Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI60G0435 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 2.3e-69 265.4 127 100.0
TWI15G0944 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 7.3e-68 260.4 127 97.6
Nn6g34007 Nelumbo nucifera HOM05D005100 ORTHO05D005607 5.8e-65 250.8 127 94.5
Nn1g01053 Nelumbo nucifera HOM05D005100 ORTHO05D005607 9.9e-65 250.0 127 92.9
Manes.01G079000 Manihot esculenta HOM05D005100 ORTHO05D005607 6.4e-64 247.3 127 93.7
Manes.02G037900 Manihot esculenta HOM05D005100 ORTHO05D005607 8.3e-64 246.9 127 92.1
Lalb_Chr05g0225721 Lupinus albus HOM05D005100 ORTHO05D005607 2.4e-63 245.4 127 92.9
TAR374G1281 Trochodendron aralioides HOM05D005100 ORTHO05D005607 2.4e-63 245.4 127 95.3
PGR042G3212 Punica granatum HOM05D005100 ORTHO05D005607 4.1e-63 244.6 127 92.9
Cpa.g.sc276.5 Carica papaya HOM05D005100 ORTHO05D005607 7.1e-63 243.8 127 92.1
arahy.Tifrunner.gnm1.ann1.1R27RR Arachis hypogaea HOM05D005100 ORTHO05D005607 9.2e-63 243.4 127 92.1
MSTRG.12083 Avicennia marina HOM05D005100 ORTHO05D005607 9.2e-63 243.4 127 90.6
Thecc.03G254700 Theobroma cacao HOM05D005100 ORTHO05D005607 2.1e-62 242.3 127 91.3
Sed0015074 Sechium edule HOM05D005100 ORTHO05D005607 3.5e-62 241.5 126 91.3
Potri.001G122200 Populus trichocarpa HOM05D005100 ORTHO05D005607 4.6e-62 241.1 127 91.3
MELO3C013951.2 Cucumis melo HOM05D005100 ORTHO05D005607 6.0e-62 240.7 126 90.5
CsaV3_3G002850 Cucumis sativus L. HOM05D005100 ORTHO05D005607 6.0e-62 240.7 126 90.5
Lalb_Chr09g0334171 Lupinus albus HOM05D005100 ORTHO05D005607 6.0e-62 240.7 127 90.6
Ciclev10022867m.g Citrus clementina HOM05D005100 ORTHO05D005607 7.8e-62 240.4 127 92.1
QL12p012809 Quercus lobata HOM05D005100 ORTHO05D005607 7.8e-62 240.4 126 92.1
CiPaw.11G152200 Carya illinoinensis HOM05D005100 ORTHO05D005607 1.3e-61 239.6 126 91.3
Duzib205G1156 Durio zibethinus HOM05D005100 ORTHO05D005607 2.3e-61 238.8 125 91.2
Eucgr.E00445 Eucalyptus grandis HOM05D005100 ORTHO05D005607 2.3e-61 238.8 127 92.1
Glyma.05G058000 Glycine max HOM05D005100 ORTHO05D005607 2.3e-61 238.8 127 90.6
Hma1.2p1_1414F.1_g281930 Hydrangea macrophylla HOM05D005100 ORTHO05D005607 2.3e-61 238.8 127 89.8
Phvul.001G061600 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 2.3e-61 238.8 127 90.6
Ca_21953_v3 Cicer arietinum L. HOM05D005100 ORTHO05D005607 3.0e-61 238.4 127 89.8
Migut.A00959 Erythranthe guttata HOM05D005100 ORTHO05D005607 3.0e-61 238.4 127 90.6
Phvul.003G219300 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 3.0e-61 238.4 127 89.8
SalBow4G2670 Salvia bowleyana HOM05D005100 ORTHO05D005607 3.9e-61 238.0 127 91.3
SGA_v2.0_scaffold146G36159 Striga asiatica HOM05D005100 ORTHO05D005607 3.9e-61 238.0 127 89.8
arahy.Tifrunner.gnm1.ann1.CZL3S8 Arachis hypogaea HOM05D005100 ORTHO05D005607 5.1e-61 237.7 125 90.4
THA.LOC104806732 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 5.1e-61 237.7 127 88.2
Nitab4.5_0007493g0020 Nicotiana tabacum HOM05D005100 ORTHO05D005607 6.6e-61 237.3 127 90.6
CAN.G1218.6 Capsicum annuum HOM05D005100 ORTHO05D005607 8.6e-61 236.9 127 89.0
Prupe.3G111600 Prunus persica HOM05D005100 ORTHO05D005607 8.6e-61 236.9 127 89.8
Cfa012751 Carpinus fangiana HOM05D005100 ORTHO05D005607 1.5e-60 236.1 127 91.3
Cc08_g12730 Coffea canephora HOM05D005100 ORTHO05D005607 1.5e-60 236.1 127 89.0
Haze_07879 Corylus avellana HOM05D005100 ORTHO05D005607 1.5e-60 236.1 127 91.3
Gohir.D12G221900 Gossypium hirsutum HOM05D005100 ORTHO05D005607 1.5e-60 236.1 127 89.0
Duzib084G0333 Durio zibethinus HOM05D005100 ORTHO05D005607 1.9e-60 235.7 127 89.8
MD17G1263200 Malus domestica HOM05D005100 ORTHO05D005607 1.9e-60 235.7 127 89.0
CSS0026368 Camellia sinensis var. sinensis HOM05D005100 ORTHO05D005607 2.5e-60 235.3 127 90.6
Gohir.D08G190100 Gossypium hirsutum HOM05D005100 ORTHO05D005607 2.5e-60 235.3 127 89.0
Hund14589 Selenicereus undatus HOM05D005100 ORTHO05D005607 2.5e-60 235.3 126 88.9
Glyma.17G140500 Glycine max HOM05D005100 ORTHO05D005607 3.3e-60 235.0 127 89.0
Lsat_1_v5_gn_6_2981 Lactuca sativa HOM05D005100 ORTHO05D005607 3.3e-60 235.0 127 89.0
Nitab4.5_0000312g0250 Nicotiana tabacum HOM05D005100 ORTHO05D005607 4.3e-60 234.6 127 89.8
unitig_736.g22564 Utricularia gibba HOM05D005100 ORTHO05D005607 4.3e-60 234.6 127 89.0
RcHm_v2.0_Chr2g0131201 Rosa chinensis HOM05D005100 ORTHO05D005607 1.2e-59 233.0 127 89.0
Solyc08g078860.4 Solanum lycopersicum HOM05D005100 ORTHO05D005607 1.2e-59 233.0 127 88.2
Sopen08g027330 Solanum pennellii HOM05D005100 ORTHO05D005607 1.2e-59 233.0 127 88.2
ClCG10G002830 Citrullus lanatus HOM05D005100 ORTHO05D005607 1.6e-59 232.6 141 82.3
Gohir.A12G219800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 2.1e-59 232.3 125 88.8
Gorai.008G237800 Gossypium raimondii HOM05D005100 ORTHO05D005607 2.1e-59 232.3 127 87.4
Gohir.A08G171800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 2.8e-59 231.9 127 88.2
Aa31LG9G5470 Aethionema arabicum HOM05D005100 ORTHO05D005607 3.6e-59 231.5 127 87.4
FvH4_6g27850 Fragaria vesca HOM05D005100 ORTHO05D005607 3.6e-59 231.5 127 88.2
FAN02G0882 Fragaria x ananassa HOM05D005100 ORTHO05D005607 3.6e-59 231.5 127 88.2
Rhsim07G0106400 Rhododendron simsii HOM05D005100 ORTHO05D005607 4.7e-59 231.1 127 87.4
HanXRQChr13g0396371 Helianthus annuus HOM05D005100 ORTHO05D005607 8.1e-59 230.3 127 87.4
Rhsim07G0107000 Rhododendron simsii HOM05D005100 ORTHO05D005607 8.1e-59 230.3 126 86.5
Peaxi162Scf00002g01216 Petunia axillaris HOM05D005100 ORTHO05D005607 1.1e-58 229.9 127 87.4
FAN05G1737 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.4e-58 229.6 126 87.3
Gorai.004G200300 Gossypium raimondii HOM05D005100 ORTHO05D005607 1.4e-58 229.6 128 88.3
FAN14G3965 Fragaria x ananassa HOM05D005100 ORTHO05D005607 2.4e-58 228.8 126 87.3
Medtr4g101140 Medicago truncatula HOM05D005100 ORTHO05D005607 3.1e-58 228.4 127 85.8
Thhalv10001074m.g Eutrema salsugineum HOM05D005100 ORTHO05D005607 4.0e-58 228.0 127 87.4
Sp2g12300 Schrenkiella parvula HOM05D005100 ORTHO05D005607 5.2e-58 227.6 127 86.6
A06p44960 Brassica napus HOM05D005100 ORTHO05D005607 8.9e-58 226.9 127 87.4
BolC7t43663H Brassica oleracea HOM05D005100 ORTHO05D005607 8.9e-58 226.9 127 87.4
CARHR173780 Cardamine hirsuta HOM05D005100 ORTHO05D005607 8.9e-58 226.9 127 85.8
BcaC04g21614 Brassica carinata HOM05D005100 ORTHO05D005607 1.2e-57 226.5 127 87.4
BcaC06g34239 Brassica carinata HOM05D000285 ORTHO05D005607 1.2e-57 226.5 127 86.6
A09p23130 Brassica napus HOM05D000285 ORTHO05D005607 1.2e-57 226.5 127 87.4
BcaC06g31372 Brassica carinata HOM05D005100 ORTHO05D005607 1.5e-57 226.1 127 86.6
BraA06t27367Z Brassica rapa HOM05D005100 ORTHO05D005607 1.5e-57 226.1 127 86.6
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 1.5e-57 226.1 127 85.0
BcaB07g30770 Brassica carinata HOM05D005100 ORTHO05D005607 2.0e-57 225.7 127 86.6
Atru.chr9.1362 Acer truncatum HOM05D005100 ORTHO05D005607 2.6e-57 225.3 127 87.4
AL8G10400 Arabidopsis lyrata HOM05D005100 ORTHO05D005607 2.6e-57 225.3 127 86.6
C07p31220 Brassica napus HOM05D000285 ORTHO05D005607 3.4e-57 224.9 127 86.6
A02p31440 Brassica napus HOM05D000285 ORTHO05D005607 5.8e-57 224.2 127 85.0
BraA02t08146Z Brassica rapa HOM05D005100 ORTHO05D005607 5.8e-57 224.2 127 85.0
PSO017G3938 Papaver somniferum HOM05D005100 ORTHO05D005607 5.8e-57 224.2 127 87.4
Psat4g070000 Pisum sativum HOM05D005100 ORTHO05D005607 5.8e-57 224.2 127 84.3
AT5G47570 Arabidopsis thaliana HOM05D005100 ORTHO05D005607 7.6e-57 223.8 127 85.8
Carub.0008s0021 Capsella rubella HOM05D005100 ORTHO05D005607 7.6e-57 223.8 127 85.8
BcaC03g16973 Brassica carinata HOM05D005100 ORTHO05D005607 9.9e-57 223.4 127 85.0
C02p48770 Brassica napus HOM05D000285 ORTHO05D005607 9.9e-57 223.4 127 85.0
BolC2t10971H Brassica oleracea HOM05D005100 ORTHO05D005607 9.9e-57 223.4 127 85.0
PSO478G0216 Papaver somniferum HOM05D005100 ORTHO05D005607 9.9e-57 223.4 127 87.4
CANSAT21G2488 Cannabis sativa HOM05D005100 ORTHO05D005607 1.3e-56 223.0 127 85.0
Lj2C215G2 Lonicera japonica HOM05D005100 ORTHO05D005607 1.3e-56 223.0 127 87.4
Aqoxy7G00738 Aquilegia oxysepala HOM05D005100 ORTHO05D005607 3.8e-56 221.5 127 84.3
ECA233G3117 Erigeron canadensis HOM05D005100 ORTHO05D005607 3.8e-56 221.5 115 90.4
MD09G1234000 Malus domestica HOM05D005100 ORTHO05D005607 1.4e-55 219.5 127 83.5
ATR0105G007 Amborella trichopoda HOM05D005100 ORTHO05D005607 3.2e-55 218.4 127 82.7
BcaC06g31367 Brassica carinata HOM05D005100 ORTHO05D005607 4.1e-55 218.0 128 85.2
CDE11G0582 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 9.2e-55 216.9 127 81.9
Lj4g0006403 Lotus japonicus HOM05D005100 ORTHO05D005607 1.2e-54 216.5 127 82.7
CiPaw.12G108400 Carya illinoinensis HOM05D005100 ORTHO05D005607 2.7e-54 215.3 127 84.3
Actinidia02116 Actinidia chinensis HOM05D005100 ORTHO05D005607 3.9e-53 211.5 125 82.4
Dinv21616 Davidia involucrata HOM05D005100 ORTHO05D005607 7.3e-52 207.2 108 92.6
COL.COLO4_37195 Corchorus olitorius HOM05D005100 ORTHO05D005607 1.2e-51 206.5 108 92.6
HPP92_012813 Vanilla planifolia HOM05D005100 ORTHO05D005607 1.6e-51 206.1 127 78.7
Zm00001eb391700 Zea mays HOM05D005100 ORTHO05D005607 4.7e-51 204.5 127 78.0
THA.LOC104798464 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 6.2e-51 204.1 113 85.8
Sabra01G0094100 Salix brachista HOM05D005100 ORTHO05D005607 1.1e-50 203.4 108 91.7
Os10g0551600 Oryza sativa ssp. japonica HOM05D005100 ORTHO05D005607 1.4e-50 203.0 127 74.8
Haze_07877 Corylus avellana HOM05D005100 ORTHO05D005607 9.0e-50 200.3 108 91.7
Oeu011653.1 Olea europaea HOM05D005100 ORTHO05D005607 1.2e-49 199.9 108 89.8
Oeu006279.1 Olea europaea HOM05D005100 ORTHO05D005607 2.6e-49 198.7 108 88.9
MBI11_g37068_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 5.8e-49 197.6 108 86.1
Sed0017508 Sechium edule HOM05D005100 ORTHO05D005607 7.6e-49 197.2 108 87.0
Actinidia05198 Actinidia chinensis HOM05D005100 ORTHO05D005607 2.9e-48 195.3 94 94.7
MBI02_g00644_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 4.9e-48 194.5 108 84.3
vmacro14093 Vaccinium macrocarpon HOM05D005100 ORTHO05D005607 1.1e-47 193.4 108 87.0
Dinv39123 Davidia involucrata HOM05D005100 ORTHO05D005607 1.4e-47 193.0 95 93.7
Zm00001eb023020 Zea mays HOM05D005100 ORTHO05D005607 1.4e-47 193.0 127 72.4
PGSC0003DMG400004750 Solanum tuberosum HOM05D005100 ORTHO05D005607 1.9e-47 192.6 108 86.1
Ah.12g056670 Amaranthus hybridus HOM05D005100 ORTHO05D005607 2.4e-47 192.2 95 92.6
AUR62007498 Chenopodium quinoa HOM05D005100 ORTHO05D005607 9.3e-47 190.3 105 86.7
BolC9t55849H Brassica oleracea HOM05D000285 ORTHO05D005607 1.3e-45 186.4 113 82.3
BraA09t37916Z Brassica rapa HOM05D000285 ORTHO05D005607 6.6e-45 184.1 108 85.2
C09p29860 Brassica napus HOM05D000285 ORTHO05D005607 1.5e-44 183.0 113 80.5
DCAR_027789 Daucus carota HOM05D005100 ORTHO05D005607 2.8e-43 178.7 108 82.4
PGSC0003DMG400004799 Solanum tuberosum HOM05D005100 ORTHO05D005607 2.8e-43 178.7 140 67.1
COL.COLO4_37193 Corchorus olitorius HOM05D005100 ORTHO05D005607 1.3e-40 169.9 127 70.9
MBI02_g36452_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 4.9e-40 167.9 124 66.9
SEGI_05699 Sequoiadendron giganteum HOM05D005100 ORTHO05D005607 2.4e-39 165.6 122 65.6
CDE02G1099 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 2.5e-36 155.6 142 58.5
EL10Ac5g13047 Beta vulgaris HOM05D005100 ORTHO05D005607 9.6e-36 153.7 127 63.0
GSVIVG01001301001 Vitis vinifera HOM05D005100 ORTHO05D005607 1.6e-35 152.9 76 90.8
Pp3c20_8820 Physcomitrium patens HOM05D005100 ORTHO05D005607 8.1e-35 150.6 103 65.0
Mapoly0086s0019 Marchantia polymorpha HOM05D005100 ORTHO05D005607 8.4e-32 140.6 105 62.9
Sc22g0000770 Simmondsia chinensis HOM05D005100 ORTHO05D005607 7.1e-31 137.5 80 83.8
SalBow8G2639 Salvia bowleyana HOM05D005100 ORTHO05D005607 1.3e-29 133.3 76 88.2
Hund11615 Selenicereus undatus HOM05D005100 ORTHO05D005607 4.3e-28 128.3 127 56.7
RcHm_v2.0_Chr1g0345201 Rosa chinensis HOM05D005100 ORTHO05D005607 9.6e-28 127.1 80 75.0
FAN05G0157 Fragaria x ananassa HOM05D005100 ORTHO05D005607 2.4e-26 122.5 107 62.6
FAN09G2413 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.0e-24 117.1 87 67.8
TWI81G0033 Tripterygium wilfordii HOM05D000001 ORTHO05D011365 1.3e-24 116.7 64 87.5
RcHm_v2.0_Chr2g0109601 Rosa chinensis HOM05D005100 ORTHO05D005607 2.2e-24 115.9 68 80.9
RcHm_v2.0_Chr2g0112371 Rosa chinensis HOM05D005100 ORTHO05D005607 6.5e-24 114.4 67 80.6
FvH4_6g09560 Fragaria vesca HOM05D005100 ORTHO05D005607 8.4e-24 114.0 109 61.5
AagrBONN_evm.TU.Sc2ySwM_117.677 Anthoceros agrestis HOM05D005100 ORTHO05D005607 1.1e-23 113.6 109 52.3
RcHm_v2.0_Chr6g0244011 Rosa chinensis HOM05D005100 ORTHO05D005607 6.0e-22 107.8 76 68.4
RcHm_v2.0_Chr1g0326801 Rosa chinensis HOM05D005100 ORTHO05D005607 1.6e-19 99.8 98 57.1
MCO13G524 Micromonas commoda HOM05D005100 ORTHO05D005607 9.0e-18 94.0 103 46.6
RcHm_v2.0_Chr4g0420451 Rosa chinensis HOM05D005100 ORTHO05D005607 2.6e-17 92.4 69 68.1
RcHm_v2.0_Chr5g0051271 Rosa chinensis HOM05D005100 ORTHO05D005607 3.4e-17 92.0 69 68.1
CBR_g50946 Chara braunii HOM05D005100 ORTHO05D005607 1.9e-15 86.3 80 52.5
Nitab4.5_0003531g0010 Nicotiana tabacum HOM05D005100 ORTHO05D005607 1.2e-14 83.6 44 90.9
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 7.7e-09 64.3 45 71.1
QL12p012843 Quercus lobata HOM05D005100 ORTHO05D005607 1.3e-08 63.5 42 78.6


User provided reference genes

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