Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI60G0503 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 4.4e-135 484.6 237 100.0
TWI34G0276 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 7.3e-122 440.7 237 90.7
COL.COLO4_34143 Corchorus olitorius HOM05D006780 ORTHO05D008455 8.5e-94 347.4 214 76.6
Cfa013613 Carpinus fangiana HOM05D006780 ORTHO05D008455 1.2e-92 343.6 244 70.9
Thecc.05G208000 Theobroma cacao HOM05D006780 ORTHO05D008455 4.6e-92 341.7 214 75.7
MSTRG.17 Avicennia marina HOM05D006780 ORTHO05D008455 1.5e-90 336.7 244 66.8
Eucgr.K00108 Eucalyptus grandis HOM05D006780 ORTHO05D008455 2.0e-90 336.3 254 65.4
Nn6g33682 Nelumbo nucifera HOM05D006780 ORTHO05D008455 3.3e-90 335.5 248 65.7
Gohir.A05G389500 Gossypium hirsutum HOM05D006780 ORTHO05D008455 5.7e-90 334.7 214 74.3
Ciclev10012613m.g Citrus clementina HOM05D006780 ORTHO05D008455 9.7e-90 334.0 244 68.0
Gorai.012G029700 Gossypium raimondii HOM05D006780 ORTHO05D008455 1.7e-89 333.2 214 73.8
Hma1.2p1_0115F.1_g055870 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 2.2e-89 332.8 213 74.2
Lj3A891T47 Lonicera japonica HOM05D006780 ORTHO05D008455 2.8e-89 332.4 255 66.7
Dinv29183 Davidia involucrata HOM05D006780 ORTHO05D008455 6.3e-89 331.3 227 70.5
Gorai.004G260300 Gossypium raimondii HOM05D006780 ORTHO05D008455 6.3e-89 331.3 214 73.8
SalBow2G3389 Salvia bowleyana HOM05D006780 ORTHO05D008455 8.2e-89 330.9 248 67.3
CSS0033689 Camellia sinensis var. sinensis HOM05D006780 ORTHO05D008455 1.1e-88 330.5 216 72.2
Gohir.D04G027000 Gossypium hirsutum HOM05D006780 ORTHO05D008455 1.1e-88 330.5 214 72.9
TAR629G2389 Trochodendron aralioides HOM05D006780 ORTHO05D008455 1.8e-88 329.7 248 66.1
Atru.chr12.2100 Acer truncatum HOM05D006780 ORTHO05D008455 2.4e-88 329.3 214 74.8
Gohir.1Z049572 Gossypium hirsutum HOM05D006780 ORTHO05D008455 3.1e-88 328.9 214 73.4
QL09p026712 Quercus lobata HOM05D006780 ORTHO05D008455 3.1e-88 328.9 243 68.7
PGR142G1227 Punica granatum HOM05D006780 ORTHO05D008455 4.1e-88 328.6 238 66.0
TAR636G2448 Trochodendron aralioides HOM05D006780 ORTHO05D008455 9.1e-88 327.4 249 65.9
Manes.09G119100 Manihot esculenta HOM05D006780 ORTHO05D008455 2.0e-87 326.2 247 69.2
Migut.F00963 Erythranthe guttata HOM05D006780 ORTHO05D008455 3.4e-87 325.5 219 71.7
Cc02_g00520 Coffea canephora HOM05D006780 ORTHO05D008455 5.9e-87 324.7 215 72.1
Gohir.A08G223700 Gossypium hirsutum HOM05D006780 ORTHO05D008455 1.3e-86 323.6 214 72.4
Actinidia08727 Actinidia chinensis HOM05D006780 ORTHO05D008455 2.2e-86 322.8 248 66.1
Actinidia34294 Actinidia chinensis HOM05D006780 ORTHO05D008455 2.2e-86 322.8 246 65.4
Hund14300 Selenicereus undatus HOM05D006780 ORTHO05D008455 3.8e-86 322.0 217 68.7
Nitab4.5_0000011g0110 Nicotiana tabacum HOM05D006780 ORTHO05D008455 1.1e-85 320.5 215 70.7
Nitab4.5_0007683g0020 Nicotiana tabacum HOM05D006780 ORTHO05D008455 1.1e-85 320.5 215 71.2
GSVIVG01024468001 Vitis vinifera HOM05D006780 ORTHO05D008455 1.4e-85 320.1 214 71.5
Lsat_1_v5_gn_8_3841 Lactuca sativa HOM05D006780 ORTHO05D008455 3.2e-85 318.9 253 63.2
CiPaw.08G043400 Carya illinoinensis HOM05D006780 ORTHO05D008455 7.2e-85 317.8 225 69.8
Prupe.2G322900 Prunus persica HOM05D006780 ORTHO05D008455 7.2e-85 317.8 222 69.8
CANSAT21G1469 Cannabis sativa HOM05D006780 ORTHO05D008455 1.2e-84 317.0 236 67.4
THA.LOC104805709 Tarenaya hassleriana HOM05D006780 ORTHO05D008455 1.2e-84 317.0 235 66.0
vmacro10178 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 2.1e-84 316.2 272 57.7
vmacro06481 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 2.7e-84 315.8 271 60.1
RcHm_v2.0_Chr1g0383391 Rosa chinensis HOM05D006780 ORTHO05D008455 6.1e-84 314.7 236 66.5
HanXRQChr08g0225871 Helianthus annuus HOM05D006780 ORTHO05D008455 1.0e-83 313.9 253 63.2
SGA_v2.0_scaffold165G38216 Striga asiatica HOM05D006780 ORTHO05D008455 5.1e-83 311.6 243 63.8
Sopen07g001650 Solanum pennellii HOM05D006780 ORTHO05D008455 2.6e-82 309.3 238 63.9
Sc07g0007970 Simmondsia chinensis HOM05D006780 ORTHO05D008455 3.3e-82 308.9 236 66.1
Solyc07g005550.4 Solanum lycopersicum HOM05D006780 ORTHO05D008455 5.7e-82 308.1 238 63.9
Sabra04G0017100 Salix brachista HOM05D006780 ORTHO05D008455 1.3e-81 307.0 214 70.6
CAN.G160.70 Capsicum annuum HOM05D006780 ORTHO05D008455 3.7e-81 305.4 216 67.6
FAN03G1919 Fragaria x ananassa HOM05D006780 ORTHO05D008455 4.8e-81 305.1 220 69.5
FAN10G0287 Fragaria x ananassa HOM05D006780 ORTHO05D008455 4.8e-81 305.1 257 62.3
unitig_52.g16857 Utricularia gibba HOM05D006780 ORTHO05D008455 4.8e-81 305.1 215 68.8
FAN10G2247 Fragaria x ananassa HOM05D006780 ORTHO05D008455 1.1e-80 303.9 257 62.3
arahy.Tifrunner.gnm1.ann1.T2A0GP Arachis hypogaea HOM05D006780 ORTHO05D008455 1.8e-80 303.1 214 67.8
arahy.Tifrunner.gnm1.ann1.T66758 Arachis hypogaea HOM05D006780 ORTHO05D008455 1.8e-80 303.1 214 67.8
CiPaw.07G182200 Carya illinoinensis HOM05D006780 ORTHO05D008455 2.4e-80 302.8 197 74.1
FvH4_7g33420 Fragaria vesca HOM05D006780 ORTHO05D008455 3.1e-80 302.4 257 61.5
ECA233G5194 Erigeron canadensis HOM05D006780 ORTHO05D008455 4.1e-80 302.0 199 73.4
FAN01G1241 Fragaria x ananassa HOM05D006780 ORTHO05D008455 4.1e-80 302.0 257 61.5
Potri.004G030100 Populus trichocarpa HOM05D006780 ORTHO05D008455 4.1e-80 302.0 216 69.0
Aa31LG2G2290 Aethionema arabicum HOM05D006780 ORTHO05D008455 7.0e-80 301.2 245 63.3
Ah.12g058490 Amaranthus hybridus HOM05D006780 ORTHO05D008455 1.5e-79 300.1 216 66.2
MD01G1232400 Malus domestica HOM05D006780 ORTHO05D008455 2.0e-79 299.7 254 63.4
Thhalv10022468m.g Eutrema salsugineum HOM05D006780 ORTHO05D008455 3.5e-79 298.9 223 65.9
Lj3g0022672 Lotus japonicus HOM05D006780 ORTHO05D008455 4.5e-79 298.5 228 66.2
Rhsim03G0219000 Rhododendron simsii HOM05D006780 ORTHO05D008455 5.9e-79 298.1 279 56.3
VMungo1127G1066 Vigna mungo HOM05D006780 ORTHO05D008455 7.7e-79 297.7 226 65.0
Rhsim09G0211500 Rhododendron simsii HOM05D006780 ORTHO05D008455 1.0e-78 297.4 285 53.3
AUR62010478 Chenopodium quinoa HOM05D006780 ORTHO05D008455 3.8e-78 295.4 214 65.4
AT2G44870 Arabidopsis thaliana HOM05D006780 ORTHO05D008455 6.5e-78 294.7 230 65.2
Hma1.2p1_0115F.1_g055860 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 6.5e-78 294.7 240 62.9
AUR62030415 Chenopodium quinoa HOM05D006780 ORTHO05D008455 1.9e-77 293.1 214 65.0
Aqoxy3G02533 Aquilegia oxysepala HOM05D006780 ORTHO05D008455 2.5e-77 292.7 248 58.9
MD07G1304300 Malus domestica HOM05D006780 ORTHO05D008455 2.5e-77 292.7 253 63.2
Psat7g145160 Pisum sativum HOM05D006780 ORTHO05D008455 1.2e-76 290.4 196 69.9
Sp5g19750 Schrenkiella parvula HOM05D006780 ORTHO05D008455 1.2e-76 290.4 236 61.9
Peaxi162Scf00542g00012 Petunia axillaris HOM05D006780 ORTHO05D008455 1.6e-76 290.0 223 63.7
BraA02t06361Z Brassica rapa HOM05D006780 ORTHO05D008455 2.1e-76 289.7 236 61.9
BcaC03g14678 Brassica carinata HOM05D006780 ORTHO05D008455 4.7e-76 288.5 236 61.4
A02p13050 Brassica napus HOM05D006780 ORTHO05D008455 4.7e-76 288.5 236 61.4
BolC2t08258H Brassica oleracea HOM05D006780 ORTHO05D008455 4.7e-76 288.5 236 61.4
Ca_19681_v3 Cicer arietinum L. HOM05D006780 ORTHO05D008455 5.2e-75 285.0 196 69.4
TPR.G31925 Trifolium pratense HOM05D006780 ORTHO05D008455 6.7e-75 284.6 196 68.9
Glyma.12G002200 Glycine max HOM05D006780 ORTHO05D008455 8.8e-75 284.3 225 64.4
AL2G19830 Arabidopsis lyrata HOM05D006780 ORTHO05D008455 1.1e-74 283.9 219 66.7
C02p21190 Brassica napus HOM05D006780 ORTHO05D008455 1.5e-74 283.5 250 58.4
Medtr4g033475 Medicago truncatula HOM05D006780 ORTHO05D008455 2.6e-74 282.7 196 68.9
ClCG01G004850 Citrullus lanatus HOM05D006780 ORTHO05D008455 3.3e-74 282.3 196 67.9
Phvul.011G002600 Phaseolus vulgaris HOM05D006780 ORTHO05D008455 5.7e-74 281.6 231 60.2
BcaB05g24083 Brassica carinata HOM05D006780 ORTHO05D008455 9.7e-74 280.8 246 58.5
Glyma.09G234600 Glycine max HOM05D006780 ORTHO05D008455 1.7e-73 280.0 251 59.0
Sed0025589 Sechium edule HOM05D006780 ORTHO05D008455 2.2e-73 279.6 198 67.7
MELO3C005448.2 Cucumis melo HOM05D006780 ORTHO05D008455 2.8e-73 279.3 196 66.3
PGSC0003DMG400011181 Solanum tuberosum HOM05D006780 ORTHO05D008455 1.1e-72 277.3 315 49.2
DCAR_008997 Daucus carota HOM05D006780 ORTHO05D008455 1.4e-72 276.9 252 56.0
Carub.0002s1056 Capsella rubella HOM05D006780 ORTHO05D008455 1.8e-72 276.6 248 59.3
CDE02G2736 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 2.6e-71 272.7 252 54.4
CsaV3_5G005070 Cucumis sativus L. HOM05D006780 ORTHO05D008455 3.5e-71 272.3 198 65.2
PSO063G3320 Papaver somniferum HOM05D006780 ORTHO05D008455 4.2e-69 265.4 219 61.2
PSO782G3414 Papaver somniferum HOM05D006780 ORTHO05D008455 4.2e-69 265.4 219 61.6
CARHR056600 Cardamine hirsuta HOM05D006780 ORTHO05D008455 1.4e-67 260.4 223 59.2
CDE11G0765 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 8.8e-67 257.7 214 56.1
Dinv17273 Davidia involucrata HOM05D006780 ORTHO05D008455 8.8e-67 257.7 160 75.6
CDE02G3388 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 1.2e-66 257.3 214 57.0
EL10Ac5g12581 Beta vulgaris HOM05D006780 ORTHO05D008455 1.5e-66 256.9 275 48.7
Zm00001eb024190 Zea mays HOM05D006780 ORTHO05D008455 1.7e-65 253.4 228 53.9
Duzib177G1050 Durio zibethinus HOM05D006780 ORTHO05D008455 3.5e-63 245.7 214 57.5
Duzib128G1164 Durio zibethinus HOM05D006780 ORTHO05D008455 2.2e-62 243.0 214 57.5
ATR0829G223 Amborella trichopoda HOM05D006780 ORTHO05D008455 2.6e-58 229.6 205 56.6
CDE11G0053 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 1.3e-57 227.3 214 51.4
HPP92_025668 Vanilla planifolia HOM05D006780 ORTHO05D008455 7.5e-50 201.4 232 49.1
SMO301G0031 Selaginella moellendorffii HOM05D006780 ORTHO05D008455 2.7e-39 166.4 185 43.8
Cpa.g.sc39.45 Carica papaya HOM05D006780 ORTHO05D008455 1.2e-36 157.5 148 59.5
Pp3c8_4270 Physcomitrium patens HOM05D006780 ORTHO05D008455 5.2e-35 152.1 187 39.0
Mapoly0133s0055 Marchantia polymorpha HOM05D006780 ORTHO05D008455 1.2e-31 141.0 150 44.0
CBR_g642 Chara braunii HOM05D006780 ORTHO05D008455 4.0e-27 125.9 193 37.8
CSS0031860 Camellia sinensis var. sinensis HOM05D001955 ORTHO05D001917 3.4e-18 96.3 104 55.8
Os10g0569000 Oryza sativa ssp. japonica HOM05D006780 ORTHO05D008455 6.6e-14 82.0 94 48.9


User provided reference genes

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