Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI60G0507 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 0.0e+00 1294.3 672 100.0
TWI34G1341 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 5.1e-245 851.3 658 72.2
Potri.007G124150 Populus trichocarpa HOM05D004311 ORTHO05D005145 1.4e-96 358.2 653 41.2
Manes.11G116001 Manihot esculenta HOM05D004311 ORTHO05D005145 1.8e-96 357.8 705 40.1
Potri.017G036200 Populus trichocarpa HOM05D004311 ORTHO05D005145 5.7e-95 352.8 655 40.9
Sabra17G0023900 Salix brachista HOM05D004311 ORTHO05D005145 1.2e-92 345.1 670 40.3
Haze_00714 Corylus avellana HOM05D004311 ORTHO05D005145 4.7e-81 306.6 648 37.7
Thecc.04G184200 Theobroma cacao HOM05D004311 ORTHO05D005145 4.7e-81 306.6 490 43.5
Atru.chr3.1596 Acer truncatum HOM05D004311 ORTHO05D005145 6.8e-80 302.8 628 38.7
Cfa015780 Carpinus fangiana HOM05D004311 ORTHO05D005145 2.0e-76 291.2 336 50.6
Dinv22688 Davidia involucrata HOM05D004311 ORTHO05D005145 5.0e-75 286.6 676 36.8
QL10p045440 Quercus lobata HOM05D004311 ORTHO05D005145 5.0e-75 286.6 808 33.3
Gohir.A10G134400 Gossypium hirsutum HOM05D004311 ORTHO05D005145 1.5e-74 285.0 495 40.8
Gorai.011G145800 Gossypium raimondii HOM05D004311 ORTHO05D005145 4.3e-74 283.5 463 42.5
Gohir.D10G132100 Gossypium hirsutum HOM05D004311 ORTHO05D005145 2.1e-73 281.2 463 42.5
Atru.chr5.2612 Acer truncatum HOM05D004311 ORTHO05D005145 2.8e-73 280.8 424 44.8
Ciclev10019191m.g Citrus clementina HOM05D004311 ORTHO05D005145 4.0e-72 276.9 558 39.8
CiPaw.01G102900 Carya illinoinensis HOM05D004311 ORTHO05D005145 1.5e-71 275.0 629 36.6
GSVIVG01013563001 Vitis vinifera HOM05D004311 ORTHO05D005145 1.4e-69 268.5 419 41.1
Duzib268G0197 Durio zibethinus HOM05D004311 ORTHO05D005145 3.9e-67 260.4 274 51.5
Dinv44218 Davidia involucrata HOM05D004311 ORTHO05D005145 5.6e-66 256.5 679 35.2
Actinidia35905 Actinidia chinensis HOM05D004311 ORTHO05D005145 2.1e-65 254.6 644 34.5
THA.LOC104821356 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 8.3e-62 242.7 399 41.4
COL.COLO4_24387 Corchorus olitorius HOM05D004311 ORTHO05D005145 3.0e-59 234.2 349 44.1
Eucgr.A00251 Eucalyptus grandis HOM05D004311 ORTHO05D005145 6.6e-59 233.0 542 36.3
Sopen09g036480 Solanum pennellii HOM05D004311 ORTHO05D005145 1.1e-58 232.3 397 42.3
FAN17G0085 Fragaria x ananassa HOM05D004311 ORTHO05D005145 7.3e-58 229.6 372 40.3
PGR083G0820 Punica granatum HOM05D004311 ORTHO05D005145 2.1e-57 228.0 379 41.2
Solyc09g098560.2 Solanum lycopersicum HOM05D004311 ORTHO05D005145 6.2e-57 226.5 375 43.2
FvH4_4g11290 Fragaria vesca HOM05D004311 ORTHO05D005145 5.2e-56 223.4 384 38.8
FAN07G0445 Fragaria x ananassa HOM05D004311 ORTHO05D005145 1.7e-54 218.4 384 39.3
arahy.Tifrunner.gnm1.ann1.TTS68P Arachis hypogaea HOM05D004311 ORTHO05D005145 2.9e-54 217.6 406 39.7
Sed0012126 Sechium edule HOM05D004311 ORTHO05D005145 4.1e-53 213.8 610 32.0
TAR375G1135 Trochodendron aralioides HOM05D004311 ORTHO05D005145 5.4e-53 213.4 243 48.1
arahy.Tifrunner.gnm1.ann1.D3CYL9 Arachis hypogaea HOM05D004311 ORTHO05D005145 9.2e-53 212.6 408 39.0
Nitab4.5_0004962g0030 Nicotiana tabacum HOM05D004311 ORTHO05D005145 1.2e-52 212.2 350 39.7
Rhsim09G0031800 Rhododendron simsii HOM05D004311 ORTHO05D005145 1.6e-52 211.8 459 33.8
Duzib151G0942 Durio zibethinus HOM05D004311 ORTHO05D005145 2.1e-52 211.5 407 39.3
Nitab4.5_0006710g0020 Nicotiana tabacum HOM05D004311 ORTHO05D005145 2.1e-52 211.5 412 39.1
Phvul.007G004100 Phaseolus vulgaris HOM05D004311 ORTHO05D005145 2.1e-52 211.5 364 41.8
Medtr1g116530 Medicago truncatula HOM05D004311 ORTHO05D005145 3.5e-52 210.7 321 44.5
Ca_11399_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 4.6e-52 210.3 343 41.4
Ca_11402_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 4.6e-52 210.3 343 41.4
Ca_29593_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 4.6e-52 210.3 343 41.4
CANSAT11G1749 Cannabis sativa HOM05D004311 ORTHO05D005145 7.8e-52 209.5 286 45.1
Aa31LG2G1780 Aethionema arabicum HOM05D004311 ORTHO05D005145 6.6e-51 206.5 445 35.1
Cc03_g13030 Coffea canephora HOM05D004311 ORTHO05D005145 1.5e-50 205.3 271 44.6
Lj5g0018220 Lotus japonicus HOM05D004311 ORTHO05D005145 9.5e-50 202.6 394 38.1
Nn2g11494 Nelumbo nucifera HOM05D004311 ORTHO05D005145 4.7e-49 200.3 344 39.0
Sc19g0002150 Simmondsia chinensis HOM05D004311 ORTHO05D005145 6.2e-49 199.9 306 42.2
CsaV3_4G003570 Cucumis sativus L. HOM05D004311 ORTHO05D005145 1.1e-48 199.1 491 34.0
Lalb_Chr21g0307601 Lupinus albus HOM05D004311 ORTHO05D005145 1.4e-48 198.7 240 48.8
Lsat_1_v5_gn_6_54900 Lactuca sativa HOM05D004311 ORTHO05D005145 1.8e-48 198.4 393 36.1
HanXRQChr07g0186701 Helianthus annuus HOM05D004311 ORTHO05D005145 2.4e-48 198.0 388 35.1
Hund12225 Selenicereus undatus HOM05D004311 ORTHO05D005145 6.8e-48 196.4 245 46.5
Sp4g24640 Schrenkiella parvula HOM05D004311 ORTHO05D005145 8.9e-48 196.1 585 32.3
EL10Ac3g06308 Beta vulgaris HOM05D004311 ORTHO05D005145 1.2e-47 195.7 335 38.2
MBI08_g33649_MAGBIO Magnolia biondii HOM05D004311 ORTHO05D005145 1.3e-46 192.2 284 40.8
Prupe.1G188800 Prunus persica HOM05D004311 ORTHO05D005145 1.3e-46 192.2 535 34.0
TPR.G10413 Trifolium pratense HOM05D004311 ORTHO05D005145 2.2e-46 191.4 279 45.2
CAN.G710.65 Capsicum annuum HOM05D004311 ORTHO05D005145 2.9e-46 191.0 370 37.8
SalBow3G3821 Salvia bowleyana HOM05D004311 ORTHO05D005145 2.9e-46 191.0 400 37.2
Glyma.20G245800 Glycine max HOM05D004311 ORTHO05D005145 3.8e-46 190.7 368 38.6
AUR62002610 Chenopodium quinoa HOM05D004311 ORTHO05D005145 8.4e-46 189.5 333 38.1
Oeu007717.1 Olea europaea HOM05D004311 ORTHO05D005145 1.1e-45 189.1 301 42.2
Lj6A60T46 Lonicera japonica HOM05D004311 ORTHO05D005145 1.4e-45 188.7 191 52.9
SGA_v2.0_scaffold12G06156 Striga asiatica HOM05D004311 ORTHO05D005145 4.1e-45 187.2 381 36.7
AUR62030033 Chenopodium quinoa HOM05D004311 ORTHO05D005145 7.1e-45 186.4 325 38.2
MELO3C017696.2 Cucumis melo HOM05D004311 ORTHO05D005145 9.2e-45 186.0 227 47.1
Carub.0004s2496 Capsella rubella HOM05D004311 ORTHO05D005145 1.2e-44 185.7 541 31.4
VMungo0720G0448 Vigna mungo HOM05D004311 ORTHO05D005145 2.1e-44 184.9 372 38.7
Glyma.10G295800 Glycine max HOM05D004311 ORTHO05D005145 3.5e-44 184.1 261 45.2
A05p03080 Brassica napus HOM05D004311 ORTHO05D005145 3.0e-43 181.0 364 36.8
BcaC02g12437 Brassica carinata HOM05D004311 ORTHO05D005145 3.9e-43 180.6 361 37.4
Peaxi162Scf00319g00915 Petunia axillaris HOM05D004311 ORTHO05D005145 3.9e-43 180.6 419 34.6
vmacro00589 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 3.9e-43 180.6 187 50.8
C04p69770 Brassica napus HOM05D004311 ORTHO05D005145 5.1e-43 180.3 340 36.5
BcaC02g07234 Brassica carinata HOM05D004311 ORTHO05D005145 1.1e-42 179.1 421 33.3
RcHm_v2.0_Chr4g0407531 Rosa chinensis HOM05D004311 ORTHO05D005145 5.6e-42 176.8 185 53.0
Actinidia33018 Actinidia chinensis HOM05D004311 ORTHO05D005145 1.2e-41 175.6 221 47.5
BraA05t19299Z Brassica rapa HOM05D004311 ORTHO05D005145 1.2e-41 175.6 364 36.0
BcaNung03232 Brassica carinata HOM05D004311 ORTHO05D005145 1.6e-41 175.3 407 35.4
BolC4t22005H Brassica oleracea HOM05D004311 ORTHO05D005145 1.6e-41 175.3 362 36.7
C04p03710 Brassica napus HOM05D004311 ORTHO05D005145 2.1e-41 174.9 362 36.7
MSTRG.20570 Avicennia marina HOM05D004311 ORTHO05D005145 2.8e-41 174.5 410 37.1
Nitab4.5_0000526g0040 Nicotiana tabacum HOM05D004311 ORTHO05D005145 6.2e-41 173.3 149 61.7
AT1G54380 Arabidopsis thaliana HOM05D004311 ORTHO05D005145 2.4e-40 171.4 506 32.6
CARHR055450 Cardamine hirsuta HOM05D004311 ORTHO05D005145 1.5e-39 168.7 381 33.9
PSO675G5961 Papaver somniferum HOM05D004311 ORTHO05D005145 7.6e-39 166.4 252 41.7
Aqoxy5G04052 Aquilegia oxysepala HOM05D004311 ORTHO05D005145 1.3e-38 165.6 492 31.9
CDE02G0781 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 1.7e-38 165.2 442 33.5
Psat6g241440 Pisum sativum HOM05D004311 ORTHO05D005145 2.2e-38 164.9 386 36.0
MD04G1038300 Malus domestica HOM05D004311 ORTHO05D005145 2.9e-38 164.5 119 67.2
Sabra07G0100500 Salix brachista HOM05D004311 ORTHO05D005145 3.8e-38 164.1 448 34.6
HPP92_009171 Vanilla planifolia HOM05D004311 ORTHO05D005145 4.9e-38 163.7 236 42.4
ATR0743G139 Amborella trichopoda HOM05D004311 ORTHO05D005145 2.4e-37 161.4 234 42.7
unitig_8.g3035 Utricularia gibba HOM05D004311 ORTHO05D005145 2.4e-37 161.4 249 38.6
PSO017G7323 Papaver somniferum HOM05D004311 ORTHO05D005145 2.1e-36 158.3 251 41.4
CDE09G0340 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 3.0e-35 154.5 412 32.5
ClCG07G015850 Citrullus lanatus HOM05D004311 ORTHO05D005145 6.6e-35 153.3 104 70.2
Migut.G01038 Erythranthe guttata HOM05D004311 ORTHO05D005145 6.6e-35 153.3 287 41.5
Sabra17G0023400 Salix brachista HOM05D004311 ORTHO05D005145 1.1e-34 152.5 192 48.4
SHI06503 Sapria himalayana HOM05D004311 ORTHO05D005145 1.5e-34 152.1 159 56.6
DCAR_028443 Daucus carota HOM05D004311 ORTHO05D005145 5.3e-32 143.7 337 33.8
Os11g0293300 Oryza sativa ssp. japonica HOM05D004311 ORTHO05D005145 4.6e-28 130.6 260 37.3
Zm00001eb248350 Zea mays HOM05D004311 ORTHO05D005145 3.0e-27 127.9 234 38.0
AagrBONN_evm.TU.Sc2ySwM_228.1282 Anthoceros agrestis HOM05D004311 ORTHO05D005145 6.7e-27 126.7 135 48.1
Mapoly0064s0042 Marchantia polymorpha HOM05D004311 ORTHO05D005145 6.7e-27 126.7 262 34.0
Pp3c18_5230 Physcomitrium patens HOM05D004311 ORTHO05D005145 1.1e-26 125.9 259 34.4
Lalb_Chr02g0144311 Lupinus albus HOM05D004311 ORTHO05D005145 2.5e-26 124.8 147 52.4
CBR_g48670 Chara braunii HOM05D004311 ORTHO05D005145 2.8e-25 121.3 117 50.4
SEGI_09077 Sequoiadendron giganteum HOM05D004311 ORTHO05D005145 5.3e-24 117.1 195 39.0
SMO351G0426 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 3.8e-22 110.9 104 51.0
SMO273G0052 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 4.9e-22 110.5 104 51.0
BcaB06g29252 Brassica carinata HOM05D004311 ORTHO05D005145 1.6e-20 105.5 262 32.4
Nitab4.5_0001049g0080 Nicotiana tabacum HOM05D004311 ORTHO05D005145 2.1e-20 105.1 292 31.5
Prupe.1G189100 Prunus persica HOM05D004311 ORTHO05D005145 3.5e-20 104.4 113 50.4
FAN22G0235 Fragaria x ananassa HOM05D004311 ORTHO05D005820 5.1e-19 100.5 143 42.0
BcaNung05216 Brassica carinata HOM05D004311 ORTHO05D005145 8.7e-19 99.8 264 32.6
SMO174G0256 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 1.6e-17 95.5 99 46.5
BolC4t28477H Brassica oleracea HOM05D004311 ORTHO05D005145 2.9e-14 84.7 251 30.3
CSS0021437 Camellia sinensis var. sinensis HOM05D004311 ORTHO05D005145 4.9e-14 84.0 485 28.7
CANSAT78G0609 Cannabis sativa HOM05D004311 ORTHO05D005145 2.5e-13 81.6 181 34.8
CANSAT01G2758 Cannabis sativa HOM05D004311 ORTHO05D005145 7.1e-13 80.1 200 34.5
MD04G1038400 Malus domestica HOM05D004311 ORTHO05D005145 6.0e-12 77.0 487 26.5
RcHm_v2.0_Chr4g0407521 Rosa chinensis HOM05D004311 ORTHO05D005145 1.0e-11 76.3 151 33.1
Cpa.g.sc73.18 Carica papaya HOM05D004311 ORTHO05D005145 2.3e-11 75.1 123 39.0
TAR362G0891 Trochodendron aralioides HOM05D015611 ORTHO05D005145 8.7e-11 73.2 128 37.5
MCO03G002 Micromonas commoda HOM05D004311 ORTHO05D005145 1.1e-10 72.8 91 45.1
THA.LOC104798849 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 1.9e-10 72.0 270 29.6
CARHR137590 Cardamine hirsuta HOM05D004311 ORTHO05D005145 7.4e-10 70.1 47 74.5
Cpa.g.sc1876.1 Carica papaya HOM05D004311 ORTHO05D005145 7.4e-10 70.1 100 43.0
PGSC0003DMG400021611 Solanum tuberosum HOM05D004311 ORTHO05D005145 9.7e-10 69.7 152 36.2
vmacro00590 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 1.4e-08 65.9 173 31.2
AL4G41050 Arabidopsis lyrata HOM05D004311 ORTHO05D005145 1.8e-08 65.5 290 24.8
TAR374G0693 Trochodendron aralioides HOM05D015611 ORTHO05D005145 3.1e-08 64.7 71 43.7
Hma1.2p1_0429F.1_g151120 Hydrangea macrophylla HOM05D004311 ORTHO05D005145 1.2e-07 62.8 161 30.4
Oeu050349.1 Olea europaea HOM05D004311 ORTHO05D005145 2.0e-07 62.0 135 36.3
PSO170G3519 Papaver somniferum HOM05D015611 ORTHO05D026019 4.5e-07 60.8 67 46.3
Cre09.g405650 Chlamydomonas reinhardtii HOM05D004311 ORTHO05D005145 3.8e-06 57.8 79 38.0
Thhalv10016741m.g Eutrema salsugineum HOM05D004311 ORTHO05D005145 8.5e-06 56.6 350 25.4


User provided reference genes

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