Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI60G0613 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 0.0e+00 1164.8 572 100.0
TWI34G1796 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 7.6e-290 1000.0 568 88.4
Manes.04G087600 Manihot esculenta HOM05D005105 ORTHO05D006244 1.0e-225 786.9 558 69.7
Prupe.3G310100 Prunus persica HOM05D005105 ORTHO05D006244 2.5e-224 782.3 546 70.0
Potri.001G325500 Populus trichocarpa HOM05D005105 ORTHO05D006244 8.0e-223 777.3 551 71.1
Thecc.04G041900 Theobroma cacao HOM05D005105 ORTHO05D006244 1.3e-220 770.0 562 68.3
MD09G1007000 Malus domestica HOM05D005105 ORTHO05D006244 3.5e-218 761.9 564 67.4
QL02p070577 Quercus lobata HOM05D005105 ORTHO05D006244 8.0e-215 750.7 570 66.8
Duzib147G0369 Durio zibethinus HOM05D005105 ORTHO05D006244 1.8e-214 749.6 558 66.7
Ciclev10014761m.g Citrus clementina HOM05D005105 ORTHO05D006244 6.8e-214 747.7 569 66.1
FAN09G0463 Fragaria x ananassa HOM05D005105 ORTHO05D006244 8.9e-214 747.3 564 66.3
RcHm_v2.0_Chr2g0176111 Rosa chinensis HOM05D005105 ORTHO05D006244 2.0e-213 746.1 566 66.4
FAN14G3030 Fragaria x ananassa HOM05D005105 ORTHO05D006244 3.4e-213 745.3 564 66.8
FAN02G1943 Fragaria x ananassa HOM05D005105 ORTHO05D006244 9.8e-213 743.8 564 66.0
Solyc02g082210.4 Solanum lycopersicum HOM05D005105 ORTHO05D006244 2.2e-212 742.7 561 64.3
Gorai.006G044700 Gossypium raimondii HOM05D005105 ORTHO05D006244 1.1e-211 740.3 585 63.8
TAR629G0447 Trochodendron aralioides HOM05D005105 ORTHO05D006244 1.6e-210 736.5 546 66.1
FAN05G2765 Fragaria x ananassa HOM05D005105 ORTHO05D006244 7.8e-210 734.2 581 64.2
Gorai.001G274700 Gossypium raimondii HOM05D005105 ORTHO05D006244 7.8e-210 734.2 558 65.1
CANSAT21G1015 Cannabis sativa HOM05D005105 ORTHO05D006244 1.3e-209 733.4 548 65.3
Gohir.A07G231500 Gossypium hirsutum HOM05D005105 ORTHO05D006244 1.3e-209 733.4 558 65.1
Gohir.D07G238700 Gossypium hirsutum HOM05D005105 ORTHO05D006244 1.7e-209 733.0 558 65.4
Glyma.16G052500 Glycine max HOM05D005105 ORTHO05D006244 6.6e-209 731.1 545 66.1
Migut.F00035 Erythranthe guttata HOM05D005105 ORTHO05D006244 7.3e-208 727.6 565 63.5
Lj1g0026609 Lotus japonicus HOM05D005105 ORTHO05D006244 1.2e-207 726.9 545 65.1
PGR142G1816 Punica granatum HOM05D005105 ORTHO05D006244 1.6e-207 726.5 551 65.9
arahy.Tifrunner.gnm1.ann1.JMV5LB Arachis hypogaea HOM05D005105 ORTHO05D006244 2.8e-207 725.7 575 62.6
CiPaw.03G004800 Carya illinoinensis HOM05D005105 ORTHO05D006244 1.8e-206 723.0 508 69.9
Oeu020395.1 Olea europaea HOM05D005105 ORTHO05D006244 1.5e-205 719.9 552 64.9
Nitab4.5_0011381g0040 Nicotiana tabacum HOM05D005105 ORTHO05D006244 4.4e-205 718.4 549 64.8
CsaV3_5G024330 Cucumis sativus L. HOM05D005105 ORTHO05D006244 1.7e-204 716.5 560 63.2
arahy.Tifrunner.gnm1.ann1.B1CDD0 Arachis hypogaea HOM05D005105 ORTHO05D006244 4.9e-204 714.9 552 63.8
ClCG01G008700 Citrullus lanatus HOM05D005105 ORTHO05D006244 6.4e-204 714.5 559 63.5
SalBow4G0131 Salvia bowleyana HOM05D005105 ORTHO05D006244 8.3e-204 714.1 565 62.7
MELO3C025087.2 Cucumis melo HOM05D005105 ORTHO05D006244 4.1e-203 711.8 583 61.4
Nn3g16360 Nelumbo nucifera HOM05D005105 ORTHO05D006244 5.4e-203 711.4 550 64.9
Haze_14911 Corylus avellana HOM05D005105 ORTHO05D006244 1.6e-202 709.9 537 67.0
VMungo1383G1917 Vigna mungo HOM05D005105 ORTHO05D006244 2.7e-202 709.1 545 65.0
Sed0022814 Sechium edule HOM05D005105 ORTHO05D006244 3.5e-202 708.8 545 64.8
Lalb_Chr00c40g0412501 Lupinus albus HOM05D005105 ORTHO05D006244 4.6e-202 708.4 546 64.7
Cc07_g01060 Coffea canephora HOM05D005105 ORTHO05D006244 6.0e-202 708.0 560 63.9
Cfa007197 Carpinus fangiana HOM05D005105 ORTHO05D006244 1.7e-201 706.4 561 64.5
PSO017G6125 Papaver somniferum HOM05D005105 ORTHO05D006244 1.7e-201 706.4 538 64.9
Phvul.001G090000 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 2.3e-201 706.1 545 65.1
Aqoxy5G03244_Aqoxy5G03245 Aquilegia oxysepala HOM05D005105 ORTHO05D006244 8.6e-201 704.1 535 65.0
Medtr7g026520 Medicago truncatula HOM05D005105 ORTHO05D006244 1.5e-200 703.4 552 63.6
PSO478G4366 Papaver somniferum HOM05D005105 ORTHO05D006244 9.5e-200 700.7 538 63.9
Lj2g0026571 Lotus japonicus HOM05D005105 ORTHO05D006244 2.8e-199 699.1 549 64.7
Ca_07318_v3 Cicer arietinum L. HOM05D005105 ORTHO05D006244 4.7e-199 698.4 548 63.0
GSVIVG01033038001 Vitis vinifera HOM05D005105 ORTHO05D006244 8.0e-199 697.6 489 70.6
HanXRQChr17g0551611 Helianthus annuus HOM05D005105 ORTHO05D006244 2.3e-198 696.0 552 62.5
Rhsim08G0041000 Rhododendron simsii HOM05D005105 ORTHO05D006244 4.4e-197 691.8 549 63.4
Thhalv10003939m.g Eutrema salsugineum HOM05D005105 ORTHO05D006244 1.3e-196 690.3 552 64.1
Psat3g181600 Pisum sativum HOM05D005105 ORTHO05D006244 2.9e-196 689.1 552 62.5
THA.LOC104825638 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 3.7e-196 688.7 563 61.5
Sp2g16080 Schrenkiella parvula HOM05D005105 ORTHO05D006244 3.2e-195 685.6 551 63.2
Sabra16G0208000 Salix brachista HOM05D005105 ORTHO05D006244 4.1e-195 685.3 518 66.8
Sc09g0007730 Simmondsia chinensis HOM05D005105 ORTHO05D006244 5.4e-195 684.9 540 64.3
AUR62003394 Chenopodium quinoa HOM05D005105 ORTHO05D006244 9.2e-195 684.1 571 61.1
AT3G26950 Arabidopsis thaliana HOM05D005105 ORTHO05D006244 1.2e-194 683.7 553 62.6
Atru.chr6.2614 Acer truncatum HOM05D005105 ORTHO05D006244 6.0e-194 681.4 474 67.9
EL10Ac6g15451 Beta vulgaris HOM05D005105 ORTHO05D006244 6.0e-194 681.4 561 59.7
BcaC06g31032 Brassica carinata HOM05D005105 ORTHO05D006244 1.7e-193 679.9 551 62.8
GSVIVG01008594001 Vitis vinifera HOM05D005105 ORTHO05D006244 8.6e-193 677.6 582 59.5
Lj7A613T64 Lonicera japonica HOM05D005105 ORTHO05D006244 1.1e-192 677.2 602 58.5
AL5G15980 Arabidopsis lyrata HOM05D005105 ORTHO05D006244 9.5e-192 674.1 551 61.9
Glyma.16G146100 Glycine max HOM05D005105 ORTHO05D006244 9.5e-192 674.1 549 62.3
ECA246G4542 Erigeron canadensis HOM05D005105 ORTHO05D006244 6.2e-191 671.4 549 60.1
Carub.0005s0514 Capsella rubella HOM05D005105 ORTHO05D006244 8.1e-191 671.0 543 62.2
C07p36060 Brassica napus HOM05D005105 ORTHO05D006244 1.4e-190 670.2 566 60.8
Lsat_1_v5_gn_0_23961 Lactuca sativa HOM05D005105 ORTHO05D006244 2.6e-189 666.0 540 61.3
DCAR_015209 Daucus carota HOM05D005105 ORTHO05D006244 7.5e-189 664.5 594 57.6
VMungo0464G0185 Vigna mungo HOM05D005105 ORTHO05D006244 6.4e-188 661.4 540 63.1
vmacro18364 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 2.4e-187 659.4 616 56.5
Nitab4.5_0011717g0030 Nicotiana tabacum HOM05D005105 ORTHO05D006244 7.1e-187 657.9 549 60.3
BraA06t27085Z Brassica rapa HOM05D005105 ORTHO05D006244 9.2e-187 657.5 575 59.8
AUR62029433 Chenopodium quinoa HOM05D005105 ORTHO05D006244 3.5e-186 655.6 533 61.4
Actinidia36228 Actinidia chinensis HOM05D005105 ORTHO05D006244 1.7e-185 653.3 494 65.2
BcaC06g33873 Brassica carinata HOM05D005105 ORTHO05D006244 1.5e-184 650.2 550 60.5
BolC7t44120H Brassica oleracea HOM05D005105 ORTHO05D006244 2.5e-184 649.4 550 60.7
THA.LOC104805319 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 1.6e-183 646.7 564 58.2
A06p41600 Brassica napus HOM05D005105 ORTHO05D006244 6.2e-183 644.8 550 60.4
ATR0582G106 Amborella trichopoda HOM05D005105 ORTHO05D006244 3.1e-182 642.5 498 63.1
HanXRQChr05g0155591 Helianthus annuus HOM05D005105 ORTHO05D006244 5.2e-182 641.7 551 59.2
vmacro19146 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 2.1e-178 629.8 624 54.2
CDE06G1277 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 7.3e-176 621.3 545 57.1
Aa31LG2G5630 Aethionema arabicum HOM05D005105 ORTHO05D006244 1.6e-175 620.2 589 55.2
DCAR_007509 Daucus carota HOM05D005105 ORTHO05D006244 3.1e-174 615.9 548 58.0
Phvul.004G070700 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 2.0e-173 613.2 549 57.9
Os11g0507400 Oryza sativa ssp. japonica HOM05D005105 ORTHO05D006244 6.6e-169 598.2 476 60.9
Cpa.g.sc70.110 Carica papaya HOM05D005105 ORTHO05D006244 2.2e-164 583.2 444 67.6
Duzib264G1310 Durio zibethinus HOM05D005105 ORTHO05D006244 3.8e-164 582.4 551 55.9
FvH4_6g53950 Fragaria vesca HOM05D005105 ORTHO05D006244 1.1e-163 580.9 366 75.1
Gohir.A09G038300 Gossypium hirsutum HOM05D005105 ORTHO05D006244 3.2e-163 579.3 449 65.3
Hma1.2p1_0093F.1_g046930 Hydrangea macrophylla HOM05D005105 ORTHO05D006244 1.5e-157 560.5 387 67.2
SHI04027 Sapria himalayana HOM05D005105 ORTHO05D006244 1.3e-156 557.4 610 51.3
Dinv33309 Davidia involucrata HOM05D005105 ORTHO05D006244 7.1e-155 551.6 394 69.3
CARHR148130 Cardamine hirsuta HOM05D005105 ORTHO05D006244 9.3e-155 551.2 387 67.7
Atru.chr6.2613 Acer truncatum HOM05D005105 ORTHO05D006244 2.7e-154 549.7 348 73.9
Eucgr.I01623 Eucalyptus grandis HOM05D005105 ORTHO05D006244 2.8e-151 539.7 347 73.5
unitig_0.g1913 Utricularia gibba HOM05D005105 ORTHO05D006244 1.8e-150 537.0 433 61.9
Prupe.3G297400 Prunus persica HOM05D005105 ORTHO05D006244 1.5e-144 517.3 544 53.3
Peaxi162Scf00331g00014 Petunia axillaris HOM05D005105 ORTHO05D006244 2.5e-144 516.5 586 49.3
MD17G1010700 Malus domestica HOM05D005105 ORTHO05D006244 8.5e-140 501.5 344 70.3
Lsat_1_v5_gn_5_10960 Lactuca sativa HOM05D005105 ORTHO05D006244 6.1e-138 495.4 547 50.6
COL.COLO4_13307 Corchorus olitorius HOM05D005105 ORTHO05D006244 4.5e-133 479.2 534 50.7
CSS0048130 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 2.3e-129 466.8 347 65.4
Lj5A92G44 Lonicera japonica HOM05D005105 ORTHO05D006244 1.7e-127 460.7 327 68.2
SMO180G0002 Selaginella moellendorffii HOM05D005105 ORTHO05D006244 1.1e-126 458.0 441 49.7
CSS0029044 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 1.1e-123 448.0 321 67.0
ECA246G1012 Erigeron canadensis HOM05D005105 ORTHO05D006244 1.1e-123 448.0 468 51.9
Sopen02g026870 Solanum pennellii HOM05D005105 ORTHO05D006244 4.8e-119 432.6 301 67.4
PGSC0003DMG400013660 Solanum tuberosum HOM05D005105 ORTHO05D006244 4.8e-119 432.6 301 67.4
TWI34G0688 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 7.0e-118 428.7 222 93.2
HPP92_009891 Vanilla planifolia HOM05D005105 ORTHO05D006244 1.9e-115 420.6 319 62.7
Pp3c21_14570 Physcomitrium patens HOM05D005105 ORTHO05D006244 1.8e-113 414.1 519 43.4
Glyma.02G065000 Glycine max HOM05D005105 ORTHO05D006244 5.2e-113 412.5 355 60.6
Pp3c1_35010 Physcomitrium patens HOM05D005105 ORTHO05D006244 9.7e-112 408.3 494 43.1
PSO063G6475 Papaver somniferum HOM05D005105 ORTHO05D006244 2.8e-103 380.2 302 62.3
THA.LOC104813335 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 2.2e-95 354.0 253 66.0
Actinidia18328 Actinidia chinensis HOM05D005105 ORTHO05D006244 2.7e-93 347.1 255 67.1
Dinv23187 Davidia involucrata HOM05D005105 ORTHO05D006244 2.5e-91 340.5 244 68.4
AagrBONN_evm.TU.Sc2ySwM_340.35 Anthoceros agrestis HOM05D005105 ORTHO05D006244 8.0e-82 308.9 495 35.2
HPP92_009881 Vanilla planifolia HOM05D005105 ORTHO05D006244 3.0e-76 290.4 249 57.0
Actinidia18329 Actinidia chinensis HOM05D005105 ORTHO05D006244 4.3e-75 286.6 254 56.3
Gohir.D09G039750 Gossypium hirsutum HOM05D005105 ORTHO05D006244 2.0e-64 251.1 161 70.8
CDE05G2066 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 4.2e-62 243.4 146 77.4
FAN05G0264 Fragaria x ananassa HOM05D005105 ORTHO05D006244 1.1e-59 235.3 230 53.5
HPP92_009897 Vanilla planifolia HOM05D005105 ORTHO05D006244 7.1e-54 216.1 207 52.2
Actinidia25549 Actinidia chinensis HOM05D005105 ORTHO05D006244 5.6e-51 206.5 137 72.3
Actinidia05877 Actinidia chinensis HOM05D000139 ORTHO05D000103 1.2e-40 172.2 226 46.9
CBR_g57654 Chara braunii HOM05D000004 ORTHO05D000002 2.7e-37 161.0 163 44.8
Lj5A92G45 Lonicera japonica HOM05D005105 ORTHO05D006244 1.4e-33 148.7 123 56.9
Gohir.D09G039801 Gossypium hirsutum HOM05D005105 ORTHO05D006244 3.1e-33 147.5 175 50.3
SGA_v2.0_scaffold253G45172 Striga asiatica HOM05D005105 ORTHO05D006244 9.0e-33 146.0 165 49.1
Dinv23186 Davidia involucrata HOM05D005105 ORTHO05D006244 1.2e-32 145.6 163 52.8
Actinidia25550 Actinidia chinensis HOM05D005105 ORTHO05D006244 5.8e-32 143.3 150 44.7
Atru.chr6.2612 Acer truncatum HOM05D005105 ORTHO05D006244 5.5e-30 136.7 165 51.5
Ah.03g148260 Amaranthus hybridus HOM05D005105 ORTHO05D006244 1.6e-29 135.2 152 55.9
Glyma.19G097001 Glycine max HOM05D005105 ORTHO05D006244 2.2e-26 124.8 89 69.7
Dinv33310 Davidia involucrata HOM05D005105 ORTHO05D006244 3.7e-26 124.0 135 51.1
Glyma.19G097101 Glycine max HOM05D005105 ORTHO05D006244 5.3e-25 120.2 84 71.4
CSS0040735 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 1.4e-09 68.9 115 43.5
SEGI_15377 Sequoiadendron giganteum HOM05D005105 ORTHO05D006244 5.3e-09 67.0 67 50.7
HPP92_009880 Vanilla planifolia HOM05D005105 ORTHO05D006244 1.3e-07 62.4 71 42.3
CSS0042485 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 2.5e-06 58.2 102 40.2


User provided reference genes

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