacao HOM05D002570 ORTHO05D002689 8.8e-12 73.9 106 36.8
arahy.Tifrunner.gnm1.ann1.G00P8D Arachis hypogaea HOM05D002570 ORTHO05D002689 2.0e-11 72.8 65 50.8
Dinv25488 Davidia involucrata HOM05D002570 ORTHO05D002689 2.5e-11 72.4 68 52.9
QL05p081283 Quercus lobata HOM05D002570 ORTHO05D002689 3.3e-11 72.0 96 42.7
Cc04_g05480 Coffea canephora HOM05D002570 ORTHO05D002689 4.3e-11 71.6 107 37.4
COL.COLO4_30895 Corchorus olitorius HOM05D002570 ORTHO05D002689 5.7e-11 71.2 106 35.8
Sopen03g036750 Solanum pennellii HOM05D002570 ORTHO05D002689 7.4e-11 70.9 104 35.6
Lj4g0013925 Lotus japonicus HOM05D002570 ORTHO05D002689 9.7e-11 70.5 71 49.3
Solyc03g117840.4 Solanum lycopersicum HOM05D002570 ORTHO05D002689 9.7e-11 70.5 104 35.6
Glyma.13G371800 Glycine max HOM05D002570 ORTHO05D002689 1.3e-10 70.1 106 38.7
Rhsim08G0200900 Rhododendron simsii HOM05D002570 ORTHO05D002689 1.3e-10 70.1 112 37.5
Potri.018G131900 Populus trichocarpa HOM05D002570 ORTHO05D002689 1.7e-10 69.7 107 42.1
PGR102G1262 Punica granatum HOM05D002570 ORTHO05D002689 1.7e-10 69.7 98 41.8
vmacro19088 Vaccinium macrocarpon HOM05D002570 ORTHO05D002689 1.7e-10 69.7 109 36.7
PGSC0003DMG400014220 Solanum tuberosum HOM05D002570 ORTHO05D002689 2.2e-10 69.3 104 35.6
CAN.G1008.23 Capsicum annuum HOM05D002570 ORTHO05D002689 3.7e-10 68.6 104 34.6
Duzib251G0386 Durio zibethinus HOM05D002570 ORTHO05D002689 3.7e-10 68.6 123 36.6
Manes.04G097900 Manihot esculenta HOM05D002570 ORTHO05D002689 3.7e-10 68.6 108 34.3
Nn8g40408 Nelumbo nucifera HOM05D002570 ORTHO05D002689 3.7e-10 68.6 107 35.5
Actinidia08926 Actinidia chinensis HOM05D002570 ORTHO05D002689 4.8e-10 68.2 99 37.4
Gorai.011G053600 Gossypium raimondii HOM05D002570 ORTHO05D002689 4.8e-10 68.2 106 36.8
Dinv13685 Davidia involucrata HOM05D002570 ORTHO05D002689 6.3e-10 67.8 109 38.5
Dinv21443 Davidia involucrata HOM05D002570 ORTHO05D002689 6.3e-10 67.8 109 38.5
Gohir.D10G050000 Gossypium hirsutum HOM05D002570 ORTHO05D002689 8.2e-10 67.4 109 36.7
Glyma.17G055600 Glycine max HOM05D002570 ORTHO05D002689 1.1e-09 67.0 91 38.5
Gohir.D12G159000 Gossypium hirsutum HOM05D002570 ORTHO05D002689 1.8e-09 66.2 114 35.1
Psat4g014680 Pisum sativum HOM05D002570 ORTHO05D002689 1.8e-09 66.2 65 47.7
VMungo1215G3302 Vigna mungo HOM05D002570 ORTHO05D002689 1.8e-09 66.2 69 46.4
Gohir.A05G143000 Gossypium hirsutum HOM05D002570 ORTHO05D002689 2.4e-09 65.9 100 37.0
Gohir.D05G145400 Gossypium hirsutum HOM05D002570 ORTHO05D002689 2.4e-09 65.9 100 37.0
Gorai.009G149300 Gossypium raimondii HOM05D002570 ORTHO05D002689 2.4e-09 65.9 100 37.0
arahy.Tifrunner.gnm1.ann1.ANT7GU Arachis hypogaea HOM05D002570 ORTHO05D002689 3.1e-09 65.5 65 50.8
Gohir.A12G155900 Gossypium hirsutum HOM05D002570 ORTHO05D002689 3.1e-09 65.5 114 34.2
Dinv23257 Davidia involucrata HOM05D002570 ORTHO05D002689 4.1e-09 65.1 96 37.5
Actinidia25496 Actinidia chinensis HOM05D002570 ORTHO05D002689 5.3e-09 64.7 110 34.5
Phvul.003G137400 Phaseolus vulgaris HOM05D002570 ORTHO05D002689 5.3e-09 64.7 69 44.9
Phvul.005G184200 Phaseolus vulgaris HOM05D002570 ORTHO05D002689 5.3e-09 64.7 106 35.8
Sed0009460 Sechium edule HOM05D002570 ORTHO05D002689 5.3e-09 64.7 96 37.5
Gorai.008G172100 Gossypium raimondii HOM05D002570 ORTHO05D002689 6.9e-09 64.3 114 34.2
Nitab4.5_0004194g0090 Nicotiana tabacum HOM05D002570 ORTHO05D002689 6.9e-09 64.3 104 32.7
Nitab4.5_0007293g0020 Nicotiana tabacum HOM05D002570 ORTHO05D002689 6.9e-09 64.3 104 32.7
CSS0011601 Camellia sinensis var. sinensis HOM05D002570 ORTHO05D002689 9.1e-09 63.9 95 37.9
CSS0038527 Camellia sinensis var. sinensis HOM05D002570 ORTHO05D002689 9.1e-09 63.9 95 37.9
Haze_15246 Corylus avellana HOM05D002570 ORTHO05D002689 9.1e-09 63.9 107 37.4
CsaV3_7G031670 Cucumis sativus L. HOM05D002570 ORTHO05D002689 9.1e-09 63.9 96 37.5
Gohir.A10G049400 Gossypium hirsutum HOM05D002570 ORTHO05D002689 9.1e-09 63.9 110 35.5
MELO3C023490.2 Cucumis melo HOM05D002570 ORTHO05D002689 1.2e-08 63.5 96 37.5
Oeu033446.1 Olea europaea HOM05D002570 ORTHO05D002689 1.2e-08 63.5 84 40.5
Ciclev10010203m.g Citrus clementina HOM05D002570 ORTHO05D002689 1.5e-08 63.2 67 46.3
Peaxi162Scf00314g00938 Petunia axillaris HOM05D002570 ORTHO05D002689 1.5e-08 63.2 104 33.7
ClCG09G003530 Citrullus lanatus HOM05D002570 ORTHO05D002689 2.0e-08 62.8 96 37.5
FvH4_4g06680 Fragaria vesca HOM05D030384 ORTHO05D002689 2.0e-08 62.8 77 42.9
FAN12G3444 Fragaria x ananassa HOM05D030384 ORTHO05D002689 2.0e-08 62.8 77 42.9
Prupe.3G106900 Prunus persica HOM05D002570 ORTHO05D002689 2.6e-08 62.4 106 36.8
TAR383G0799 Trochodendron aralioides HOM05D002570 ORTHO05D002689 2.6e-08 62.4 105 34.3
Duzib192G0671 Durio zibethinus HOM05D002570 ORTHO05D002689 3.4e-08 62.0 110 36.4
Medtr2g105430 Medicago truncatula HOM05D002570 ORTHO05D002689 3.4e-08 62.0 65 52.3
Migut.D01154 Erythranthe guttata HOM05D002570 ORTHO05D002689 4.5e-08 61.6 89 38.2
SalBow1G2645 Salvia bowleyana HOM05D002570 ORTHO05D002689 4.5e-08 61.6 85 38.8
ClCG10G012800 Citrullus lanatus HOM05D002570 ORTHO05D002689 5.9e-08 61.2 105 38.1
Hma1.2p1_1208F.1_g267175 Hydrangea macrophylla HOM05D002570 ORTHO05D002689 7.7e-08 60.8 96 33.3
MBI14_g19442_MAGBIO Magnolia biondii HOM05D002570 ORTHO05D002689 7.7e-08 60.8 95 37.9
Oeu012866.1 Olea europaea HOM05D002570 ORTHO05D002689 7.7e-08 60.8 89 34.8
MSTRG.22832 Avicennia marina HOM05D002570 ORTHO05D002689 1.0e-07 60.5 89 37.1
Thecc.02G311400 Theobroma cacao HOM05D002570 ORTHO05D002689 1.0e-07 60.5 68 45.6
Medtr4g126400 Medicago truncatula HOM05D002570 ORTHO05D002689 1.3e-07 60.1 75 42.7
Sed0010699 Sechium edule HOM05D002570 ORTHO05D002689 1.3e-07 60.1 96 35.4
SGA_v2.0_scaffold74G24622 Striga asiatica HOM05D002570 ORTHO05D002689 1.3e-07 60.1 109 32.1
MSTRG.11212 Avicennia marina HOM05D002570 ORTHO05D002689 1.7e-07 59.7 89 37.1
Eucgr.J03139 Eucalyptus grandis HOM05D002570 ORTHO05D002689 1.7e-07 59.7 105 31.4
RcHm_v2.0_Chr2g0131671 Rosa chinensis HOM05D002570 ORTHO05D002689 1.7e-07 59.7 106 34.0
Lalb_Chr12g0199761 Lupinus albus HOM05D002570 ORTHO05D002689 2.2e-07 59.3 96 38.5
Glyma.13G103400 Glycine max HOM05D002570 ORTHO05D002689 2.9e-07 58.9 89 42.7
TPR.G27566 Trifolium pratense HOM05D002570 ORTHO05D002689 2.9e-07 58.9 75 45.3
CsaV3_3G032640 Cucumis sativus L. HOM05D002570 ORTHO05D002689 3.8e-07 58.5 104 33.7
Lj3g0010275 Lotus japonicus HOM05D002570 ORTHO05D002689 3.8e-07 58.5 105 35.2
Potri.001G037400 Populus trichocarpa HOM05D002570 ORTHO05D002689 3.8e-07 58.5 109 33.9
FAN22G1225 Fragaria x ananassa HOM05D002570 ORTHO05D002689 8.5e-07 57.4 67 44.8
CiPaw.01G051100 Carya illinoinensis HOM05D002570 ORTHO05D002689 1.1e-06 57.0 96 37.5
Sabra03G0137200 Salix brachista HOM05D002570 ORTHO05D002689 1.1e-06 57.0 108 34.3
Glyma.15G001900 Glycine max HOM05D002570 ORTHO05D002689 1.4e-06 56.6 95 36.8
Ciclev10026849m.g Citrus clementina HOM05D002570 ORTHO05D002689 1.9e-06 56.2 96 33.3
unitig_27.g24959 Utricularia gibba HOM05D002570 ORTHO05D002689 1.9e-06 56.2 97 33.0
arahy.Tifrunner.gnm1.ann1.NFUI4Q Arachis hypogaea HOM05D002570 ORTHO05D002689 3.2e-06 55.5 94 40.4
Migut.I00642 Erythranthe guttata HOM05D002570 ORTHO05D002689 3.2e-06 55.5 109 33.0
FvH4_6g28000 Fragaria vesca HOM05D002570 ORTHO05D002689 3.2e-06 55.5 110 35.5
FAN14G4539 Fragaria x ananassa HOM05D002570 ORTHO05D002689 3.2e-06 55.5 110 35.5
MD17G1229300 Malus domestica HOM05D002570 ORTHO05D002689 3.2e-06 55.5 109 32.1
Sabra01G0026300 Salix brachista HOM05D002570 ORTHO05D002689 4.2e-06 55.1 69 42.0
arahy.Tifrunner.gnm1.ann1.Z5UTBB Arachis hypogaea HOM05D002570 ORTHO05D002689 5.5e-06 54.7 96 39.6
FAN02G4288 Fragaria x ananassa HOM05D002570 ORTHO05D002689 5.5e-06 54.7 113 33.6
MBI16_g27293_MAGBIO Magnolia biondii HOM05D002570 ORTHO05D002689 5.5e-06 54.7 98 33.7
FAN05G0139 Fragaria x ananassa HOM05D002570 ORTHO05D002689 7.2e-06 54.3 110 35.5
FAN05G5383 Fragaria x ananassa HOM05D002570 ORTHO05D002689 7.2e-06 54.3 110 35.5
Lsat_1_v5_gn_1_30640 Lactuca sativa HOM05D002570 ORTHO05D002689 7.2e-06 54.3 98 32.7
Prupe.1G069600 Prunus persica HOM05D002570 ORTHO05D002689 7.2e-06 54.3 65 43.1
FAN09G2432 Fragaria x ananassa HOM05D002570 ORTHO05D002689 9.4e-06 53.9 110 35.5
Zm00001eb274770 Zea mays HOM05D002570 ORTHO05D002689 9.4e-06 53.9 99 32.3


User provided reference genes

Program Settings