Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 7.0e-301 1036.6 545 100.0
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 2.4e-160 569.7 559 60.8
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 3.1e-160 569.3 552 60.0
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 6.1e-156 555.1 551 60.1
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 1.0e-155 554.3 552 60.1
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 3.0e-155 552.7 556 57.7
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 1.5e-154 550.4 552 57.8
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 1.7e-153 547.0 552 57.2
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.7e-153 547.0 572 55.6
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 6.4e-153 545.0 551 57.9
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 8.3e-153 544.7 551 57.7
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 1.1e-152 544.3 552 57.8
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 3.2e-152 542.7 558 56.1
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 7.8e-151 538.1 551 57.4
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 2.3e-150 536.6 558 57.5
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 1.1e-149 534.3 562 56.2
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 8.0e-148 528.1 552 58.5
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 1.1e-147 527.7 555 58.4
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 3.7e-145 519.2 551 56.4
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 1.9e-144 516.9 549 56.6
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 9.2e-144 514.6 553 56.8
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 1.2e-143 514.2 555 54.6
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 6.0e-143 511.9 546 54.4
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 7.8e-143 511.5 553 57.3
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 1.0e-142 511.1 550 56.2
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 3.0e-142 509.6 556 55.6
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 5.0e-142 508.8 554 56.1
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 9.5e-141 504.6 550 56.7
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 9.5e-141 504.6 563 52.4
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 1.6e-140 503.8 557 55.3
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 2.1e-140 503.4 554 55.1
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 2.1e-140 503.4 563 56.0
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 6.2e-140 501.9 549 56.6
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 8.1e-140 501.5 554 53.8
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 8.1e-140 501.5 564 54.6
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 3.1e-139 499.6 551 55.2
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 2.0e-138 496.9 553 55.5
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 1.3e-137 494.2 560 55.7
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 1.7e-137 493.8 561 55.4
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 2.9e-137 493.0 548 55.1
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 4.9e-137 492.3 567 54.9
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 1.1e-136 491.1 554 54.2
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 3.2e-136 489.6 556 57.2
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 1.6e-135 487.3 628 50.2
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 6.0e-135 485.3 600 51.5
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 3.3e-133 479.6 549 52.1
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 1.4e-131 474.2 561 53.7
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 5.2e-131 472.2 555 53.9
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 5.8e-130 468.8 554 53.2
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 5.8e-130 468.8 548 52.4
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 3.8e-129 466.1 511 54.6
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 8.4e-129 464.9 590 49.3
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 7.1e-128 461.8 562 51.4
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 1.2e-127 461.1 535 53.6
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 8.7e-126 454.9 547 53.6
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 1.9e-125 453.8 554 52.9
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 4.3e-125 452.6 566 52.1
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 1.2e-124 451.1 554 50.7
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 1.6e-124 450.7 559 53.0
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 4.7e-124 449.1 565 51.3
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 6.2e-124 448.7 565 52.6
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 4.0e-123 446.0 557 51.0
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 6.9e-123 445.3 556 50.4
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 9.0e-123 444.9 553 51.2
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 2.6e-122 443.4 554 50.7
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 1.4e-120 437.6 560 50.2
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 5.4e-120 435.6 548 48.7
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 2.7e-119 433.3 566 50.7
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 3.3e-117 426.4 567 51.5
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 8.1e-116 421.8 553 49.7
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 6.9e-115 418.7 551 50.3
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 9.0e-115 418.3 476 53.4
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 2.6e-114 416.8 566 50.0
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 4.5e-114 416.0 550 48.4
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 9.9e-114 414.8 550 49.1
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 2.2e-113 413.7 560 50.0
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 3.8e-113 412.9 550 49.1
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 1.2e-111 407.9 550 47.5
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 1.6e-111 407.5 551 48.1
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 2.7e-111 406.8 562 50.4
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 7.9e-111 405.2 549 48.5
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 1.0e-110 404.8 564 48.2
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 1.3e-110 404.4 548 49.3
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 1.3e-110 404.4 565 48.7
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 8.7e-110 401.7 544 49.6
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 8.7e-110 401.7 547 48.8
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 1.6e-108 397.5 561 48.7
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 1.6e-108 397.5 571 48.2
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 9.9e-106 388.3 548 47.8
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 1.3e-105 387.9 570 47.9
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 2.9e-105 386.7 562 47.9
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 3.8e-105 386.3 547 47.5
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 3.2e-104 383.3 556 45.5
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 1.2e-103 381.3 555 45.9
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 1.6e-103 380.9 572 43.2
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 1.8e-102 377.5 562 46.8
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 2.3e-102 377.1 555 47.0
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.3e-102 377.1 561 47.6
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 3.9e-102 376.3 560 46.2
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 5.6e-101 372.5 550 48.0
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.6e-100 370.9 567 45.7
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 3.7e-100 369.8 559 46.2
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.7e-100 369.8 562 46.1
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 6.2e-100 369.0 549 47.0
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 1.8e-99 367.5 551 47.2
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 1.2e-98 364.8 714 41.3
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 2.0e-98 364.0 611 43.7
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 7.6e-98 362.1 557 46.5
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 7.6e-98 362.1 557 46.5
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 3.9e-94 349.7 436 50.7
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 1.5e-82 311.2 366 51.4
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 3.9e-78 296.6 301 55.8
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 6.7e-78 295.8 304 56.6
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 1.3e-76 291.6 584 38.7
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 1.5e-74 284.6 544 41.5
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 7.7e-74 282.3 551 39.9
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 1.0e-73 282.0 313 53.0
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 1.0e-70 271.9 543 40.3
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 1.0e-70 271.9 543 40.3
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 2.6e-61 240.7 587 36.5
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 5.7e-61 239.6 414 43.2
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 5.0e-57 226.5 405 44.0
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 4.4e-53 213.4 250 55.6
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 3.7e-52 210.3 609 31.7
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 1.1e-48 198.7 535 33.5
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 1.1e-48 198.7 189 57.7
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 4.0e-46 190.3 177 58.8
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 6.8e-46 189.5 420 36.4
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 5.7e-45 186.4 304 41.8
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 1.5e-40 171.8 724 28.7
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.6e-39 168.3 302 40.1
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 9.8e-37 159.1 259 45.9
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.0e-33 147.5 216 48.1
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 1.4e-30 138.7 566 30.7
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 4.9e-28 130.2 103 68.9
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 1.9e-24 118.2 486 27.8
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 8.1e-23 112.8 143 51.0
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 2.2e-20 104.8 89 57.3
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 2.2e-20 104.8 241 36.5
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.6e-18 98.6 140 42.9
SMO367G1003 Selaginella moellendorffii HOM05D004539 ORTHO05D005482 3.0e-17 94.4 182 36.3
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 3.0e-17 94.4 99 49.5
Rhsim06G0017000 Rhododendron simsii HOM05D004539 ORTHO05D005482 2.9e-12 77.8 113 42.5
BcaB05g23177 Brassica carinata HOM05D004539 ORTHO05D005482 4.9e-12 77.0 116 44.0
Rhsim06G0016800 Rhododendron simsii HOM05D004539 ORTHO05D005482 4.9e-12 77.0 159 40.3
MELO3C034665.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.6e-10 72.0 191 33.0
PRCOL_00001157 Prasinoderma coloniale HOM05D004539 ORTHO05D005482 4.6e-10 70.5 372 27.7
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 7.8e-10 69.7 432 26.6
AagrBONN_evm.TU.Sc2ySwM_344.1880 Anthoceros agrestis HOM05D004539 ORTHO05D005482 1.0e-09 69.3 248 32.3


User provided reference genes

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