Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 3.6e-132 474.9 245 100.0
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 3.2e-120 435.3 245 91.4
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 5.7e-101 371.3 246 77.6
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 9.0e-99 364.0 246 76.4
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 1.5e-98 363.2 247 77.3
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.0e-98 362.8 246 76.0
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 5.9e-98 361.3 246 75.6
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 5.9e-98 361.3 246 75.6
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 1.3e-97 360.1 250 76.8
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 5.0e-97 358.2 247 74.9
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 5.0e-97 358.2 246 75.6
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 8.5e-97 357.5 248 75.0
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 1.1e-96 357.1 263 71.9
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 4.2e-96 355.1 245 75.5
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 4.2e-96 355.1 249 75.1
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 7.2e-96 354.4 248 74.6
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 6.1e-95 351.3 247 72.9
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 6.1e-95 351.3 255 73.7
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 6.1e-95 351.3 252 75.0
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.3e-94 350.1 246 72.4
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 1.8e-94 349.7 246 74.8
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 1.8e-94 349.7 246 74.0
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 1.8e-94 349.7 247 74.9
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 2.3e-94 349.4 246 72.4
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 2.3e-94 349.4 245 73.9
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 3.0e-94 349.0 249 74.3
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 3.0e-94 349.0 249 73.9
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 3.9e-94 348.6 247 74.5
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 5.1e-94 348.2 247 73.7
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 5.1e-94 348.2 247 74.1
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 6.7e-94 347.8 246 72.0
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 6.7e-94 347.8 247 74.1
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 8.7e-94 347.4 250 72.8
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 8.7e-94 347.4 248 74.2
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.1e-93 347.1 246 73.2
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 1.9e-93 346.3 249 73.5
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 1.9e-93 346.3 249 73.5
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 3.3e-93 345.5 247 74.1
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 4.3e-93 345.1 246 73.6
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 7.4e-93 344.4 245 73.9
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.3e-92 343.6 246 72.8
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.3e-92 343.6 246 72.8
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.3e-92 343.6 246 72.8
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 1.6e-92 343.2 246 72.8
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.8e-92 342.4 246 72.4
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.8e-92 342.4 245 71.8
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 2.8e-92 342.4 247 72.5
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 8.2e-92 340.9 250 73.2
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 8.2e-92 340.9 245 74.3
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 1.1e-91 340.5 245 72.2
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 1.8e-91 339.7 251 70.5
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 5.3e-91 338.2 245 71.8
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 6.9e-91 337.8 244 73.4
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 6.9e-91 337.8 247 72.1
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 1.2e-90 337.0 248 71.4
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 1.5e-90 336.7 255 73.3
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 2.0e-90 336.3 250 70.8
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 2.0e-90 336.3 246 72.0
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 2.6e-90 335.9 247 72.5
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 3.4e-90 335.5 246 69.5
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 3.4e-90 335.5 248 71.0
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 4.5e-90 335.1 248 71.0
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 1.7e-89 333.2 247 69.2
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 8.5e-89 330.9 248 71.0
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 1.1e-88 330.5 245 71.4
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 2.5e-88 329.3 250 72.4
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 4.2e-88 328.6 257 69.3
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 5.5e-88 328.2 250 71.6
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 9.4e-88 327.4 247 68.4
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 9.4e-88 327.4 242 69.8
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 2.1e-87 326.2 247 70.0
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 2.1e-87 326.2 248 71.0
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 3.6e-87 325.5 244 70.1
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 6.1e-87 324.7 250 70.8
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 7.9e-87 324.3 247 68.8
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 7.9e-87 324.3 254 68.5
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 1.0e-86 323.9 251 69.3
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.0e-86 323.9 248 69.8
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.8e-86 323.2 236 71.2
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 1.8e-86 323.2 228 73.7
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 1.8e-86 323.2 247 70.9
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 1.8e-86 323.2 240 71.2
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 2.3e-86 322.8 249 67.5
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 3.0e-86 322.4 250 69.2
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 6.7e-86 321.2 248 69.0
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 6.7e-86 321.2 250 68.8
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 8.8e-86 320.9 249 68.3
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 8.8e-86 320.9 248 69.0
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 1.1e-85 320.5 250 67.2
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 1.1e-85 320.5 244 67.6
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.1e-85 320.5 232 72.8
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 2.6e-85 319.3 251 68.1
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 2.6e-85 319.3 246 68.3
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 3.3e-85 318.9 248 68.5
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 3.3e-85 318.9 245 68.6
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 9.7e-85 317.4 246 68.3
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 1.7e-84 316.6 247 67.2
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 2.8e-84 315.8 243 67.1
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 4.8e-84 315.1 247 66.0
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 4.8e-84 315.1 243 71.6
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 1.1e-83 313.9 312 59.6
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 4.1e-83 312.0 215 72.6
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 2.0e-82 309.7 321 57.3
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 3.4e-82 308.9 257 68.1
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 5.9e-82 308.1 251 64.9
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 5.9e-82 308.1 257 67.7
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 2.9e-81 305.8 255 64.3
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 2.9e-81 305.8 251 66.5
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 8.5e-81 304.3 237 67.5
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 1.9e-80 303.1 245 65.7
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 1.9e-80 303.1 244 66.4
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 3.2e-80 302.4 256 64.5
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 5.5e-80 301.6 249 65.9
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 7.2e-80 301.2 244 65.2
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 7.2e-80 301.2 237 69.2
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 3.6e-79 298.9 238 68.1
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 4.7e-79 298.5 243 65.0
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 4.7e-79 298.5 264 64.4
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 1.0e-78 297.4 252 65.9
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 5.2e-78 295.0 246 64.6
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 5.2e-78 295.0 246 64.6
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 5.2e-78 295.0 246 64.6
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 2.0e-77 293.1 216 70.4
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 7.4e-77 291.2 241 66.0
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 2.8e-76 289.3 200 73.0
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 3.7e-76 288.9 246 63.4
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 3.7e-76 288.9 251 62.9
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 4.8e-76 288.5 218 69.7
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 4.8e-76 288.5 227 69.2
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 1.3e-73 280.4 248 58.5
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 1.7e-73 280.0 244 61.1
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 1.5e-69 266.9 249 57.8
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 2.4e-67 259.6 386 45.1
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 3.1e-67 259.2 230 60.4
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 7.0e-67 258.1 256 55.1
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 2.2e-65 253.1 241 60.2
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 1.6e-63 246.9 239 59.0
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 1.0e-62 244.2 150 79.3
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 4.5e-58 228.8 145 75.9
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 1.7e-57 226.9 246 50.4
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 1.9e-56 223.4 252 50.8
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.6e-55 220.3 167 67.7
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 1.6e-55 220.3 136 77.9
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 4.7e-55 218.8 213 57.3
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 8.0e-55 218.0 167 67.1
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 1.5e-53 213.8 248 50.8
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 8.6e-49 198.0 268 46.6
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 4.4e-45 185.7 194 55.7
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 1.3e-44 184.1 117 78.6
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 2.9e-44 183.0 111 78.4
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 8.3e-44 181.4 286 40.6
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 1.6e-34 150.6 128 69.5
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 4.6e-34 149.1 286 38.5
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 5.0e-33 145.6 285 36.8
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.5e-32 144.1 128 64.1
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 9.9e-29 131.3 97 73.2
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 2.7e-26 123.2 95 64.2
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 3.0e-25 119.8 91 60.4
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 6.2e-23 112.1 102 60.8
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 6.8e-22 108.6 73 75.3
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 8.9e-22 108.2 69 72.5
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 2.9e-20 103.2 73 71.2
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 1.1e-16 91.3 110 37.3
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 1.2e-15 87.8 121 52.1
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 2.8e-15 86.7 93 44.1
PGSC0003DMG400045666 Solanum tuberosum HOM05D004155 ORTHO05D004837 2.9e-12 76.6 78 57.7
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 4.9e-12 75.9 81 50.6
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 3.2e-11 73.2 133 45.9
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 1.7e-09 67.4 148 33.1
ECA247G1153 Erigeron canadensis HOM05D004155 ORTHO05D004837 3.0e-09 66.6 92 48.9


User provided reference genes

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